Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.2e-211 739.6 369 100.0
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 8.5e-125 451.1 292 81.2
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 1.0e-117 427.6 296 74.3
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 1.3e-117 427.2 296 74.3
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 1.1e-116 424.1 296 74.7
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 2.7e-115 419.5 295 73.2
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 6.1e-115 418.3 292 72.9
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 8.8e-114 414.5 296 72.3
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.5e-113 413.7 296 73.3
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 1.5e-113 413.7 296 73.3
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 7.4e-113 411.4 296 71.6
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 3.7e-112 409.1 295 71.2
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 1.1e-111 407.5 295 71.2
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 5.9e-110 401.7 293 70.3
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 5.9e-110 401.7 293 70.3
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 5.9e-110 401.7 295 69.8
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 5.9e-110 401.7 295 70.2
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 5.9e-110 401.7 295 70.8
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 7.7e-110 401.4 295 70.5
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 1.3e-109 400.6 295 70.5
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 1.1e-108 397.5 295 70.2
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 2.5e-108 396.4 292 69.9
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 5.5e-108 395.2 296 68.6
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 7.2e-108 394.8 294 69.7
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 7.2e-108 394.8 325 64.3
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 7.2e-108 394.8 292 69.5
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 9.4e-108 394.4 294 69.4
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 9.4e-108 394.4 297 69.7
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 1.2e-107 394.0 295 69.2
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 1.6e-107 393.7 295 68.8
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 1.4e-106 390.6 292 69.5
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 3.0e-106 389.4 331 61.3
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 5.2e-106 388.7 298 67.1
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 6.7e-106 388.3 298 67.1
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 6.7e-106 388.3 292 68.2
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 8.8e-106 387.9 296 67.9
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 8.8e-106 387.9 295 67.5
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 8.8e-106 387.9 293 68.3
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 8.8e-106 387.9 293 68.6
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 1.1e-105 387.5 292 68.5
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.1e-105 387.5 296 65.9
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 3.3e-105 386.0 293 67.9
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 4.4e-105 385.6 293 68.9
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 5.7e-105 385.2 296 66.9
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 5.7e-105 385.2 324 62.0
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 9.7e-105 384.4 292 67.8
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 9.7e-105 384.4 293 67.9
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 1.3e-104 384.0 295 67.1
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.3e-104 384.0 314 64.6
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 1.3e-104 384.0 293 67.9
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.7e-104 383.6 312 65.1
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 1.7e-104 383.6 296 66.2
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 2.2e-104 383.3 295 66.1
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 2.2e-104 383.3 308 65.9
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 2.8e-104 382.9 327 61.8
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 3.7e-104 382.5 292 67.8
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 3.7e-104 382.5 295 67.1
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 4.8e-104 382.1 298 65.4
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 4.8e-104 382.1 308 65.6
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 4.8e-104 382.1 293 66.9
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 6.3e-104 381.7 295 66.4
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 1.1e-103 380.9 292 67.8
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 1.4e-103 380.6 293 67.6
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 1.8e-103 380.2 292 67.1
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.4e-103 379.8 302 65.6
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 3.1e-103 379.4 300 65.7
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 3.1e-103 379.4 296 66.2
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 4.1e-103 379.0 292 67.1
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 9.1e-103 377.9 334 60.2
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 2.0e-102 376.7 293 66.6
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 2.0e-102 376.7 300 65.3
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 2.0e-102 376.7 293 65.5
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 2.6e-102 376.3 293 66.6
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 3.5e-102 375.9 292 67.1
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.5e-102 375.6 302 64.6
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 7.7e-102 374.8 292 66.4
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 1.0e-101 374.4 294 66.7
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 1.7e-101 373.6 293 67.2
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 2.2e-101 373.2 296 65.5
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 2.9e-101 372.9 293 66.2
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 8.5e-101 371.3 295 65.4
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.1e-100 370.9 326 61.0
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.5e-100 370.5 329 60.2
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.9e-100 370.2 329 60.5
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 3.2e-100 369.4 293 65.9
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 7.2e-100 368.2 292 65.8
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 7.2e-100 368.2 293 66.6
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 2.7e-99 366.3 298 63.8
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 2.7e-99 366.3 292 65.1
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 4.7e-99 365.5 317 59.9
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 1.8e-98 363.6 275 66.2
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 8.8e-98 361.3 311 60.8
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 4.8e-96 355.5 299 61.2
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 6.3e-96 355.1 276 65.9
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 6.3e-96 355.1 312 61.9
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 2.0e-94 350.1 292 62.0
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 2.2e-93 346.7 298 62.8
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 2.2e-93 346.7 292 61.0
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 3.8e-93 345.9 296 61.8
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.7e-91 339.7 348 54.0
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 2.3e-90 336.7 276 64.1
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 4.4e-89 332.4 276 63.0
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 2.0e-86 323.6 302 56.6
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 2.0e-86 323.6 325 55.4
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 3.5e-86 322.8 315 54.0
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 3.8e-85 319.3 293 59.7
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 5.0e-85 318.9 292 57.2
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 3.3e-84 316.2 312 56.7
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 1.6e-83 313.9 253 65.6
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 2.3e-82 310.1 296 58.4
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 4.0e-82 309.3 295 56.6
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 1.3e-80 304.3 239 66.1
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 1.8e-79 300.4 295 53.2
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 7.8e-78 295.0 238 65.1
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 4.3e-76 289.3 321 47.4
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 9.5e-76 288.1 226 68.6
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.0e-74 284.6 283 55.5
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 1.8e-74 283.9 296 53.0
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 3.7e-72 276.2 302 51.0
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 3.2e-71 273.1 223 65.5
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.0e-69 268.1 253 55.7
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 6.6e-69 265.4 214 64.5
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 1.6e-67 260.8 295 50.8
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.4e-66 257.7 229 58.1
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 1.4e-66 257.7 276 54.0
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 1.7e-64 250.8 304 48.0
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 2.4e-63 246.9 152 77.6
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 3.3e-60 236.5 140 80.7
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 5.6e-60 235.7 221 60.2
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 1.1e-58 231.5 213 59.2
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 1.8e-50 204.1 148 70.3
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 2.6e-49 200.3 115 81.7
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 2.6e-49 200.3 115 81.7
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 2.9e-48 196.8 117 79.5
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 3.8e-48 196.4 117 80.3
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 1.2e-46 191.4 159 62.9
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 2.7e-46 190.3 294 38.8
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 3.5e-46 189.9 207 52.7
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.9e-36 157.5 103 73.8
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.5e-36 157.1 142 55.6
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 9.6e-36 155.2 151 58.3
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 3.2e-31 140.2 115 60.9
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 7.1e-31 139.0 115 64.3
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 7.9e-30 135.6 86 72.1
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.3e-27 128.3 168 40.5
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 3.7e-27 126.7 140 52.1
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 7.6e-25 119.0 74 81.1
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 8.4e-24 115.5 90 66.7
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 6.0e-22 109.4 71 73.2
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 6.0e-22 109.4 101 56.4
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 1.0e-21 108.6 70 75.7
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 1.5e-20 104.8 72 68.1
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.8e-17 92.8 73 63.0
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 1.7e-16 91.3 52 80.8
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 1.7e-16 91.3 52 80.8
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 1.1e-15 88.6 222 29.3
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 7.9e-14 82.4 113 42.5
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 6.7e-13 79.3 50 72.0
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 8.7e-13 79.0 54 68.5
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 2.4e-10 70.9 185 34.1
SEGI_21930 Sequoiadendron giganteum HOM05D004449 ORTHO05D386504 3.2e-07 60.5 63 52.4
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 7.9e-06 55.8 34 67.6


User provided reference genes

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