Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000073g0410 Nicotiana tabacum HOM05D001618 ORTHO05D001486 2.6e-36 154.8 77 100.0
Nitab4.5_0002443g0010 Nicotiana tabacum HOM05D001618 ORTHO05D001486 4.5e-28 127.5 74 86.5
Peaxi162Scf00928g00224 Petunia axillaris HOM05D001618 ORTHO05D001486 1.7e-19 99.0 70 74.3
Peaxi162Scf00191g00051 Petunia axillaris HOM05D001618 ORTHO05D001486 4.8e-14 80.9 71 64.8
Solyc12g009290.1 Solanum lycopersicum HOM05D001618 ORTHO05D001486 6.3e-14 80.5 69 59.4
Sopen12g004270 Solanum pennellii HOM05D001618 ORTHO05D001486 1.1e-13 79.7 69 60.9
PGSC0003DMG400002896 Solanum tuberosum HOM05D001618 ORTHO05D001486 1.5e-12 75.9 69 58.0
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 2.0e-12 75.5 70 58.6
Peaxi162Scf00533g00022 Petunia axillaris HOM05D001618 ORTHO05D001486 2.9e-11 71.6 72 54.2
Oeu000295.1 Olea europaea HOM05D001618 ORTHO05D001486 5.0e-11 70.9 70 57.1
MSTRG.10488 Avicennia marina HOM05D001618 ORTHO05D001486 1.1e-10 69.7 69 55.1
Cc06_g12650 Coffea canephora HOM05D001618 ORTHO05D001486 1.1e-10 69.7 70 52.9
Oeu015768.1 Olea europaea HOM05D001618 ORTHO05D001486 1.1e-10 69.7 68 55.9
CiPaw.03G201600 Carya illinoinensis HOM05D001618 ORTHO05D001486 2.5e-10 68.6 59 62.7
Nitab4.5_0001407g0020 Nicotiana tabacum HOM05D001618 ORTHO05D001486 2.5e-10 68.6 76 56.6
CANSAT56G3735 Cannabis sativa HOM05D001618 ORTHO05D001486 3.2e-10 68.2 65 53.8
Sopen07g022120 Solanum pennellii HOM05D001618 ORTHO05D001486 3.2e-10 68.2 72 54.2
Nitab4.5_0001407g0050 Nicotiana tabacum HOM05D001618 ORTHO05D001486 4.2e-10 67.8 76 55.3
SalBow5G0564 Salvia bowleyana HOM05D001618 ORTHO05D001486 4.2e-10 67.8 71 53.5
Solyc07g042490.1 Solanum lycopersicum HOM05D001618 ORTHO05D001486 5.5e-10 67.4 72 52.8
SalBow5G1988 Salvia bowleyana HOM05D001618 ORTHO05D001486 7.2e-10 67.0 71 53.5
PGSC0003DMG400013549 Solanum tuberosum HOM05D001618 ORTHO05D001486 7.2e-10 67.0 71 52.1
Actinidia30253 Actinidia chinensis HOM05D001618 ORTHO05D001486 9.4e-10 66.6 72 50.0
Haze_26064 Corylus avellana HOM05D001618 ORTHO05D001486 9.4e-10 66.6 34 85.3
Migut.L01594 Erythranthe guttata HOM05D001618 ORTHO05D001486 9.4e-10 66.6 76 47.4
Lalb_Chr12g0200331 Lupinus albus HOM05D001618 ORTHO05D001486 9.4e-10 66.6 72 50.0
GSVIVG01015021001 Vitis vinifera HOM05D001618 ORTHO05D001486 9.4e-10 66.6 66 56.1
Oeu010849.1 Olea europaea HOM05D001618 ORTHO05D001486 1.2e-09 66.2 70 52.9
Potri.006G137000 Populus trichocarpa HOM05D001618 ORTHO05D001486 1.6e-09 65.9 67 49.3
Sopen05g022270 Solanum pennellii HOM05D001618 ORTHO05D001486 1.6e-09 65.9 72 54.2
Ah.14g084670 Amaranthus hybridus HOM05D001618 ORTHO05D001486 2.1e-09 65.5 46 65.2
Cfa002941 Carpinus fangiana HOM05D001618 ORTHO05D001486 2.1e-09 65.5 42 73.8
Solyc05g025985.1 Solanum lycopersicum HOM05D001618 ORTHO05D001486 2.1e-09 65.5 72 52.8
CiPaw.04G140000 Carya illinoinensis HOM05D001618 ORTHO05D001486 2.7e-09 65.1 48 62.5
Peaxi162Scf00533g00021 Petunia axillaris HOM05D001618 ORTHO05D001486 2.7e-09 65.1 70 57.1
Gohir.A13G189300 Gossypium hirsutum HOM05D001618 ORTHO05D001486 4.6e-09 64.3 66 50.0
Gohir.D13G196300 Gossypium hirsutum HOM05D001618 ORTHO05D001486 4.6e-09 64.3 66 50.0
Gorai.013G222500 Gossypium raimondii HOM05D001618 ORTHO05D001486 4.6e-09 64.3 66 50.0
Hma1.2p1_0090F.1_g046000 Hydrangea macrophylla HOM05D001618 ORTHO05D001486 7.9e-09 63.5 51 62.7
Lalb_Chr13g0299221 Lupinus albus HOM05D001618 ORTHO05D001486 7.9e-09 63.5 46 65.2
RcHm_v2.0_Chr2g0095881 Rosa chinensis HOM05D001618 ORTHO05D001486 7.9e-09 63.5 71 49.3
QL11p002832 Quercus lobata HOM05D001618 ORTHO05D001486 1.0e-08 63.2 70 48.6
CAN.G2615.1 Capsicum annuum HOM05D001618 ORTHO05D001486 1.8e-08 62.4 76 48.7
Cpa.g.c37833 Carica papaya HOM05D001618 ORTHO05D001486 1.8e-08 62.4 66 48.5
Ciclev10009909m.g Citrus clementina HOM05D001618 ORTHO05D001486 1.8e-08 62.4 44 63.6
Rhsim05G0002600 Rhododendron simsii HOM05D001618 ORTHO05D001486 2.3e-08 62.0 46 60.9
Glyma.17G046000 Glycine max HOM05D001618 ORTHO05D001486 3.0e-08 61.6 51 58.8
Peaxi162Scf00533g00001 Petunia axillaris HOM05D001618 ORTHO05D001486 3.0e-08 61.6 70 50.0
Sc18g0002820 Simmondsia chinensis HOM05D001618 ORTHO05D001486 3.0e-08 61.6 35 77.1
Phvul.009G223900 Phaseolus vulgaris HOM05D001618 ORTHO05D001486 3.9e-08 61.2 70 47.1
SalBow6G1257 Salvia bowleyana HOM05D001618 ORTHO05D001486 3.9e-08 61.2 69 49.3
Eucgr.C00771 Eucalyptus grandis HOM05D001618 ORTHO05D001486 5.1e-08 60.8 35 74.3
MD02G1100200 Malus domestica HOM05D001618 ORTHO05D001486 5.1e-08 60.8 66 50.0
Sabra06G0107100 Salix brachista HOM05D001618 ORTHO05D001486 5.1e-08 60.8 66 43.9
TWI34G0338 Tripterygium wilfordii HOM05D001618 ORTHO05D001486 5.1e-08 60.8 63 49.2
Gohir.A07G017000 Gossypium hirsutum HOM05D001618 ORTHO05D001486 6.7e-08 60.5 67 46.3
Gohir.D07G016800 Gossypium hirsutum HOM05D001618 ORTHO05D001486 6.7e-08 60.5 67 46.3
Gorai.001G017600 Gossypium raimondii HOM05D001618 ORTHO05D001486 6.7e-08 60.5 67 46.3
Medtr8g022440 Medicago truncatula HOM05D001618 ORTHO05D001486 6.7e-08 60.5 65 46.2
Phvul.010G125400 Phaseolus vulgaris HOM05D001618 ORTHO05D001486 6.7e-08 60.5 68 48.5
AUR62025305 Chenopodium quinoa HOM05D001618 ORTHO05D001486 8.8e-08 60.1 66 51.5
Ca_23415_v3 Cicer arietinum L. HOM05D001618 ORTHO05D001486 8.8e-08 60.1 49 53.1
DCAR_011920 Daucus carota HOM05D001618 ORTHO05D001486 8.8e-08 60.1 69 44.9
Oeu055328.1 Olea europaea HOM05D001618 ORTHO05D001486 8.8e-08 60.1 70 50.0
Duzib187G1533 Durio zibethinus HOM05D001618 ORTHO05D001486 1.1e-07 59.7 67 47.8
Medtr8g022380 Medicago truncatula HOM05D001618 ORTHO05D001486 1.1e-07 59.7 56 53.6
Sc08g0009120 Simmondsia chinensis HOM05D001618 ORTHO05D001486 1.1e-07 59.7 39 69.2
SGA_v2.0_scaffold296G47574 Striga asiatica HOM05D001618 ORTHO05D001486 1.1e-07 59.7 69 53.6
Thecc.09G070700 Theobroma cacao HOM05D001618 ORTHO05D001486 1.1e-07 59.7 67 49.3
CAN.G275.4 Capsicum annuum HOM05D001618 ORTHO05D001486 1.5e-07 59.3 38 68.4
Cpa.g.sc25.171 Carica papaya HOM05D001618 ORTHO05D001486 1.5e-07 59.3 34 73.5
Cfa003492 Carpinus fangiana HOM05D001618 ORTHO05D001486 1.5e-07 59.3 51 56.9
Ciclev10026743m.g Citrus clementina HOM05D001618 ORTHO05D001486 1.5e-07 59.3 70 45.7
Glyma.13G113800 Glycine max HOM05D001618 ORTHO05D001486 1.5e-07 59.3 51 56.9
VMungo0331G0986 Vigna mungo HOM05D001618 ORTHO05D001486 1.5e-07 59.3 68 50.0
EL10Ac8g18981 Beta vulgaris HOM05D001618 ORTHO05D001486 2.0e-07 58.9 35 74.3
CANSAT56G1990 Cannabis sativa HOM05D001618 ORTHO05D001486 2.0e-07 58.9 69 44.9
Manes.03G043100 Manihot esculenta HOM05D001618 ORTHO05D001486 2.0e-07 58.9 45 60.0
vmacro17082 Vaccinium macrocarpon HOM05D001618 ORTHO05D001486 2.0e-07 58.9 47 61.7
VMungo1309G1696 Vigna mungo HOM05D001618 ORTHO05D001486 2.0e-07 58.9 38 65.8
Ca_21336_v3 Cicer arietinum L. HOM05D001618 ORTHO05D001486 2.6e-07 58.5 50 58.0
Ca_30967_v3 Cicer arietinum L. HOM05D001618 ORTHO05D001486 2.6e-07 58.5 50 58.0
TAR383G0482 Trochodendron aralioides HOM05D001618 ORTHO05D001486 2.6e-07 58.5 67 47.8
Aqoxy7G04145 Aquilegia oxysepala HOM05D001618 ORTHO05D001486 3.3e-07 58.2 58 44.8
Lalb_Chr23g0276241 Lupinus albus HOM05D001618 ORTHO05D001486 3.3e-07 58.2 37 64.9
Manes.16G092600 Manihot esculenta HOM05D001618 ORTHO05D001486 3.3e-07 58.2 65 46.2
QL05p001985 Quercus lobata HOM05D001618 ORTHO05D001486 3.3e-07 58.2 34 67.6
Haze_16100 Corylus avellana HOM05D001618 ORTHO05D001486 4.4e-07 57.8 52 53.8
Glyma.07G043500 Glycine max HOM05D001618 ORTHO05D001486 4.4e-07 57.8 66 42.4
PGR142G3236 Punica granatum HOM05D001618 ORTHO05D001486 4.4e-07 57.8 41 65.9
RcHm_v2.0_Chr2g0146941 Rosa chinensis HOM05D001618 ORTHO05D001486 4.4e-07 57.8 60 46.7
TPR.G31744 Trifolium pratense HOM05D001618 ORTHO05D001486 4.4e-07 57.8 46 56.5
MSTRG.19430 Avicennia marina HOM05D001618 ORTHO05D001486 5.7e-07 57.4 69 49.3
FAN05G1955 Fragaria x ananassa HOM05D001618 ORTHO05D001486 5.7e-07 57.4 64 46.9
Lj6g0007042 Lotus japonicus HOM05D001618 ORTHO05D001486 5.7e-07 57.4 66 48.5
Lalb_Chr10g0101251 Lupinus albus HOM05D001618 ORTHO05D001486 5.7e-07 57.4 32 68.8
Rhsim12G0212400 Rhododendron simsii HOM05D001618 ORTHO05D001486 5.7e-07 57.4 66 45.5
TPR.G16668 Trifolium pratense HOM05D001618 ORTHO05D001486 5.7e-07 57.4 56 44.6
Duzib168G1557 Durio zibethinus HOM05D001618 ORTHO05D001486 9.7e-07 56.6 67 46.3
FvH4_6g35410 Fragaria vesca HOM05D001618 ORTHO05D001486 9.7e-07 56.6 64 46.9
Prupe.7G192600 Prunus persica HOM05D001618 ORTHO05D001486 9.7e-07 56.6 64 48.4
Duzib160G0080 Durio zibethinus HOM05D001618 ORTHO05D001486 1.3e-06 56.2 34 64.7
FAN09G4802 Fragaria x ananassa HOM05D001618 ORTHO05D001486 1.3e-06 56.2 61 47.5
FAN14G0645 Fragaria x ananassa HOM05D001618 ORTHO05D001486 1.3e-06 56.2 64 46.9
Lj3g0012457 Lotus japonicus HOM05D001618 ORTHO05D001486 1.3e-06 56.2 66 47.0
Lalb_Chr04g0253791 Lupinus albus HOM05D001618 ORTHO05D001486 1.3e-06 56.2 35 62.9
PSO724G1282 Papaver somniferum HOM05D001618 ORTHO05D001486 1.3e-06 56.2 40 57.5
Potri.003G071000 Populus trichocarpa HOM05D001618 ORTHO05D001486 1.3e-06 56.2 56 51.8
Sed0024570 Sechium edule HOM05D001618 ORTHO05D001486 1.3e-06 56.2 68 44.1
CiPaw.01G214100 Carya illinoinensis HOM05D001618 ORTHO05D001486 1.7e-06 55.8 52 48.1
Gohir.A05G137900 Gossypium hirsutum HOM05D001618 ORTHO05D001486 1.7e-06 55.8 34 67.6
Gohir.D05G140000 Gossypium hirsutum HOM05D001618 ORTHO05D001486 1.7e-06 55.8 34 67.6
Gorai.009G144300 Gossypium raimondii HOM05D001618 ORTHO05D001486 1.7e-06 55.8 34 67.6
Os08g0452500 Oryza sativa ssp. japonica HOM05D001618 ORTHO05D001486 1.7e-06 55.8 34 67.6
Prupe.3G035000 Prunus persica HOM05D001618 ORTHO05D001486 1.7e-06 55.8 58 50.0
TAR626G0752 Trochodendron aralioides HOM05D001618 ORTHO05D001486 1.7e-06 55.8 31 67.7
Gohir.D05G037300 Gossypium hirsutum HOM05D001618 ORTHO05D001486 2.2e-06 55.5 66 50.0
Lalb_Chr17g0343371 Lupinus albus HOM05D001618 ORTHO05D001486 2.2e-06 55.5 68 39.7
Zm00001eb040610 Zea mays HOM05D001618 ORTHO05D001486 2.2e-06 55.5 34 67.6
Ah.09g229040 Amaranthus hybridus HOM05D001618 ORTHO05D001486 2.8e-06 55.1 48 54.2
COL.COLO4_30830 Corchorus olitorius HOM05D001618 ORTHO05D001486 2.8e-06 55.1 67 41.8
HanXRQChr04g0125361 Helianthus annuus HOM05D001618 ORTHO05D001486 2.8e-06 55.1 56 51.8
Lsat_1_v5_gn_8_85101 Lactuca sativa HOM05D001618 ORTHO05D001486 2.8e-06 55.1 52 51.9
MD15G1223100 Malus domestica HOM05D001618 ORTHO05D001486 2.8e-06 55.1 66 42.4
PSO135G0354 Papaver somniferum HOM05D001618 ORTHO05D001486 2.8e-06 55.1 40 55.0
Zm00001eb040680 Zea mays HOM05D001618 ORTHO05D001486 2.8e-06 55.1 34 70.6
Zm00001eb313920 Zea mays HOM05D001618 ORTHO05D001486 2.8e-06 55.1 32 68.8
MELO3C022688.2 Cucumis melo HOM05D001618 ORTHO05D001486 3.7e-06 54.7 32 68.8
Migut.J00890 Erythranthe guttata HOM05D001618 ORTHO05D001486 3.7e-06 54.7 69 47.8
FvH4_1g09300 Fragaria vesca HOM05D001618 ORTHO05D001486 3.7e-06 54.7 53 54.7
FAN19G1553 Fragaria x ananassa HOM05D001618 ORTHO05D001486 3.7e-06 54.7 53 54.7
Glyma.16G011900 Glycine max HOM05D001618 ORTHO05D001486 3.7e-06 54.7 66 45.5
MD07G1220700 Malus domestica HOM05D001618 ORTHO05D001486 3.7e-06 54.7 66 45.5
SGA_v2.0_scaffold281G46916 Striga asiatica HOM05D001618 ORTHO05D001486 3.7e-06 54.7 72 48.6
Thecc.06G127100 Theobroma cacao HOM05D001618 ORTHO05D001486 3.7e-06 54.7 34 61.8
CSS0017690 Camellia sinensis var. sinensis HOM05D001618 ORTHO05D001486 4.8e-06 54.3 32 68.8
CSS0034956 Camellia sinensis var. sinensis HOM05D001618 ORTHO05D001486 4.8e-06 54.3 32 68.8
Duzib235G0314 Durio zibethinus HOM05D001618 ORTHO05D001486 4.8e-06 54.3 34 64.7
Gohir.A05G035800 Gossypium hirsutum HOM05D001618 ORTHO05D001486 4.8e-06 54.3 66 48.5
Gorai.009G037800 Gossypium raimondii HOM05D001618 ORTHO05D001486 4.8e-06 54.3 64 48.4
MBI19_g37997_MAGBIO Magnolia biondii HOM05D001618 ORTHO05D001486 4.8e-06 54.3 65 46.2
Lj4g0006286 Lotus japonicus HOM05D001618 ORTHO05D001486 6.3e-06 53.9 71 47.9
Medtr4g124700 Medicago truncatula HOM05D001618 ORTHO05D001486 6.3e-06 53.9 42 61.9
Phvul.003G127650 Phaseolus vulgaris HOM05D001618 ORTHO05D001486 6.3e-06 53.9 52 50.0
Sed0028153 Sechium edule HOM05D001618 ORTHO05D001486 6.3e-06 53.9 35 60.0
Sc18g0002830 Simmondsia chinensis HOM05D001618 ORTHO05D001486 6.3e-06 53.9 66 48.5
VMungo1215G2900 Vigna mungo HOM05D001618 ORTHO05D001486 6.3e-06 53.9 52 50.0
Zm00001eb100000 Zea mays HOM05D001618 ORTHO05D001486 6.3e-06 53.9 32 65.6
CsaV3_7G034130 Cucumis sativus L. HOM05D001618 ORTHO05D001486 8.2e-06 53.5 42 57.1
DCAR_011922 Daucus carota HOM05D001618 ORTHO05D001486 8.2e-06 53.5 71 43.7
FAN02G1579 Fragaria x ananassa HOM05D001618 ORTHO05D001486 8.2e-06 53.5 64 43.8
PSO724G0827 Papaver somniferum HOM05D001618 ORTHO05D001486 8.2e-06 53.5 40 52.5
Sabra03G0041900 Salix brachista HOM05D001618 ORTHO05D001486 8.2e-06 53.5 35 62.9
SGA_v2.0_scaffold21G09551 Striga asiatica HOM05D001618 ORTHO05D001486 8.2e-06 53.5 69 43.5


User provided reference genes

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