Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000065g0050 Nicotiana tabacum HOM05D004167 ORTHO05D005012 4.3e-29 130.6 62 100.0
BraA03t11449Z Brassica rapa HOM05D004167 ORTHO05D005012 4.4e-10 67.4 56 53.6
SalBow6G7174 Salvia bowleyana HOM05D004167 ORTHO05D005012 1.3e-09 65.9 37 78.4
SalBow3G2867 Salvia bowleyana HOM05D037314 ORTHO05D005012 1.7e-09 65.5 66 51.5
Carub.0004s2167 Capsella rubella HOM05D004167 ORTHO05D005012 2.2e-09 65.1 56 51.8
SalBow3G3756 Salvia bowleyana HOM05D004167 ORTHO05D005012 2.9e-09 64.7 62 53.2
BcaC01g05485 Brassica carinata HOM05D004167 ORTHO05D005012 3.7e-09 64.3 56 51.8
Dinv03048 Davidia involucrata HOM05D004167 ORTHO05D005012 3.7e-09 64.3 56 53.6
Manes.07G116100 Manihot esculenta HOM05D004167 ORTHO05D005012 3.7e-09 64.3 35 80.0
Oeu064381.1 Olea europaea HOM05D004167 ORTHO05D005012 3.7e-09 64.3 58 55.2
Oeu064382.1 Olea europaea HOM05D004167 ORTHO05D005012 3.7e-09 64.3 58 55.2
CAN.G1013.26 Capsicum annuum HOM05D004167 ORTHO05D005012 4.9e-09 63.9 35 77.1
Nitab4.5_0006489g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 6.4e-09 63.5 34 82.4
Nitab4.5_0010256g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 6.4e-09 63.5 34 82.4
Sabra08G0040300 Salix brachista HOM05D004167 ORTHO05D005012 6.4e-09 63.5 37 75.7
Peaxi162Scf00015g01117 Petunia axillaris HOM05D004167 ORTHO05D005012 8.3e-09 63.2 34 79.4
Solyc05g054460.3 Solanum lycopersicum HOM05D004167 ORTHO05D005012 8.3e-09 63.2 56 53.6
Sopen05g032950 Solanum pennellii HOM05D004167 ORTHO05D005012 8.3e-09 63.2 56 53.6
THA.LOC104824275 Tarenaya hassleriana HOM05D004167 ORTHO05D005012 8.3e-09 63.2 35 77.1
C03p26250 Brassica napus HOM05D004167 ORTHO05D005012 1.1e-08 62.8 49 59.2
Cpa.g.sc1.403 Carica papaya HOM05D004167 ORTHO05D005012 1.1e-08 62.8 35 77.1
Manes.10G030400 Manihot esculenta HOM05D004167 ORTHO05D005012 1.1e-08 62.8 35 77.1
Potri.008G055700 Populus trichocarpa HOM05D004167 ORTHO05D005012 1.1e-08 62.8 35 77.1
BolC4t22416H Brassica oleracea HOM05D004167 ORTHO05D005012 1.4e-08 62.4 35 77.1
Lalb_Chr10g0091651 Lupinus albus HOM05D004167 ORTHO05D005012 1.4e-08 62.4 35 77.1
Medtr7g026260 Medicago truncatula HOM05D004167 ORTHO05D005012 1.4e-08 62.4 45 64.4
SalBow8G3469 Salvia bowleyana HOM05D004167 ORTHO05D005012 1.4e-08 62.4 62 51.6
VMungo1383G2822 Vigna mungo HOM05D004167 ORTHO05D005012 1.4e-08 62.4 35 77.1
Actinidia13047 Actinidia chinensis HOM05D004167 ORTHO05D005012 1.9e-08 62.0 35 77.1
BolC3t15010H Brassica oleracea HOM05D004167 ORTHO05D005012 1.9e-08 62.0 35 74.3
CSS0037407 Camellia sinensis var. sinensis HOM05D004167 ORTHO05D005012 1.9e-08 62.0 56 55.4
Cfa001475 Carpinus fangiana HOM05D004167 ORTHO05D005012 1.9e-08 62.0 35 77.1
Rhsim09G0165800 Rhododendron simsii HOM05D004167 ORTHO05D005012 1.9e-08 62.0 35 77.1
TWI15G0568 Tripterygium wilfordii HOM05D004167 ORTHO05D005012 1.9e-08 62.0 35 80.0
arahy.Tifrunner.gnm1.ann1.A8V5RI Arachis hypogaea HOM05D004167 ORTHO05D005012 2.4e-08 61.6 35 71.4
arahy.Tifrunner.gnm1.ann1.TM884Y Arachis hypogaea HOM05D004167 ORTHO05D005012 2.4e-08 61.6 35 71.4
Lj1g0019937 Lotus japonicus HOM05D004167 ORTHO05D005012 2.4e-08 61.6 35 77.1
Phvul.008G010800 Phaseolus vulgaris HOM05D004167 ORTHO05D005012 2.4e-08 61.6 35 77.1
QL08p059807 Quercus lobata HOM05D004167 ORTHO05D005012 2.4e-08 61.6 35 74.3
AL4G37040 Arabidopsis lyrata HOM05D004167 ORTHO05D005012 3.2e-08 61.2 34 76.5
AT2G39630 Arabidopsis thaliana HOM05D004167 ORTHO05D005012 3.2e-08 61.2 34 76.5
BraA05t19647Z Brassica rapa HOM05D004167 ORTHO05D005012 3.2e-08 61.2 56 53.6
CiPaw.02G183800 Carya illinoinensis HOM05D004167 ORTHO05D005012 3.2e-08 61.2 34 79.4
Duzib106G0246 Durio zibethinus HOM05D004167 ORTHO05D005012 3.2e-08 61.2 35 74.3
ECA238G2661 Erigeron canadensis HOM05D004167 ORTHO05D005012 3.2e-08 61.2 56 55.4
Psat3g163360 Pisum sativum HOM05D004167 ORTHO05D005012 3.2e-08 61.2 35 71.4
Potri.010G204000 Populus trichocarpa HOM05D004167 ORTHO05D005012 3.2e-08 61.2 35 74.3
Ca_07311_v3 Cicer arietinum L. HOM05D004167 ORTHO05D005012 4.1e-08 60.8 35 71.4
Glyma.02G091700 Glycine max HOM05D004167 ORTHO05D005012 4.1e-08 60.8 35 74.3
Glyma.18G291100 Glycine max HOM05D004167 ORTHO05D005012 4.1e-08 60.8 35 74.3
HanXRQChr14g0457931 Helianthus annuus HOM05D004167 ORTHO05D005012 4.1e-08 60.8 35 80.0
Aa31LG5G20010 Aethionema arabicum HOM05D004167 ORTHO05D005012 5.4e-08 60.5 33 78.8
Thhalv10016901m.g Eutrema salsugineum HOM05D004167 ORTHO05D005012 5.4e-08 60.5 56 48.2
Lsat_1_v5_gn_2_119101 Lactuca sativa HOM05D004167 ORTHO05D005012 5.4e-08 60.5 35 77.1
Sabra10G0157600 Salix brachista HOM05D004167 ORTHO05D005012 5.4e-08 60.5 35 74.3
TAR627G1156 Trochodendron aralioides HOM05D004167 ORTHO05D005012 5.4e-08 60.5 35 77.1
Ciclev10032053m.g Citrus clementina HOM05D004167 ORTHO05D005012 7.1e-08 60.1 35 74.3
Nn2g10367 Nelumbo nucifera HOM05D004167 ORTHO05D005012 7.1e-08 60.1 35 77.1
Hund13759 Selenicereus undatus HOM05D004167 ORTHO05D005012 7.1e-08 60.1 34 76.5
Hund16089 Selenicereus undatus HOM05D004167 ORTHO05D005012 7.1e-08 60.1 34 79.4
PGSC0003DMG400023531 Solanum tuberosum HOM05D004167 ORTHO05D005012 7.1e-08 60.1 56 53.6
TPR.G1356 Trifolium pratense HOM05D004167 ORTHO05D005012 7.1e-08 60.1 35 71.4
GSVIVG01016551001 Vitis vinifera HOM05D004167 ORTHO05D005012 7.1e-08 60.1 35 77.1
MSTRG.303 Avicennia marina HOM05D004167 ORTHO05D005012 9.2e-08 59.7 34 79.4
A05p06810 Brassica napus HOM05D004167 ORTHO05D005012 9.2e-08 59.7 57 49.1
Duzib114G0485 Durio zibethinus HOM05D004167 ORTHO05D005012 9.2e-08 59.7 35 71.4
MD07G1198100 Malus domestica HOM05D004167 ORTHO05D005012 9.2e-08 59.7 35 77.1
TAR633G1670 Trochodendron aralioides HOM05D004167 ORTHO05D005012 9.2e-08 59.7 35 77.1
SalBow5G0433 Salvia bowleyana HOM05D004167 ORTHO05D005012 1.2e-07 59.3 34 76.5
SGA_v2.0_scaffold108G31010 Striga asiatica HOM05D004167 ORTHO05D005012 1.2e-07 59.3 34 79.4
TAR623G0075 Trochodendron aralioides HOM05D004167 ORTHO05D005012 1.2e-07 59.3 35 74.3
CANSAT56G0736 Cannabis sativa HOM05D004167 ORTHO05D005012 1.6e-07 58.9 34 73.5
Sp4g21890 Schrenkiella parvula HOM05D004167 ORTHO05D005012 1.6e-07 58.9 56 48.2
EL10Ac2g04752 Beta vulgaris HOM05D004167 ORTHO05D005012 2.1e-07 58.5 34 73.5
CiPaw.01G287300 Carya illinoinensis HOM05D004167 ORTHO05D005012 2.1e-07 58.5 35 74.3
Cc02_g07870 Coffea canephora HOM05D004167 ORTHO05D005012 2.1e-07 58.5 35 77.1
Dinv26013 Davidia involucrata HOM05D004167 ORTHO05D005012 2.1e-07 58.5 56 50.0
Eucgr.G02933 Eucalyptus grandis HOM05D004167 ORTHO05D005012 2.1e-07 58.5 61 49.2
CARHR134480 Cardamine hirsuta HOM05D004167 ORTHO05D005012 2.7e-07 58.2 35 71.4
AUR62012082 Chenopodium quinoa HOM05D004167 ORTHO05D005012 2.7e-07 58.2 35 71.4
AUR62039381 Chenopodium quinoa HOM05D004167 ORTHO05D005012 2.7e-07 58.2 35 71.4
ECA232G2013 Erigeron canadensis HOM05D004167 ORTHO05D005012 2.7e-07 58.2 35 74.3
Sed0027549 Sechium edule HOM05D004167 ORTHO05D005012 2.7e-07 58.2 35 74.3
CsaV3_5G008030 Cucumis sativus L. HOM05D004167 ORTHO05D005012 3.5e-07 57.8 56 51.8
DCAR_011694 Daucus carota HOM05D004167 ORTHO05D005012 3.5e-07 57.8 56 50.0
Gohir.D05G301300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 3.5e-07 57.8 35 71.4
Gorai.009G319400 Gossypium raimondii HOM05D004167 ORTHO05D005012 3.5e-07 57.8 35 71.4
MELO3C023850.2 Cucumis melo HOM05D004167 ORTHO05D005012 4.6e-07 57.4 35 74.3
Lsat_1_v5_gn_9_65421 Lactuca sativa HOM05D004167 ORTHO05D005012 4.6e-07 57.4 56 51.8
Thecc.10G042500 Theobroma cacao HOM05D004167 ORTHO05D005012 4.6e-07 57.4 35 71.4
Zm00001eb062720 Zea mays HOM05D004167 ORTHO05D005012 4.6e-07 57.4 35 74.3
Atru.chr12.453 Acer truncatum HOM05D004167 ORTHO05D005012 6.0e-07 57.0 35 74.3
Atru.chr12.475 Acer truncatum HOM05D004167 ORTHO05D005012 6.0e-07 57.0 35 74.3
Migut.F01510 Erythranthe guttata HOM05D004167 ORTHO05D005012 6.0e-07 57.0 34 76.5
FvH4_7g22450 Fragaria vesca HOM05D004167 ORTHO05D005012 6.0e-07 57.0 35 71.4
FAN01G0242 Fragaria x ananassa HOM05D004167 ORTHO05D005012 6.0e-07 57.0 35 71.4
FAN01G1831 Fragaria x ananassa HOM05D004167 ORTHO05D005012 6.0e-07 57.0 35 71.4
FAN03G2888 Fragaria x ananassa HOM05D004167 ORTHO05D005012 6.0e-07 57.0 35 71.4
FAN06G2439 Fragaria x ananassa HOM05D004167 ORTHO05D005012 6.0e-07 57.0 35 71.4
FAN06G3201 Fragaria x ananassa HOM05D004167 ORTHO05D005012 6.0e-07 57.0 35 71.4
FAN10G4113 Fragaria x ananassa HOM05D004167 ORTHO05D005012 6.0e-07 57.0 35 71.4
PGR142G3800 Punica granatum HOM05D004167 ORTHO05D005012 6.0e-07 57.0 35 68.6
Gohir.D10G228300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 7.8e-07 56.6 35 68.6
Gorai.011G260700 Gossypium raimondii HOM05D004167 ORTHO05D005012 7.8e-07 56.6 35 68.6
Sc11g0007950 Simmondsia chinensis HOM05D004167 ORTHO05D005012 7.8e-07 56.6 33 75.8
Ah.16g102290 Amaranthus hybridus HOM05D004167 ORTHO05D005012 1.0e-06 56.2 34 73.5
ClCG07G003290 Citrullus lanatus HOM05D004167 ORTHO05D005012 1.0e-06 56.2 35 71.4
ClCG09G019760 Citrullus lanatus HOM05D004167 ORTHO05D005012 1.0e-06 56.2 38 68.4
Gohir.A10G218700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 1.0e-06 56.2 35 68.6
MD01G1133900 Malus domestica HOM05D004167 ORTHO05D005012 1.0e-06 56.2 35 71.4
Nn5g26919 Nelumbo nucifera HOM05D004167 ORTHO05D005012 1.0e-06 56.2 35 74.3
TAR381G1570 Trochodendron aralioides HOM05D004167 ORTHO05D005012 1.0e-06 56.2 35 68.6
RcHm_v2.0_Chr1g0367061 Rosa chinensis HOM05D004167 ORTHO05D005012 1.3e-06 55.8 35 68.6
SEGI_18748 Sequoiadendron giganteum HOM05D004167 ORTHO05D005012 1.3e-06 55.8 35 68.6
PSO210G2827 Papaver somniferum HOM05D004167 ORTHO05D005012 1.7e-06 55.5 35 71.4
PSO210G3999 Papaver somniferum HOM05D004167 ORTHO05D005012 1.7e-06 55.5 35 71.4
Prupe.2G235200 Prunus persica HOM05D004167 ORTHO05D005012 1.7e-06 55.5 35 74.3
Aqoxy5G03379 Aquilegia oxysepala HOM05D004167 ORTHO05D005012 2.3e-06 55.1 34 73.5
Os03g0821800 Oryza sativa ssp. japonica HOM05D004167 ORTHO05D005012 3.0e-06 54.7 35 71.4
BcaC02g12089 Brassica carinata HOM05D004167 ORTHO05D005012 3.9e-06 54.3 34 70.6
C04p07990 Brassica napus HOM05D004167 ORTHO05D005012 3.9e-06 54.3 34 70.6
Sed0025003 Sechium edule HOM05D004167 ORTHO05D005012 5.1e-06 53.9 35 68.6
Gohir.A05G301600 Gossypium hirsutum HOM05D004167 ORTHO05D005012 6.6e-06 53.5 35 68.6
ATR0559G365 Amborella trichopoda HOM05D004167 ORTHO05D005012 8.6e-06 53.1 35 65.7
CsaV3_5G026660 Cucumis sativus L. HOM05D004167 ORTHO05D005012 8.6e-06 53.1 35 68.6


User provided reference genes

Program Settings