Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.1e-103 379.0 186 100.0
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 1.5e-40 170.2 104 79.8
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 5.5e-40 168.3 104 77.9
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 7.2e-40 167.9 105 78.1
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 7.2e-40 167.9 104 78.8
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 9.4e-40 167.5 104 78.8
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 9.4e-40 167.5 104 78.8
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 9.4e-40 167.5 104 78.8
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 9.4e-40 167.5 104 78.8
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 9.4e-40 167.5 104 78.8
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 9.4e-40 167.5 104 78.8
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 9.4e-40 167.5 104 78.8
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 9.4e-40 167.5 104 78.8
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 9.4e-40 167.5 104 78.8
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 9.4e-40 167.5 104 78.8
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 2.1e-39 166.4 104 77.9
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 2.7e-39 166.0 104 78.8
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 2.7e-39 166.0 104 77.9
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.6e-39 165.6 104 77.9
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 3.6e-39 165.6 104 77.9
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 4.7e-39 165.2 104 77.9
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 4.7e-39 165.2 104 77.9
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 4.7e-39 165.2 104 77.9
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 4.7e-39 165.2 104 77.9
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 4.7e-39 165.2 104 77.9
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 4.7e-39 165.2 104 77.9
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 4.7e-39 165.2 104 77.9
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.7e-39 165.2 104 77.9
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 6.1e-39 164.9 193 51.3
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 1.4e-38 163.7 102 78.4
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 1.4e-38 163.7 102 78.4
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 1.4e-38 163.7 102 78.4
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 1.4e-38 163.7 102 78.4
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 1.4e-38 163.7 102 78.4
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 1.4e-38 163.7 102 78.4
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 1.4e-38 163.7 102 78.4
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 1.4e-38 163.7 102 78.4
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 1.4e-38 163.7 102 78.4
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 1.8e-38 163.3 104 77.9
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 6.7e-38 161.4 102 77.5
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.5e-37 160.2 113 69.0
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.5e-37 160.2 113 69.0
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 1.7e-33 146.7 92 80.4
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.8e-33 145.6 98 72.4
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 5.0e-33 145.2 100 76.0
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 7.2e-32 141.4 100 68.0
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 5.7e-29 131.7 80 80.0
Nitab4.5_0009672g0060 Nicotiana tabacum HOM05D012916 ORTHO05D014365 1.6e-26 123.6 106 62.3
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 1.0e-25 120.9 76 78.9
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 1.0e-25 120.9 76 78.9
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.0e-25 118.6 76 77.6
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.0e-25 118.6 76 77.6
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.0e-25 118.6 76 77.6
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 1.1e-24 117.5 76 76.3
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 2.5e-24 116.3 76 76.3
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 5.5e-24 115.2 76 76.3
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 1.3e-20 104.0 97 54.6
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 3.7e-20 102.4 66 77.3
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 3.7e-20 102.4 66 77.3
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 8.3e-20 101.3 55 83.6
COL.COLO4_04172 Corchorus olitorius HOM05D012916 ORTHO05D014365 3.5e-18 95.9 127 45.7
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 3.9e-17 92.4 100 50.0
C04p32420 Brassica napus HOM05D004537 ORTHO05D005492 3.3e-16 89.4 67 68.7
EL10Ac5g12760 Beta vulgaris HOM05D004537 ORTHO05D005492 9.8e-13 77.8 44 77.3
TPR.G39033 Trifolium pratense HOM05D004537 ORTHO05D005492 2.9e-12 76.3 49 73.5
Dinv03288 Davidia involucrata HOM05D038564 ORTHO05D014365 4.9e-12 75.5 49 75.5
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 1.1e-11 74.3 41 85.4
Eucgr.H02721 Eucalyptus grandis HOM05D012916 ORTHO05D014365 3.2e-11 72.8 38 84.2
Gorai.001G162600 Gossypium raimondii HOM05D012916 ORTHO05D014365 5.4e-11 72.0 82 53.7
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 7.0e-11 71.6 69 58.0
Nitab4.5_0001127g0350 Nicotiana tabacum HOM05D004537 ORTHO05D005492 9.2e-11 71.2 74 52.7
unitig_87.g28002 Utricularia gibba HOM05D012916 ORTHO05D014365 1.6e-10 70.5 45 71.1
Nitab4.5_0005212g0020 Nicotiana tabacum HOM05D000080 ORTHO05D001194 1.0e-09 67.8 42 81.0
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 1.3e-09 67.4 87 36.8
GSVIVG01013359001 Vitis vinifera HOM05D000638 ORTHO05D000801 1.3e-09 67.4 38 78.9
Solyc08g029300.3 Solanum lycopersicum HOM05D012916 ORTHO05D014365 1.7e-09 67.0 68 54.4
Nitab4.5_0000592g0200 Nicotiana tabacum HOM05D012916 ORTHO05D014365 3.0e-09 66.2 44 70.5
arahy.Tifrunner.gnm1.ann1.PTL79Z Arachis hypogaea HOM05D012916 ORTHO05D014365 1.1e-08 64.3 39 76.9
Nitab4.5_0000172g1360 Nicotiana tabacum HOM05D008163 ORTHO05D010305 1.5e-08 63.9 44 68.2
BolC4t24790H Brassica oleracea HOM05D004537 ORTHO05D005492 1.9e-08 63.5 33 81.8
arahy.Tifrunner.gnm1.ann1.PK4DTL Arachis hypogaea HOM05D012916 ORTHO05D014365 2.5e-08 63.2 39 76.9
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 7.3e-08 61.6 34 82.4
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.8e-06 57.0 30 86.7
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 2.3e-06 56.6 37 73.0
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 3.1e-06 56.2 37 73.0
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 3.1e-06 56.2 37 73.0
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 4.0e-06 55.8 34 76.5
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 4.0e-06 55.8 34 76.5
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 5.2e-06 55.5 34 73.5
Nitab4.5_0001127g0310 Nicotiana tabacum HOM05D008163 ORTHO05D010305 6.8e-06 55.1 38 65.8
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 8.9e-06 54.7 30 83.3
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 8.9e-06 54.7 30 83.3
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 8.9e-06 54.7 30 83.3


User provided reference genes

Program Settings