Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.8e-161 572.4 271 100.0
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.4e-153 546.2 266 97.4
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 1.1e-124 450.3 269 79.2
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 1.8e-124 449.5 267 79.8
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 3.8e-114 415.2 269 75.5
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 4.9e-114 414.8 251 78.1
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 1.9e-113 412.9 263 75.3
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 5.1e-103 378.3 271 64.9
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 2.5e-102 375.9 267 64.4
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 8.2e-101 370.9 271 62.4
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 1.4e-97 360.1 272 62.1
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 4.2e-97 358.6 271 62.0
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 7.2e-97 357.8 267 61.8
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 1.2e-96 357.1 268 61.6
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 2.7e-96 355.9 273 60.8
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 7.9e-96 354.4 264 64.0
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 1.4e-95 353.6 293 59.4
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 3.3e-94 349.0 270 60.7
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 4.3e-94 348.6 275 61.1
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 7.4e-94 347.8 272 61.8
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 1.7e-93 346.7 276 59.4
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 2.8e-93 345.9 270 60.0
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 1.8e-92 343.2 272 59.6
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 3.1e-92 342.4 269 60.6
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 6.9e-92 341.3 270 67.0
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 9.1e-92 340.9 276 58.7
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 4.5e-91 338.6 270 59.3
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 7.7e-91 337.8 269 61.0
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 1.0e-90 337.4 271 60.5
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 1.3e-90 337.0 271 59.8
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 2.2e-90 336.3 270 59.6
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 5.0e-90 335.1 271 58.7
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 5.0e-90 335.1 270 58.5
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 6.5e-90 334.7 272 59.6
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 8.5e-90 334.3 271 60.9
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 8.5e-90 334.3 272 59.6
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 1.9e-89 333.2 271 59.0
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 2.5e-89 332.8 266 59.0
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 3.2e-89 332.4 274 58.8
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 1.2e-88 330.5 267 59.6
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 1.6e-88 330.1 274 58.4
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 2.7e-88 329.3 267 57.7
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.6e-88 328.9 265 58.9
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 3.6e-88 328.9 266 59.4
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 4.7e-88 328.6 273 58.6
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 4.7e-88 328.6 268 59.0
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 4.7e-88 328.6 271 58.7
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 7.9e-88 327.8 270 57.0
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 1.0e-87 327.4 270 57.8
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 1.4e-87 327.0 270 60.0
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 2.3e-87 326.2 266 59.4
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 3.0e-87 325.9 284 57.0
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 3.0e-87 325.9 267 59.2
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 2.0e-86 323.2 275 57.1
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 9.7e-86 320.9 257 61.1
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 9.7e-86 320.9 266 55.3
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 2.2e-85 319.7 274 57.3
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 3.7e-85 318.9 263 57.8
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 6.3e-85 318.2 240 61.2
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 8.2e-85 317.8 263 57.8
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 8.2e-85 317.8 263 57.8
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 1.8e-84 316.6 275 57.1
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 3.1e-84 315.8 271 55.4
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 5.3e-84 315.1 266 57.1
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 5.3e-84 315.1 257 58.0
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 7.0e-84 314.7 269 56.9
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 7.0e-84 314.7 269 56.9
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 9.1e-84 314.3 262 58.4
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 1.5e-83 313.5 265 56.2
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 1.5e-83 313.5 260 57.7
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 1.5e-83 313.5 260 57.7
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 2.0e-83 313.2 267 57.3
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 2.6e-83 312.8 272 55.5
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 2.6e-83 312.8 272 55.5
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 2.6e-83 312.8 269 55.8
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 4.5e-83 312.0 272 55.9
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 5.9e-83 311.6 272 55.9
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 7.7e-83 311.2 279 55.2
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.3e-82 310.5 272 54.8
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 1.7e-82 310.1 265 56.6
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 1.7e-82 310.1 260 57.3
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 3.8e-82 308.9 275 53.1
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 6.5e-82 308.1 270 56.7
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 2.7e-80 302.8 248 57.7
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 6.1e-80 301.6 241 58.1
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 1.8e-79 300.1 270 53.3
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 6.7e-79 298.1 304 49.7
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 4.4e-78 295.4 250 57.6
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 3.7e-77 292.4 271 51.3
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 2.4e-76 289.7 271 51.3
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 4.1e-76 288.9 269 50.2
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 1.2e-75 287.3 271 53.1
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 1.1e-73 280.8 273 52.7
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 1.1e-73 280.8 274 50.4
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 1.2e-72 277.3 255 54.1
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 6.1e-72 275.0 271 49.1
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 2.3e-71 273.1 223 58.7
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 2.3e-71 273.1 274 51.1
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 4.0e-71 272.3 240 56.2
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.5e-70 270.4 271 48.3
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 2.8e-69 266.2 217 56.7
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 5.9e-67 258.5 252 53.2
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 1.7e-66 256.9 264 47.0
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 4.7e-64 248.8 273 43.6
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 1.4e-63 247.3 269 44.6
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 8.8e-63 244.6 255 49.4
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 1.2e-62 244.2 337 39.5
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 7.5e-62 241.5 273 45.8
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 1.7e-61 240.4 299 40.5
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 2.0e-59 233.4 195 55.4
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 5.5e-57 225.3 277 42.2
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.6e-56 222.6 219 52.5
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.6e-56 222.6 219 52.5
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 8.9e-55 218.0 195 52.3
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.3e-53 214.2 219 49.8
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.4e-52 210.7 219 49.3
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.8e-50 202.6 217 46.5
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 6.8e-47 191.8 249 42.6
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 2.7e-43 179.9 199 45.2
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 6.6e-42 175.3 426 26.8
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.2e-40 171.0 123 64.2
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 8.0e-40 168.3 210 42.4
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 3.1e-39 166.4 288 32.6
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 4.4e-38 162.5 147 57.1
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 4.1e-36 156.0 304 30.3
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 7.8e-35 151.8 163 46.6
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.9e-34 149.4 103 69.9
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 4.3e-33 146.0 161 44.1
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 3.6e-32 142.9 383 27.2
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 1.1e-31 141.4 158 47.5
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 3.2e-28 129.8 100 61.0
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 1.6e-27 127.5 355 28.2
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 1.3e-26 124.4 147 49.0
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 6.2e-24 115.5 154 40.3
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 6.2e-24 115.5 59 83.1
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 9.9e-22 108.2 57 86.0
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 3.8e-21 106.3 154 35.7
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 5.4e-20 102.4 53 83.0
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 6.6e-18 95.5 140 42.1
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 3.3e-17 93.2 57 73.7
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 2.0e-14 84.0 168 33.9
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 3.0e-10 70.1 63 52.4
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 7.3e-09 65.5 40 67.5
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 2.1e-08 63.9 38 68.4
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 4.8e-08 62.8 29 93.1
MBI19_g24592_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 1.1e-07 61.6 38 63.2
CiPaw.05G218700 Carya illinoinensis HOM05D004971 ORTHO05D006289 1.2e-06 58.2 32 71.9


User provided reference genes

Program Settings