Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.7e-291 1003.8 514 100.0
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.1e-287 990.7 514 98.4
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 4.8e-259 897.5 520 89.2
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 7.6e-257 890.2 514 89.3
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 2.0e-241 839.0 521 84.3
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 4.4e-220 768.1 527 74.6
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 1.7e-211 739.6 524 74.0
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 3.1e-210 735.3 466 79.2
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 2.0e-209 732.6 526 73.4
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 3.5e-209 731.9 536 70.0
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 7.7e-209 730.7 521 72.2
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 2.9e-208 728.8 522 73.4
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 8.5e-208 727.2 525 71.8
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 3.2e-207 725.3 522 73.2
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 5.5e-207 724.5 521 72.4
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 5.5e-207 724.5 523 70.9
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.2e-206 723.4 525 71.2
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.6e-206 723.0 529 73.0
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.6e-206 723.0 521 72.2
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 3.6e-206 721.8 531 71.8
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 6.8e-205 717.6 515 72.8
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.6e-204 715.7 536 69.0
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 3.4e-204 715.3 518 70.3
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 3.4e-204 715.3 433 83.1
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 2.2e-203 712.6 530 69.2
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 4.1e-202 708.4 462 76.0
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 1.2e-201 706.8 525 70.1
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.6e-201 706.4 431 79.8
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.0e-200 703.7 523 70.7
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 2.2e-200 702.6 523 70.6
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 2.5e-199 699.1 400 89.5
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 9.4e-199 697.2 548 67.2
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.6e-198 696.4 453 77.5
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 3.6e-198 695.3 548 67.2
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 8.0e-198 694.1 521 70.1
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 8.0e-198 694.1 521 70.1
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 8.0e-198 694.1 525 69.1
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.0e-197 693.7 531 68.5
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 2.3e-197 692.6 523 69.0
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 3.0e-197 692.2 517 71.2
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 8.8e-197 690.6 519 69.2
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.5e-196 689.9 520 69.6
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.5e-196 689.9 517 70.0
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 2.6e-196 689.1 518 68.3
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.4e-196 688.7 517 70.0
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 5.7e-196 688.0 525 69.3
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 5.7e-196 688.0 523 69.2
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 3.7e-195 685.3 433 78.8
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 4.8e-195 684.9 452 74.8
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.1e-194 683.7 450 74.0
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 1.1e-194 683.7 526 68.6
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 1.8e-194 682.9 526 68.8
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.4e-194 682.6 531 68.4
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 2.7e-193 679.1 506 69.8
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 7.7e-193 677.6 536 66.8
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 8.6e-192 674.1 523 66.9
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 1.5e-191 673.3 591 61.6
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 2.5e-191 672.5 530 67.0
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 5.5e-191 671.4 531 67.0
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 2.1e-190 669.5 530 65.3
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 2.8e-190 669.1 522 68.6
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 1.5e-188 663.3 530 66.2
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.5e-188 663.3 401 81.3
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.4e-186 656.8 449 72.4
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 2.7e-185 652.5 528 65.3
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 7.8e-185 651.0 528 64.6
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 1.2e-182 643.7 514 66.9
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 2.3e-181 639.4 529 64.1
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 2.3e-181 639.4 805 48.1
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 4.0e-181 638.6 490 66.3
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 5.2e-181 638.3 466 69.1
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.2e-180 637.1 526 64.3
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 2.0e-180 636.3 529 63.5
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 2.9e-179 632.5 526 63.7
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 2.9e-179 632.5 526 63.7
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 1.9e-178 629.8 517 65.2
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 1.6e-177 626.7 528 62.9
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 2.0e-177 626.3 518 63.1
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 2.7e-177 625.9 542 62.2
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 7.8e-177 624.4 523 63.9
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 1.3e-176 623.6 527 62.8
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 2.3e-176 622.9 529 63.1
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 6.6e-176 621.3 518 62.7
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 1.5e-175 620.2 528 62.3
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 1.9e-175 619.8 520 62.7
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 1.9e-175 619.8 518 62.9
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 7.3e-175 617.8 544 59.6
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 2.3e-173 612.8 546 59.5
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.1e-170 604.0 403 74.4
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.7e-169 599.4 410 72.2
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 3.5e-169 599.0 390 76.2
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 3.5e-169 599.0 392 75.8
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 3.3e-167 592.4 511 63.2
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 1.9e-162 576.6 454 65.2
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 6.0e-161 571.6 479 64.3
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 3.9e-160 568.9 466 62.7
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 5.1e-160 568.5 453 64.0
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 8.6e-160 567.8 547 57.4
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 4.7e-158 562.0 422 70.4
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 1.8e-157 560.1 465 63.2
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 2.4e-157 559.7 432 66.9
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 2.0e-156 556.6 529 58.4
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 6.4e-155 551.6 411 70.3
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.9e-154 550.1 576 53.1
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 7.1e-154 548.1 531 58.4
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 1.2e-148 530.8 555 53.9
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 1.5e-140 503.8 479 55.7
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 5.8e-140 501.9 519 57.4
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 4.9e-139 498.8 451 59.4
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 4.9e-131 472.2 535 51.2
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 4.6e-129 465.7 466 53.0
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 4.1e-125 452.6 468 51.3
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 8.2e-118 428.3 408 57.8
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 8.5e-115 418.3 449 51.4
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 2.5e-114 416.8 548 46.0
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 6.5e-91 339.0 282 67.7
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 8.5e-91 338.6 438 44.7
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 1.0e-88 331.6 443 42.9
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.5e-87 327.8 216 73.6
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 2.8e-86 323.6 299 56.5
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 5.0e-83 312.8 365 49.6
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 7.2e-82 308.9 399 48.6
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 7.0e-77 292.4 502 37.3
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 2.1e-73 280.8 229 67.2
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 2.0e-60 237.7 187 65.2
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 2.3e-56 224.2 445 39.6
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.4e-53 214.2 158 67.1
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.6e-52 211.5 159 62.9
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 4.6e-52 209.9 267 46.1
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 1.1e-50 205.3 116 90.5
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.2e-47 195.3 246 46.3
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.4e-47 193.7 246 45.5
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-37 161.8 241 43.6
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 3.2e-37 160.6 127 71.7
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 1.2e-36 158.7 122 68.0
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 6.0e-36 156.4 145 57.2
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.0e-36 156.4 355 32.4
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 1.0e-35 155.6 250 42.0
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 3.0e-35 154.1 97 79.4
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 6.6e-35 152.9 243 42.4
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.5e-34 151.0 138 58.0
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.6e-33 147.1 101 74.3
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.1e-32 145.6 101 73.3
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-32 145.6 176 50.0
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 2.6e-31 141.0 100 67.0
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 6.4e-30 136.3 116 60.3
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.2e-29 133.7 135 54.1
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 8.7e-27 125.9 149 51.0
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 4.0e-24 117.1 79 72.2
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 4.5e-23 113.6 131 54.2
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 8.4e-22 109.4 221 36.2
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 8.4e-22 109.4 221 36.2
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 1.2e-20 105.5 235 34.0
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 4.3e-18 97.1 64 76.6
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.8e-16 91.7 63 68.3
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 4.0e-16 90.5 153 34.6
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 9.0e-16 89.4 94 44.7
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.2e-15 89.0 63 66.7
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.3e-11 74.7 68 55.9
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 7.4e-10 69.7 116 41.4
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 1.7e-06 58.5 43 72.1
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 2.2e-06 58.2 37 75.7
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 2.2e-06 58.2 38 63.2
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 2.2e-06 58.2 38 63.2
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 2.2e-06 58.2 38 63.2
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 2.2e-06 58.2 37 75.7
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 2.2e-06 58.2 38 63.2
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 2.2e-06 58.2 37 75.7


User provided reference genes

Program Settings