Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000073g0450 Nicotiana tabacum HOM05D004588 ORTHO05D005365 3.5e-61 238.0 116 100.0
Nitab4.5_0004827g0050 Nicotiana tabacum HOM05D004588 ORTHO05D005365 1.2e-37 159.8 115 73.9
PGSC0003DMG400002922 Solanum tuberosum HOM05D004588 ORTHO05D005365 1.7e-31 139.4 116 67.2
Solyc12g009380.2 Solanum lycopersicum HOM05D004588 ORTHO05D005365 4.7e-29 131.3 111 65.8
Dinv31498 Davidia involucrata HOM05D004588 ORTHO05D005365 6.1e-29 131.0 115 60.9
Nitab4.5_0000170g0150 Nicotiana tabacum HOM05D004588 ORTHO05D005365 6.1e-29 131.0 116 62.9
TAR626G1307 Trochodendron aralioides HOM05D004588 ORTHO05D005365 8.0e-29 130.6 115 60.0
Peaxi162Scf00474g00216 Petunia axillaris HOM05D004588 ORTHO05D005365 1.4e-28 129.8 115 63.5
Sopen12g004370 Solanum pennellii HOM05D004588 ORTHO05D005365 2.3e-28 129.0 111 64.9
Manes.01G180900 Manihot esculenta HOM05D004588 ORTHO05D005365 6.7e-28 127.5 115 60.9
COL.COLO4_31171 Corchorus olitorius HOM05D004588 ORTHO05D005365 8.8e-28 127.1 116 60.3
Nn5g26959 Nelumbo nucifera HOM05D004588 ORTHO05D005365 3.3e-27 125.2 106 63.2
Gohir.A05G279932 Gossypium hirsutum HOM05D004588 ORTHO05D005365 4.4e-27 124.8 109 61.5
Cpa.g.sc91.70 Carica papaya HOM05D004588 ORTHO05D005365 5.7e-27 124.4 115 60.0
HanXRQChr06g0184041 Helianthus annuus HOM05D004588 ORTHO05D005365 7.4e-27 124.0 115 60.9
Rhsim01G0103600 Rhododendron simsii HOM05D004588 ORTHO05D005365 7.4e-27 124.0 115 56.5
RhsimUnG0238800 Rhododendron simsii HOM05D004588 ORTHO05D005365 7.4e-27 124.0 115 56.5
MSTRG.19411 Avicennia marina HOM05D004588 ORTHO05D005365 9.7e-27 123.6 108 61.1
Hma1.2p1_0391F.1_g142890 Hydrangea macrophylla HOM05D004588 ORTHO05D005365 9.7e-27 123.6 118 59.3
Thecc.02G231300 Theobroma cacao HOM05D004588 ORTHO05D005365 9.7e-27 123.6 115 57.4
Atru.chr8.89 Acer truncatum HOM05D004588 ORTHO05D005365 1.3e-26 123.2 109 61.5
Duzib248G0295 Durio zibethinus HOM05D004588 ORTHO05D005365 2.2e-26 122.5 109 60.6
Gorai.009G295100 Gossypium raimondii HOM05D004588 ORTHO05D005365 2.8e-26 122.1 109 60.6
SalBow6G0192 Salvia bowleyana HOM05D004588 ORTHO05D005365 3.7e-26 121.7 106 61.3
Actinidia38537 Actinidia chinensis HOM05D004588 ORTHO05D005365 4.8e-26 121.3 115 56.5
arahy.Tifrunner.gnm1.ann1.7DYL36 Arachis hypogaea HOM05D004588 ORTHO05D005365 6.3e-26 120.9 113 55.8
CDE04G0148 Ceratophyllum demersum HOM05D004588 ORTHO05D005365 6.3e-26 120.9 111 58.6
Dinv12627 Davidia involucrata HOM05D004588 ORTHO05D005365 6.3e-26 120.9 115 57.4
PGR044G1699 Punica granatum HOM05D004588 ORTHO05D005365 6.3e-26 120.9 97 67.0
TAR383G0700 Trochodendron aralioides HOM05D004588 ORTHO05D005365 6.3e-26 120.9 116 56.0
vmacro20736 Vaccinium macrocarpon HOM05D004588 ORTHO05D005365 6.3e-26 120.9 116 56.0
arahy.Tifrunner.gnm1.ann1.7K7KM4 Arachis hypogaea HOM05D004588 ORTHO05D005365 8.2e-26 120.6 112 56.2
Potri.006G080200 Populus trichocarpa HOM05D004588 ORTHO05D005365 8.2e-26 120.6 115 58.3
MELO3C026421.2 Cucumis melo HOM05D004588 ORTHO05D005365 1.1e-25 120.2 116 56.9
TWI53G1560 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 1.1e-25 120.2 110 56.4
MBI13_g33575_MAGBIO Magnolia biondii HOM05D004588 ORTHO05D005365 1.4e-25 119.8 116 56.0
TWI74G0566 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 1.4e-25 119.8 108 57.4
Potri.018G150100 Populus trichocarpa HOM05D004588 ORTHO05D005365 1.8e-25 119.4 115 59.1
Ciclev10009986m.g Citrus clementina HOM05D004588 ORTHO05D005365 2.4e-25 119.0 98 64.3
Gohir.D05G281600 Gossypium hirsutum HOM05D004588 ORTHO05D005365 2.4e-25 119.0 109 59.6
Aqoxy7G03968 Aquilegia oxysepala HOM05D004588 ORTHO05D005365 3.1e-25 118.6 109 61.5
Ca_10717_v3 Cicer arietinum L. HOM05D004588 ORTHO05D005365 3.1e-25 118.6 115 58.3
Atru.chr8.1086 Acer truncatum HOM05D004588 ORTHO05D005365 4.1e-25 118.2 109 57.8
Sabra06G0060700 Salix brachista HOM05D004588 ORTHO05D005365 4.1e-25 118.2 114 59.6
ClCG07G006010 Citrullus lanatus HOM05D004588 ORTHO05D005365 5.3e-25 117.9 116 56.0
Migut.J00858 Erythranthe guttata HOM05D004588 ORTHO05D005365 5.3e-25 117.9 104 60.6
TPR.G5271 Trifolium pratense HOM05D004588 ORTHO05D005365 5.3e-25 117.9 98 64.3
Ah.07g207540 Amaranthus hybridus HOM05D004588 ORTHO05D005365 7.0e-25 117.5 100 63.0
Ciclev10006280m.g Citrus clementina HOM05D004588 ORTHO05D005365 7.0e-25 117.5 98 63.3
Medtr6g005030 Medicago truncatula HOM05D004588 ORTHO05D005365 7.0e-25 117.5 115 57.4
ECA238G1741 Erigeron canadensis HOM05D004588 ORTHO05D005365 9.1e-25 117.1 107 57.9
Lsat_1_v5_gn_4_185681 Lactuca sativa HOM05D004588 ORTHO05D005365 9.1e-25 117.1 97 63.9
Hund04573 Selenicereus undatus HOM05D004588 ORTHO05D005365 9.1e-25 117.1 114 57.0
ATR0626G376 Amborella trichopoda HOM05D004588 ORTHO05D005365 1.2e-24 116.7 115 57.4
Sed0013564 Sechium edule HOM05D004588 ORTHO05D005365 1.2e-24 116.7 117 57.3
Ca_20351_v3 Cicer arietinum L. HOM05D004588 ORTHO05D005365 1.6e-24 116.3 98 63.3
Cc06_g23660 Coffea canephora HOM05D004588 ORTHO05D005365 1.6e-24 116.3 115 58.3
CsaV3_4G009740 Cucumis sativus L. HOM05D004588 ORTHO05D005365 1.6e-24 116.3 116 55.2
SGA_v2.0_scaffold21G09593 Striga asiatica HOM05D004588 ORTHO05D005365 1.6e-24 116.3 97 62.9
SGA_v2.0_scaffold272G46369 Striga asiatica HOM05D004588 ORTHO05D005365 1.6e-24 116.3 97 62.9
arahy.Tifrunner.gnm1.ann1.HQTU6U Arachis hypogaea HOM05D004588 ORTHO05D005365 2.0e-24 115.9 109 56.0
Glyma.01G125100 Glycine max HOM05D004588 ORTHO05D005365 2.0e-24 115.9 111 56.8
Medtr4g014360 Medicago truncatula HOM05D004588 ORTHO05D005365 2.0e-24 115.9 98 62.2
HPP92_001963 Vanilla planifolia HOM05D004588 ORTHO05D005365 2.0e-24 115.9 105 58.1
GSVIVG01034226001 Vitis vinifera HOM05D004588 ORTHO05D005365 2.6e-24 115.5 102 61.8
GSVIVG01034243001 Vitis vinifera HOM05D004588 ORTHO05D005365 2.6e-24 115.5 102 61.8
BcaB04g17345 Brassica carinata HOM05D004588 ORTHO05D005365 3.5e-24 115.2 98 63.3
C08p04210 Brassica napus HOM05D004588 ORTHO05D005365 3.5e-24 115.2 98 63.3
Thhalv10011874m.g Eutrema salsugineum HOM05D004588 ORTHO05D005365 3.5e-24 115.2 98 63.3
AUR62015449 Chenopodium quinoa HOM05D004588 ORTHO05D005365 4.5e-24 114.8 116 56.9
FAN13G2885 Fragaria x ananassa HOM05D004588 ORTHO05D005365 4.5e-24 114.8 104 58.7
Lalb_Chr02g0150391 Lupinus albus HOM05D004588 ORTHO05D005365 4.5e-24 114.8 97 63.9
QL11p006982 Quercus lobata HOM05D004588 ORTHO05D005365 4.5e-24 114.8 104 60.6
Sp1g36240 Schrenkiella parvula HOM05D004588 ORTHO05D005365 4.5e-24 114.8 98 62.2
Zm00001eb176930 Zea mays HOM05D004588 ORTHO05D005365 4.5e-24 114.8 115 52.2
Aa31LG10G4590 Aethionema arabicum HOM05D004588 ORTHO05D005365 7.7e-24 114.0 98 63.3
Lalb_Chr06g0169291 Lupinus albus HOM05D004588 ORTHO05D005365 7.7e-24 114.0 97 63.9
MD11G1162200 Malus domestica HOM05D004588 ORTHO05D005365 7.7e-24 114.0 96 63.5
AL1G56520 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 1.0e-23 113.6 98 62.2
AL1G56550 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 1.0e-23 113.6 98 62.2
AL3G32270 Arabidopsis lyrata HOM05D004588 ORTHO05D005365 1.0e-23 113.6 116 55.2
Carub.0001s3858 Capsella rubella HOM05D004588 ORTHO05D005365 1.0e-23 113.6 98 62.2
AUR62002237 Chenopodium quinoa HOM05D004588 ORTHO05D005365 1.3e-23 113.2 96 62.5
Thhalv10021804m.g Eutrema salsugineum HOM05D004588 ORTHO05D005365 1.3e-23 113.2 98 61.2
MD03G1139600 Malus domestica HOM05D004588 ORTHO05D005365 1.3e-23 113.2 96 63.5
Psat2g183160 Pisum sativum HOM05D004588 ORTHO05D005365 1.3e-23 113.2 98 62.2
Sp3g16980 Schrenkiella parvula HOM05D004588 ORTHO05D005365 1.3e-23 113.2 115 53.9
Psat0s11495g0040 Pisum sativum HOM05D004588 ORTHO05D005365 1.7e-23 112.8 98 62.2
Prupe.6G124600 Prunus persica HOM05D004588 ORTHO05D005365 1.7e-23 112.8 109 58.7
Aa31LG8G5720 Aethionema arabicum HOM05D004588 ORTHO05D005365 2.2e-23 112.5 115 54.8
AT1G49400 Arabidopsis thaliana HOM05D004588 ORTHO05D005365 2.2e-23 112.5 98 60.2
CARHR039400 Cardamine hirsuta HOM05D004588 ORTHO05D005365 2.9e-23 112.1 98 60.2
Os08g0359600 Oryza sativa ssp. japonica HOM05D004588 ORTHO05D005365 3.8e-23 111.7 98 60.2
BcaNung06952 Brassica carinata HOM05D004588 ORTHO05D005365 5.0e-23 111.3 98 61.2
A05p30670 Brassica napus HOM05D004588 ORTHO05D005365 5.0e-23 111.3 98 61.2
C05p46550 Brassica napus HOM05D004588 ORTHO05D005365 5.0e-23 111.3 98 61.2
BolC5t33384H Brassica oleracea HOM05D004588 ORTHO05D005365 5.0e-23 111.3 98 61.2
BraA05t21909Z Brassica rapa HOM05D004588 ORTHO05D005365 5.0e-23 111.3 98 61.2
Phvul.008G093100 Phaseolus vulgaris HOM05D004588 ORTHO05D005365 5.0e-23 111.3 97 61.9
Zm00001eb041040 Zea mays HOM05D004588 ORTHO05D005365 5.0e-23 111.3 114 52.6
Psat0s5319g0080 Pisum sativum HOM05D004588 ORTHO05D005365 6.5e-23 110.9 98 61.2
RcHm_v2.0_Chr7g0235191 Rosa chinensis HOM05D004588 ORTHO05D005365 6.5e-23 110.9 97 60.8
BcaB06g25942 Brassica carinata HOM05D004588 ORTHO05D005365 8.5e-23 110.5 98 60.2
FvH4_5g34540 Fragaria vesca HOM05D004588 ORTHO05D005365 8.5e-23 110.5 110 55.5
FAN08G2577 Fragaria x ananassa HOM05D004588 ORTHO05D005365 8.5e-23 110.5 110 55.5
FAN18G1354 Fragaria x ananassa HOM05D004588 ORTHO05D005365 8.5e-23 110.5 110 55.5
Glyma.07G155900 Glycine max HOM05D004588 ORTHO05D005365 8.5e-23 110.5 113 55.8
CiPaw.01G111800 Carya illinoinensis HOM05D004588 ORTHO05D005365 1.1e-22 110.2 100 59.0
AT3G18880 Arabidopsis thaliana HOM05D004588 ORTHO05D005365 1.9e-22 109.4 115 51.3
VMungo1383G1103 Vigna mungo HOM05D004588 ORTHO05D005365 1.9e-22 109.4 97 60.8
THA.LOC104798808 Tarenaya hassleriana HOM05D004588 ORTHO05D005365 2.5e-22 109.0 100 59.0
Lj4g0014219 Lotus japonicus HOM05D004588 ORTHO05D005365 3.2e-22 108.6 98 60.2
PSO170G5232 Papaver somniferum HOM05D004588 ORTHO05D005365 3.2e-22 108.6 96 60.4
PSO407G0251 Papaver somniferum HOM05D004588 ORTHO05D005365 3.2e-22 108.6 96 60.4
FAN14G2878 Fragaria x ananassa HOM05D004588 ORTHO05D005365 4.2e-22 108.2 110 54.5
Glyma.18G206300 Glycine max HOM05D004588 ORTHO05D005365 4.2e-22 108.2 112 55.4
THA.LOC104800355 Tarenaya hassleriana HOM05D004588 ORTHO05D005365 4.2e-22 108.2 122 51.6
FAN04G2743 Fragaria x ananassa HOM05D004588 ORTHO05D005365 5.5e-22 107.8 110 54.5
FAN05G0480 Fragaria x ananassa HOM05D004588 ORTHO05D005365 5.5e-22 107.8 110 54.5
FAN09G1784 Fragaria x ananassa HOM05D004588 ORTHO05D005365 5.5e-22 107.8 110 54.5
Prupe.1G001800 Prunus persica HOM05D004588 ORTHO05D005365 1.2e-21 106.7 106 57.5
SEGI_39311 Sequoiadendron giganteum HOM05D004588 ORTHO05D005365 1.6e-21 106.3 100 58.0
Oeu008630.1 Olea europaea HOM05D004588 ORTHO05D005365 2.7e-21 105.5 109 52.3
SEGI_30295 Sequoiadendron giganteum HOM05D004588 ORTHO05D005365 4.7e-21 104.8 100 57.0
FAN04G2398 Fragaria x ananassa HOM05D004588 ORTHO05D005365 4.0e-20 101.7 111 54.1
Oeu036964.1 Olea europaea HOM05D004588 ORTHO05D005365 1.5e-19 99.8 98 55.1
BcaC07g37057 Brassica carinata HOM05D004588 ORTHO05D005365 2.4e-17 92.4 108 50.9
BolC8t47225H Brassica oleracea HOM05D004588 ORTHO05D005365 2.4e-17 92.4 108 50.9
AagrBONN_evm.TU.Sc2ySwM_362.494 Anthoceros agrestis HOM05D004588 ORTHO05D005365 3.1e-17 92.0 114 46.5
Peaxi162Scf00047g02426 Petunia axillaris HOM05D000445 ORTHO05D005365 2.0e-16 89.4 109 49.5
Mapoly0128s0026 Marchantia polymorpha HOM05D004588 ORTHO05D005365 2.2e-15 85.9 102 47.1
CBR_g18728 Chara braunii HOM05D004588 ORTHO05D005365 1.1e-14 83.6 112 42.0
SMO230G0073 Selaginella moellendorffii HOM05D004588 ORTHO05D005365 2.5e-14 82.4 93 49.5
Pp3c1_39230 Physcomitrium patens HOM05D004588 ORTHO05D005365 4.2e-14 81.6 102 45.1
DCAR_013469 Daucus carota HOM05D004588 ORTHO05D005365 9.4e-14 80.5 39 94.9
Sc15g0007280 Simmondsia chinensis HOM05D004588 ORTHO05D005365 1.6e-13 79.7 46 80.4
CDE02G2168 Ceratophyllum demersum HOM05D002987 ORTHO05D003359 4.7e-13 78.2 39 92.3
AUR62001361 Chenopodium quinoa HOM05D004588 ORTHO05D005365 6.1e-13 77.8 117 44.4
unitig_26.g9124 Utricularia gibba HOM05D000513 ORTHO05D003825 8.0e-13 77.4 39 89.7
CSS0028506 Camellia sinensis var. sinensis HOM05D004588 ORTHO05D005365 1.4e-12 76.6 70 62.9
Actinidia29985 Actinidia chinensis HOM05D004588 ORTHO05D005365 8.8e-12 73.9 39 89.7
Manes.03G098816 Manihot esculenta HOM05D004588 ORTHO05D005365 8.8e-12 73.9 53 69.8
arahy.Tifrunner.gnm1.ann1.2BL1F5 Arachis hypogaea HOM05D004588 ORTHO05D005365 3.4e-11 72.0 44 75.0
Psat7g249240 Pisum sativum HOM05D004588 ORTHO05D005365 5.7e-11 71.2 39 84.6
Psat0s5319g0120 Pisum sativum HOM05D004588 ORTHO05D005365 2.2e-10 69.3 43 79.1
Psat2g183080 Pisum sativum HOM05D004588 ORTHO05D005365 2.2e-10 69.3 43 79.1
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 3.7e-10 68.6 50 70.0
Hund11851 Selenicereus undatus HOM05D004588 ORTHO05D005365 8.3e-10 67.4 87 43.7
arahy.Tifrunner.gnm1.ann1.8LR1I7 Arachis hypogaea HOM05D004588 ORTHO05D005365 2.4e-09 65.9 80 46.2
MCO14G513 Micromonas commoda HOM05D004588 ORTHO05D005365 1.2e-08 63.5 93 37.6
CSS0016928 Camellia sinensis var. sinensis HOM05D004588 ORTHO05D005365 7.7e-08 60.8 54 57.4
BraA08t32393Z Brassica rapa HOM05D004588 ORTHO05D005365 2.3e-07 59.3 67 49.3
A08p03610 Brassica napus HOM05D004588 ORTHO05D005365 2.5e-06 55.8 33 78.8


User provided reference genes

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