Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000072g0050 Nicotiana tabacum HOM05D007579 ORTHO05D014074 5.4e-71 270.8 127 100.0
Nitab4.5_0002600g0030 Nicotiana tabacum HOM05D007579 ORTHO05D000285 4.0e-66 254.6 127 95.3
Nitab4.5_0000915g0040 Nicotiana tabacum HOM05D007579 ORTHO05D000285 6.0e-62 240.7 127 90.6
Nitab4.5_0000062g0080 Nicotiana tabacum HOM05D007579 ORTHO05D000285 6.8e-58 227.3 136 81.6
Nitab4.5_0001872g0050 Nicotiana tabacum HOM05D007579 ORTHO05D014074 1.9e-52 209.1 127 83.5
Nitab4.5_0000506g0250 Nicotiana tabacum HOM05D007579 ORTHO05D000285 9.6e-52 206.8 132 78.8
Nitab4.5_0000545g0010 Nicotiana tabacum HOM05D007579 ORTHO05D014074 1.4e-50 203.0 136 75.7
Nitab4.5_0003230g0090 Nicotiana tabacum HOM05D007579 ORTHO05D000285 8.4e-48 193.7 141 69.5
Nitab4.5_0005324g0060 Nicotiana tabacum HOM05D007579 ORTHO05D000285 1.4e-34 149.8 92 80.4
Solyc10g049530.3 Solanum lycopersicum HOM05D000034 ORTHO05D000037 4.9e-32 141.4 143 51.7
Nitab4.5_0000297g0280 Nicotiana tabacum HOM05D007579 ORTHO05D000285 7.9e-30 134.0 71 88.7
Nitab4.5_0003500g0030 Nicotiana tabacum HOM05D007579 ORTHO05D000037 1.6e-22 109.8 121 49.6
Solyc04g054153.1 Solanum lycopersicum HOM05D000034 ORTHO05D000037 1.6e-19 99.8 76 67.1
Nitab4.5_0001614g0220 Nicotiana tabacum HOM05D007579 ORTHO05D014074 6.3e-19 97.8 56 80.4
Solyc12g150115.1 Solanum lycopersicum HOM05D000034 ORTHO05D000037 6.3e-19 97.8 77 64.9
Peaxi162Scf00002g02220 Petunia axillaris HOM05D000876 ORTHO05D000285 1.1e-18 97.1 107 46.7
Nitab4.5_0028034g0010 Nicotiana tabacum HOM05D007579 ORTHO05D000285 5.3e-18 94.7 47 93.6
Nitab4.5_0001611g0070 Nicotiana tabacum HOM05D007579 ORTHO05D000285 1.2e-17 93.6 47 91.5
Nitab4.5_0013645g0010 Nicotiana tabacum HOM05D007579 ORTHO05D014074 4.5e-17 91.7 45 93.3
Nitab4.5_0020090g0010 Nicotiana tabacum HOM05D007579 ORTHO05D000285 1.0e-16 90.5 47 91.5
Nitab4.5_0006822g0050 Nicotiana tabacum HOM05D007579 ORTHO05D000285 1.7e-16 89.7 47 89.4
Nitab4.5_0012930g0020 Nicotiana tabacum HOM05D007579 ORTHO05D000285 5.0e-16 88.2 47 89.4
Nitab4.5_0008299g0010 Nicotiana tabacum HOM05D007579 ORTHO05D000285 1.6e-14 83.2 47 83.0
Peaxi162Scf00201g01410 Petunia axillaris HOM05D007579 ORTHO05D000037 2.7e-14 82.4 72 59.7
arahy.Tifrunner.gnm1.ann1.PEG6DJ Arachis hypogaea HOM05D000034 ORTHO05D000037 3.6e-14 82.0 138 34.1
arahy.Tifrunner.gnm1.ann1.Z2QP4M Arachis hypogaea HOM05D000034 ORTHO05D000037 6.1e-14 81.3 143 33.6
Peaxi162Scf00973g00318 Petunia axillaris HOM05D000034 ORTHO05D000037 6.1e-14 81.3 55 69.1
Nitab4.5_0003708g0020 Nicotiana tabacum HOM05D007579 ORTHO05D000285 7.9e-14 80.9 47 83.0
arahy.Tifrunner.gnm1.ann1.GG5U8X Arachis hypogaea HOM05D000876 ORTHO05D000285 3.9e-13 78.6 143 32.2
arahy.Tifrunner.gnm1.ann1.AG0B9Q Arachis hypogaea HOM05D000034 ORTHO05D000285 5.1e-13 78.2 153 30.7
arahy.Tifrunner.gnm1.ann1.L4SQ9F Arachis hypogaea HOM05D000034 ORTHO05D000037 8.8e-13 77.4 143 30.8
Lsat_1_v5_gn_9_80960 Lactuca sativa HOM05D009382 ORTHO05D000285 8.8e-13 77.4 124 37.1
Nitab4.5_0002745g0020 Nicotiana tabacum HOM05D007579 ORTHO05D000285 1.1e-12 77.0 127 36.2
Nitab4.5_0002535g0050 Nicotiana tabacum HOM05D007579 ORTHO05D000285 1.5e-12 76.6 70 58.6
arahy.Tifrunner.gnm1.ann1.X5RLQI Arachis hypogaea HOM05D000034 ORTHO05D000285 2.5e-12 75.9 148 30.4
Nitab4.5_0000801g0060 Nicotiana tabacum HOM05D007579 ORTHO05D000285 5.7e-12 74.7 74 51.4
Solyc04g049020.3 Solanum lycopersicum HOM05D000034 ORTHO05D000037 5.7e-12 74.7 42 81.0
arahy.Tifrunner.gnm1.ann1.U3ELQH Arachis hypogaea HOM05D000034 ORTHO05D000037 1.3e-11 73.6 131 32.8
Nitab4.5_0000369g0070 Nicotiana tabacum HOM05D007579 ORTHO05D014074 2.2e-11 72.8 107 41.1
arahy.Tifrunner.gnm1.ann1.NV9TN2 Arachis hypogaea HOM05D000034 ORTHO05D000037 4.8e-11 71.6 127 33.9
arahy.Tifrunner.gnm1.ann1.GL17HH Arachis hypogaea HOM05D000034 ORTHO05D000037 8.2e-11 70.9 150 30.7
Nitab4.5_0002432g0060 Nicotiana tabacum HOM05D007579 ORTHO05D000285 2.4e-10 69.3 34 91.2
arahy.Tifrunner.gnm1.ann1.2911W9 Arachis hypogaea HOM05D000876 ORTHO05D000285 3.1e-10 68.9 137 30.7
Lj1g0007225 Lotus japonicus HOM05D000034 ORTHO05D000037 3.1e-10 68.9 123 30.1
Nitab4.5_0000359g0120 Nicotiana tabacum HOM05D007579 ORTHO05D000285 3.1e-10 68.9 113 39.8
DCAR_005487 Daucus carota HOM05D000034 ORTHO05D000037 5.3e-10 68.2 72 43.1
arahy.Tifrunner.gnm1.ann1.JE1DTX Arachis hypogaea HOM05D000034 ORTHO05D000037 2.0e-09 66.2 116 34.5
Atru.chr2.2393 Acer truncatum HOM05D000034 ORTHO05D000037 2.6e-09 65.9 126 27.8
arahy.Tifrunner.gnm1.ann1.01IP25 Arachis hypogaea HOM05D000034 ORTHO05D000037 3.4e-09 65.5 142 29.6
FvH4_3g21471 Fragaria vesca HOM05D000034 ORTHO05D000285 3.4e-09 65.5 126 31.7
Gorai.005G210300 Gossypium raimondii HOM05D000034 ORTHO05D000037 7.7e-09 64.3 82 36.6
TPR.G21292 Trifolium pratense HOM05D000034 ORTHO05D014074 1.7e-08 63.2 80 41.2
arahy.Tifrunner.gnm1.ann1.7Y6611 Arachis hypogaea HOM05D000034 ORTHO05D000037 2.2e-08 62.8 140 29.3
Atru.chr1.1505 Acer truncatum HOM05D000034 ORTHO05D000037 2.9e-08 62.4 78 38.5
arahy.Tifrunner.gnm1.ann1.6D5SIE Arachis hypogaea HOM05D000034 ORTHO05D000037 2.9e-08 62.4 67 44.8
FAN03G1971 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.8e-08 62.0 64 43.8
arahy.Tifrunner.gnm1.ann1.CEZB18 Arachis hypogaea HOM05D000034 ORTHO05D000037 5.0e-08 61.6 126 29.4
PGSC0003DMG400041016 Solanum tuberosum HOM05D007579 ORTHO05D000285 5.0e-08 61.6 47 53.2
Atru.chr10.1596 Acer truncatum HOM05D000034 ORTHO05D000037 6.5e-08 61.2 64 40.6
arahy.Tifrunner.gnm1.ann1.Z5ZQ3Q Arachis hypogaea HOM05D000034 ORTHO05D000037 6.5e-08 61.2 75 41.3
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 6.5e-08 61.2 84 36.9
arahy.Tifrunner.gnm1.ann1.B5SYFK Arachis hypogaea HOM05D000034 ORTHO05D000037 8.5e-08 60.8 64 50.0
FAN15G0148 Fragaria x ananassa HOM05D000876 ORTHO05D000285 8.5e-08 60.8 126 27.0
Nitab4.5_0000059g0630 Nicotiana tabacum HOM05D007579 ORTHO05D000285 8.5e-08 60.8 97 38.1
arahy.Tifrunner.gnm1.ann1.5VN1MT Arachis hypogaea HOM05D000034 ORTHO05D000037 1.1e-07 60.5 64 48.4
FAN21G0561 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.1e-07 60.5 119 31.9
Gorai.010G169600 Gossypium raimondii HOM05D000034 ORTHO05D000037 1.1e-07 60.5 82 35.4
FvH4_3g29911 Fragaria vesca HOM05D000034 ORTHO05D000037 1.4e-07 60.1 80 38.8
Peaxi162Scf00973g00320 Petunia axillaris HOM05D007579 ORTHO05D000285 1.4e-07 60.1 47 59.6
Hma1.2p1_0148F.1_g066085 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.9e-07 59.7 41 58.5
Hma1.2p1_0344F.1_g131060 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.9e-07 59.7 68 44.1
FvH4_6g30381 Fragaria vesca HOM05D000034 ORTHO05D000037 3.2e-07 58.9 70 42.9
arahy.Tifrunner.gnm1.ann1.6EI20W Arachis hypogaea HOM05D000034 ORTHO05D000037 4.2e-07 58.5 77 37.7
arahy.Tifrunner.gnm1.ann1.GU7PJV Arachis hypogaea HOM05D000034 ORTHO05D014074 4.2e-07 58.5 70 41.4
arahy.Tifrunner.gnm1.ann1.UAK3YW Arachis hypogaea HOM05D000034 ORTHO05D014074 4.2e-07 58.5 70 41.4
FvH4_4g30624 Fragaria vesca HOM05D000034 ORTHO05D000037 4.2e-07 58.5 64 43.8
arahy.Tifrunner.gnm1.ann1.HDS2CW Arachis hypogaea HOM05D000034 ORTHO05D000037 5.5e-07 58.2 67 43.3
RcHm_v2.0_Chr2g0103971 Rosa chinensis HOM05D000034 ORTHO05D000037 5.5e-07 58.2 64 42.2
PGSC0003DMG400037326 Solanum tuberosum HOM05D007579 ORTHO05D000285 5.5e-07 58.2 47 48.9
AUR62009279 Chenopodium quinoa HOM05D000034 ORTHO05D000037 7.2e-07 57.8 45 57.8
PSO455G0007 Papaver somniferum HOM05D000034 ORTHO05D000037 9.4e-07 57.4 87 40.2
TPR.G31033 Trifolium pratense HOM05D000034 ORTHO05D000037 9.4e-07 57.4 116 27.6
arahy.Tifrunner.gnm1.ann1.W21WHR Arachis hypogaea HOM05D000034 ORTHO05D000037 1.2e-06 57.0 94 34.0
FvH4_1g10461 Fragaria vesca HOM05D000034 ORTHO05D000037 1.2e-06 57.0 80 37.5
Peaxi162Scf00174g00006 Petunia axillaris HOM05D007579 ORTHO05D000285 1.2e-06 57.0 46 54.3
TAR080G0001 Trochodendron aralioides HOM05D000034 ORTHO05D000037 1.2e-06 57.0 101 34.7
arahy.Tifrunner.gnm1.ann1.B3GXWW Arachis hypogaea HOM05D000034 ORTHO05D000037 1.6e-06 56.6 68 42.6
arahy.Tifrunner.gnm1.ann1.H5LE2R Arachis hypogaea HOM05D000034 ORTHO05D000037 1.6e-06 56.6 68 42.6
arahy.Tifrunner.gnm1.ann1.TEB0R7 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.6e-06 56.6 68 42.6
Hma1.2p1_0344F.1_g131050 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.6e-06 56.6 68 42.6
Lj1g0002194 Lotus japonicus HOM05D000034 ORTHO05D000037 1.6e-06 56.6 42 54.8
Lj3g0012091 Lotus japonicus HOM05D000034 ORTHO05D000037 1.6e-06 56.6 42 54.8
Lj6g0006348 Lotus japonicus HOM05D000034 ORTHO05D000037 1.6e-06 56.6 42 54.8
Nitab4.5_0001796g0010 Nicotiana tabacum HOM05D007579 ORTHO05D000285 1.6e-06 56.6 36 75.0
arahy.Tifrunner.gnm1.ann1.8YPI5A Arachis hypogaea HOM05D000034 ORTHO05D000037 2.1e-06 56.2 75 38.7
arahy.Tifrunner.gnm1.ann1.HX9YJ4 Arachis hypogaea HOM05D000034 ORTHO05D000037 2.1e-06 56.2 78 41.0
CANSAT01G2719 Cannabis sativa HOM05D000034 ORTHO05D000037 2.1e-06 56.2 70 37.1
CANSAT78G1769 Cannabis sativa HOM05D000034 ORTHO05D000037 2.1e-06 56.2 70 37.1
FvH4_4g20922 Fragaria vesca HOM05D000034 ORTHO05D000037 2.1e-06 56.2 64 39.1
FvH4_5g23912 Fragaria vesca HOM05D000034 ORTHO05D000037 2.1e-06 56.2 64 39.1
Atru.chr1.2793 Acer truncatum HOM05D000034 ORTHO05D000037 2.7e-06 55.8 41 53.7
arahy.Tifrunner.gnm1.ann1.UAQH0I Arachis hypogaea HOM05D000034 ORTHO05D000037 2.7e-06 55.8 68 44.1
PSO170G6048 Papaver somniferum HOM05D000034 ORTHO05D000037 2.7e-06 55.8 72 41.7
arahy.Tifrunner.gnm1.ann1.EDF0S4 Arachis hypogaea HOM05D000034 ORTHO05D014074 3.6e-06 55.5 114 31.6
CANSAT01G2537 Cannabis sativa HOM05D000034 ORTHO05D000037 3.6e-06 55.5 70 37.1
Lj1g0024931 Lotus japonicus HOM05D000034 ORTHO05D000037 3.6e-06 55.5 42 54.8
Nitab4.5_0002588g0030 Nicotiana tabacum HOM05D007579 ORTHO05D000285 3.6e-06 55.5 56 48.2
CANSAT01G0970 Cannabis sativa HOM05D000034 ORTHO05D000037 4.7e-06 55.1 73 38.4
CANSAT54G0349 Cannabis sativa HOM05D000034 ORTHO05D000037 4.7e-06 55.1 73 38.4
Rhsim03G0151700 Rhododendron simsii HOM05D000114 ORTHO05D000037 4.7e-06 55.1 87 32.2
Atru.chr13.2003 Acer truncatum HOM05D000034 ORTHO05D000037 6.1e-06 54.7 41 53.7
arahy.Tifrunner.gnm1.ann1.9LP8WG Arachis hypogaea HOM05D000034 ORTHO05D000037 6.1e-06 54.7 41 51.2
arahy.Tifrunner.gnm1.ann1.Y4Z60F Arachis hypogaea HOM05D000034 ORTHO05D000037 6.1e-06 54.7 67 43.3
CANSAT25G0317 Cannabis sativa HOM05D000034 ORTHO05D000037 6.1e-06 54.7 41 53.7
CANSAT25G1749 Cannabis sativa HOM05D000034 ORTHO05D000037 6.1e-06 54.7 41 53.7
CANSAT56G4166 Cannabis sativa HOM05D000034 ORTHO05D000037 6.1e-06 54.7 41 53.7
ECA234G2067 Erigeron canadensis HOM05D000034 ORTHO05D000037 6.1e-06 54.7 76 36.8
Lj1g0006711 Lotus japonicus HOM05D000034 ORTHO05D000037 6.1e-06 54.7 45 46.7
arahy.Tifrunner.gnm1.ann1.LLG7R0 Arachis hypogaea HOM05D000034 ORTHO05D000037 7.9e-06 54.3 67 41.8
CANSAT64G2926 Cannabis sativa HOM05D000034 ORTHO05D000037 7.9e-06 54.3 49 44.9
CANSAT78G0685 Cannabis sativa HOM05D000034 ORTHO05D000037 7.9e-06 54.3 69 36.2
Nitab4.5_0003679g0100 Nicotiana tabacum HOM05D007579 ORTHO05D000285 7.9e-06 54.3 44 50.0
PSO339G0716 Papaver somniferum HOM05D000034 ORTHO05D000037 7.9e-06 54.3 87 39.1


User provided reference genes

Program Settings