Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 2.8e-67 258.5 129 100.0
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.3e-64 249.6 128 96.1
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 2.3e-53 212.2 108 98.1
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 3.3e-52 208.4 108 95.4
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 3.3e-52 208.4 108 95.4
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 1.8e-50 202.6 105 95.2
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 3.2e-47 191.8 101 96.0
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 8.0e-38 160.6 96 79.2
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 3.0e-37 158.7 96 80.2
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 3.0e-37 158.7 106 72.6
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 4.0e-37 158.3 96 77.1
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.3e-35 153.3 96 79.2
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 1.7e-35 152.9 96 75.0
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 2.2e-35 152.5 96 77.1
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 2.8e-35 152.1 100 72.0
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 6.3e-35 151.0 99 72.7
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 1.1e-34 150.2 96 75.0
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 1.1e-34 150.2 96 75.0
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 1.1e-34 150.2 96 75.0
BcaB06g28779 Brassica carinata HOM05D007099 ORTHO05D009081 1.8e-34 149.4 96 76.0
A04p26440 Brassica napus HOM05D007099 ORTHO05D009081 1.8e-34 149.4 96 76.0
A05p11160 Brassica napus HOM05D007099 ORTHO05D009081 1.8e-34 149.4 96 76.0
C04p63850 Brassica napus HOM05D007099 ORTHO05D009081 1.8e-34 149.4 96 76.0
BolC4t27852H Brassica oleracea HOM05D007099 ORTHO05D009081 1.8e-34 149.4 96 76.0
BraA04t18148Z Brassica rapa HOM05D007099 ORTHO05D009081 1.8e-34 149.4 96 76.0
BraA05t20062Z Brassica rapa HOM05D007099 ORTHO05D009081 1.8e-34 149.4 96 76.0
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 2.4e-34 149.1 96 72.9
BcaC02g11514 Brassica carinata HOM05D007099 ORTHO05D009081 3.1e-34 148.7 96 76.0
C04p14510 Brassica napus HOM05D007099 ORTHO05D009081 3.1e-34 148.7 96 76.0
BolC4t23034H Brassica oleracea HOM05D007099 ORTHO05D009081 3.1e-34 148.7 96 76.0
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 3.1e-34 148.7 100 70.0
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 4.1e-34 148.3 95 74.7
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 4.1e-34 148.3 95 74.7
Sp4g16780 Schrenkiella parvula HOM05D007099 ORTHO05D009081 4.1e-34 148.3 96 75.0
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 4.1e-34 148.3 96 74.0
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 5.4e-34 147.9 96 74.0
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 5.4e-34 147.9 96 74.0
CARHR128610 Cardamine hirsuta HOM05D007099 ORTHO05D009081 5.4e-34 147.9 96 75.0
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 5.4e-34 147.9 95 74.7
AL4G30490 Arabidopsis lyrata HOM05D007099 ORTHO05D009081 7.0e-34 147.5 96 74.0
Carub.0004s1619 Capsella rubella HOM05D007099 ORTHO05D009081 9.1e-34 147.1 96 74.0
Thhalv10017324m.g Eutrema salsugineum HOM05D007099 ORTHO05D009081 9.1e-34 147.1 96 74.0
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 9.1e-34 147.1 95 73.7
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 9.1e-34 147.1 95 73.7
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 9.1e-34 147.1 95 73.7
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 1.2e-33 146.7 96 75.0
AT2G34520 Arabidopsis thaliana HOM05D007099 ORTHO05D009081 1.6e-33 146.4 96 72.9
BcaB02g09535 Brassica carinata HOM05D007099 ORTHO05D009081 2.7e-33 145.6 96 74.0
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 2.7e-33 145.6 96 72.9
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 3.5e-33 145.2 100 70.0
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 5.9e-33 144.4 100 68.0
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 7.7e-33 144.1 100 70.0
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 7.7e-33 144.1 96 72.9
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 7.7e-33 144.1 96 72.9
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 7.7e-33 144.1 96 71.9
Aa31LG1G28210 Aethionema arabicum HOM05D007099 ORTHO05D009081 1.0e-32 143.7 96 70.8
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 1.0e-32 143.7 100 70.0
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 1.0e-32 143.7 96 74.0
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 1.0e-32 143.7 100 67.0
QL10p027581 Quercus lobata HOM05D007099 ORTHO05D009081 1.3e-32 143.3 100 66.0
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 2.9e-32 142.1 96 71.9
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 3.8e-32 141.7 99 69.7
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 5.0e-32 141.4 100 71.0
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 8.6e-32 140.6 95 72.6
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 8.6e-32 140.6 96 70.8
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 1.1e-31 140.2 96 69.8
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 1.5e-31 139.8 96 72.9
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 1.5e-31 139.8 96 70.8
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 1.5e-31 139.8 96 71.9
DCAR_014524 Daucus carota HOM05D007099 ORTHO05D009081 1.9e-31 139.4 96 72.9
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 2.5e-31 139.0 95 72.6
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 4.2e-31 138.3 95 71.6
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 5.5e-31 137.9 96 69.8
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 5.5e-31 137.9 95 71.6
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 5.5e-31 137.9 95 71.6
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 7.2e-31 137.5 99 67.7
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 9.5e-31 137.1 95 72.6
PSO541G4216 Papaver somniferum HOM05D007099 ORTHO05D009081 1.6e-30 136.3 97 71.1
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 2.8e-30 135.6 96 67.7
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 2.8e-30 135.6 95 70.5
PSO675G8234 Papaver somniferum HOM05D007099 ORTHO05D009081 3.6e-30 135.2 97 70.1
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 8.0e-30 134.0 86 74.4
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 1.4e-29 133.3 79 79.7
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 1.8e-29 132.9 96 69.8
BcaB02g09534 Brassica carinata HOM05D007099 ORTHO05D009081 6.8e-29 131.0 87 74.7
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 1.5e-28 129.8 94 68.1
PSO675G5170 Papaver somniferum HOM05D007099 ORTHO05D009081 1.5e-28 129.8 97 70.1
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 4.4e-28 128.3 94 67.0
FAN12G2091 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.2e-27 125.9 92 67.4
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 5.9e-25 117.9 96 61.5
FvH4_3g30490 Fragaria vesca HOM05D007099 ORTHO05D009081 2.5e-23 112.5 79 69.6
FAN11G0918 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.5e-23 112.5 79 69.6
Solyc00g500363.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 1.0e-21 107.1 96 55.2
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 2.3e-21 105.9 75 69.3
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 4.0e-21 105.1 62 77.4
Gohir.A01G126800 Gossypium hirsutum HOM05D007099 ORTHO05D009081 2.6e-20 102.4 66 72.7
ClCG01G010070 Citrullus lanatus HOM05D007099 ORTHO05D009081 9.8e-20 100.5 70 70.0
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 9.8e-20 100.5 94 55.3
Lalb_Chr11g0070131 Lupinus albus HOM05D007099 ORTHO05D009081 3.7e-19 98.6 62 74.2
Lalb_Chr11g0070211 Lupinus albus HOM05D007099 ORTHO05D009081 3.7e-19 98.6 62 74.2
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 8.3e-19 97.4 86 59.3
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 8.3e-19 97.4 67 68.7
arahy.Tifrunner.gnm1.ann1.HLYH4Q Arachis hypogaea HOM05D007099 ORTHO05D009081 1.6e-17 93.2 68 64.7
Rhsim10G0009600 Rhododendron simsii HOM05D000071 ORTHO05D000029 3.5e-17 92.0 66 65.2
Solyc09g050030.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 4.6e-17 91.7 62 66.1
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 7.8e-17 90.9 63 66.7
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 1.5e-15 86.7 61 65.6
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 4.7e-14 81.6 49 79.6
Cre17.g726300 Chlamydomonas reinhardtii HOM05D007099 ORTHO05D009081 1.8e-13 79.7 96 44.8
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 2.6e-12 75.9 51 70.6
Pp3c2_23460 Physcomitrium patens HOM05D007099 ORTHO05D009081 3.7e-11 72.0 56 57.1
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 5.4e-10 68.2 70 52.9
Peaxi162Scf44104g00001 Petunia axillaris HOM05D007099 ORTHO05D009081 7.0e-10 67.8 36 77.8
Nitab4.5_0000033g0070 Nicotiana tabacum HOM05D007099 ORTHO05D009081 4.6e-09 65.1 47 68.1
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 1.0e-08 63.9 93 40.9
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 1.0e-08 63.9 93 40.9
GSVIVG01018700001 Vitis vinifera HOM05D007099 ORTHO05D009081 1.0e-08 63.9 74 47.3
Lalb_Chr00c21g0405241 Lupinus albus HOM05D007099 ORTHO05D009081 1.9e-07 59.7 36 77.8
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 1.2e-06 57.0 94 41.5
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 1.2e-06 57.0 94 41.5
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 2.1e-06 56.2 94 40.4
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 2.8e-06 55.8 93 37.6
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 3.6e-06 55.5 94 40.4
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 3.6e-06 55.5 94 40.4
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 3.6e-06 55.5 94 40.4
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 3.6e-06 55.5 94 40.4
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 3.6e-06 55.5 94 40.4
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 3.6e-06 55.5 94 40.4
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 3.6e-06 55.5 94 40.4
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 3.6e-06 55.5 94 40.4
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 3.6e-06 55.5 94 40.4
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 3.6e-06 55.5 94 40.4
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.6e-06 55.5 93 37.6
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.6e-06 55.5 93 37.6
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.6e-06 55.5 93 37.6
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.6e-06 55.5 93 37.6
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 4.7e-06 55.1 93 37.6
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 6.2e-06 54.7 93 37.6
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 8.1e-06 54.3 93 38.7
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 8.1e-06 54.3 93 37.6
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 8.1e-06 54.3 93 35.5


User provided reference genes

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