Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000061g0180 Nicotiana tabacum HOM05D005287 ORTHO05D006893 2.2e-40 171.4 89 100.0
PGSC0003DMG401006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 8.5e-29 132.9 88 80.7
PGSC0003DMG402006177 Solanum tuberosum HOM05D005287 ORTHO05D006893 8.5e-29 132.9 88 80.7
Sopen01g053530 Solanum pennellii HOM05D005287 ORTHO05D006893 1.9e-28 131.7 88 79.5
CAN.G588.65 Capsicum annuum HOM05D005287 ORTHO05D006893 1.0e-26 125.9 89 77.5
Peaxi162Scf00016g01355 Petunia axillaris HOM05D005287 ORTHO05D006893 8.8e-26 122.9 81 80.2
Solyc01g111470.4 Solanum lycopersicum HOM05D005287 ORTHO05D006893 3.1e-23 114.4 68 76.5
PGSC0003DMG400004236 Solanum tuberosum HOM05D005287 ORTHO05D006893 3.1e-23 114.4 68 75.0
Cc09_g02740 Coffea canephora HOM05D005287 ORTHO05D006893 1.3e-21 109.0 67 76.1
CSS0048123 Camellia sinensis var. sinensis HOM05D005287 ORTHO05D006893 3.3e-20 104.4 67 73.1
Dinv11806 Davidia involucrata HOM05D005287 ORTHO05D006893 4.0e-18 97.4 85 62.4
TAR628G1500 Trochodendron aralioides HOM05D005287 ORTHO05D006893 1.5e-17 95.5 67 64.2
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 2.0e-17 95.1 69 63.8
EL10Ac2g03556 Beta vulgaris HOM05D005287 ORTHO05D006893 2.6e-17 94.7 67 61.2
CiPaw.01G276400 Carya illinoinensis HOM05D005287 ORTHO05D006893 2.6e-17 94.7 67 64.2
Sc06g0001790 Simmondsia chinensis HOM05D005287 ORTHO05D006893 2.6e-17 94.7 67 62.7
TAR376G0736 Trochodendron aralioides HOM05D005287 ORTHO05D006893 3.4e-17 94.4 67 65.7
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 4.4e-17 94.0 67 59.7
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 9.8e-17 92.8 67 61.2
Cfa001595 Carpinus fangiana HOM05D005287 ORTHO05D006893 9.8e-17 92.8 67 62.7
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 2.2e-16 91.7 69 63.8
Cfa001592 Carpinus fangiana HOM05D005287 ORTHO05D006893 2.9e-16 91.3 67 61.2
Ah.16g108250 Amaranthus hybridus HOM05D005287 ORTHO05D006893 3.7e-16 90.9 67 61.2
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 4.9e-16 90.5 86 57.0
Haze_16934 Corylus avellana HOM05D005287 ORTHO05D006893 4.9e-16 90.5 67 61.2
Lalb_Chr06g0171161 Lupinus albus HOM05D005287 ORTHO05D006893 4.9e-16 90.5 67 64.2
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 6.3e-16 90.1 67 62.7
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 8.3e-16 89.7 68 66.2
HanXRQChr09g0246581 Helianthus annuus HOM05D005287 ORTHO05D006893 1.4e-15 89.0 69 58.0
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 1.8e-15 88.6 85 55.3
Actinidia03030 Actinidia chinensis HOM05D005287 ORTHO05D006893 2.4e-15 88.2 85 50.6
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 2.4e-15 88.2 67 59.7
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 2.4e-15 88.2 67 62.7
Actinidia38253 Actinidia chinensis HOM05D005287 ORTHO05D006893 3.2e-15 87.8 85 49.4
Aqoxy5G00866 Aquilegia oxysepala HOM05D005287 ORTHO05D006893 3.2e-15 87.8 67 62.7
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 3.2e-15 87.8 67 62.7
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 7.0e-15 86.7 67 58.2
CsaV3_5G006270 Cucumis sativus L. HOM05D005287 ORTHO05D006893 1.6e-14 85.5 67 61.2
Ciclev10033834m.g Citrus clementina HOM05D005287 ORTHO05D006893 2.0e-14 85.1 66 59.1
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 2.7e-14 84.7 67 61.2
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 3.5e-14 84.3 67 61.2
Glyma.10G213600 Glycine max HOM05D005287 ORTHO05D006893 3.5e-14 84.3 67 61.2
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 3.5e-14 84.3 67 61.2
Psat6g186200 Pisum sativum HOM05D005287 ORTHO05D006893 3.5e-14 84.3 67 61.2
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 3.5e-14 84.3 67 59.7
Lsat_1_v5_gn_9_67461 Lactuca sativa HOM05D005287 ORTHO05D006893 7.8e-14 83.2 67 56.7
COL.COLO4_23731 Corchorus olitorius HOM05D005287 ORTHO05D006893 1.0e-13 82.8 67 59.7
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 1.7e-13 82.0 68 60.3
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 2.3e-13 81.6 67 61.2
Gohir.A04G096900 Gossypium hirsutum HOM05D005287 ORTHO05D006893 2.9e-13 81.3 67 56.7
Gohir.D04G136700 Gossypium hirsutum HOM05D005287 ORTHO05D006893 2.9e-13 81.3 67 56.7
Gorai.012G120500 Gossypium raimondii HOM05D005287 ORTHO05D006893 2.9e-13 81.3 67 56.7
SalBow6G0018 Salvia bowleyana HOM05D005287 ORTHO05D006893 2.9e-13 81.3 76 53.9
Atru.chr12.633 Acer truncatum HOM05D005287 ORTHO05D006893 3.9e-13 80.9 81 53.1
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 5.0e-13 80.5 69 52.2
RcHm_v2.0_Chr1g0364091 Rosa chinensis HOM05D005287 ORTHO05D006893 5.0e-13 80.5 67 56.7
Thecc.10G068400 Theobroma cacao HOM05D005287 ORTHO05D006893 6.6e-13 80.1 67 58.2
Medtr1g095880 Medicago truncatula HOM05D005287 ORTHO05D006893 8.6e-13 79.7 59 64.4
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 8.6e-13 79.7 69 53.6
Sabra10G0168300 Salix brachista HOM05D005287 ORTHO05D006893 1.1e-12 79.3 85 50.6
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 2.5e-12 78.2 69 52.2
Duzib114G0447 Durio zibethinus HOM05D005287 ORTHO05D006893 3.3e-12 77.8 67 56.7
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 4.3e-12 77.4 69 50.7
arahy.Tifrunner.gnm1.ann1.NBNI0E Arachis hypogaea HOM05D005287 ORTHO05D006893 4.3e-12 77.4 69 58.0
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 4.3e-12 77.4 79 49.4
Lj1E922T3 Lonicera japonica HOM05D005287 ORTHO05D006893 4.3e-12 77.4 88 45.5
Potri.010G217600 Populus trichocarpa HOM05D005287 ORTHO05D006893 4.3e-12 77.4 85 49.4
PSO566G0007 Papaver somniferum HOM05D005287 ORTHO05D006893 9.5e-12 76.3 67 50.7
arahy.Tifrunner.gnm1.ann1.JQA4UT Arachis hypogaea HOM05D005287 ORTHO05D006893 1.2e-11 75.9 69 58.0
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 1.6e-11 75.5 69 53.6
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 1.6e-11 75.5 69 52.2
MBI16_g17961_MAGBIO Magnolia biondii HOM05D005287 ORTHO05D006893 2.1e-11 75.1 67 56.7
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 2.8e-11 74.7 69 49.3
FAN03G3353 Fragaria x ananassa HOM05D005287 ORTHO05D006893 2.8e-11 74.7 67 52.2
TWI15G0219 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 2.8e-11 74.7 52 67.3
arahy.Tifrunner.gnm1.ann1.VE562J Arachis hypogaea HOM05D005287 ORTHO05D006893 3.6e-11 74.3 69 55.1
arahy.Tifrunner.gnm1.ann1.IRN669 Arachis hypogaea HOM05D005287 ORTHO05D006893 4.7e-11 73.9 69 56.5
FvH4_7g20132 Fragaria vesca HOM05D005287 ORTHO05D006893 4.7e-11 73.9 67 52.2
FAN06G3074 Fragaria x ananassa HOM05D005287 ORTHO05D006893 4.7e-11 73.9 67 52.2
FAN10G3161 Fragaria x ananassa HOM05D005287 ORTHO05D006893 4.7e-11 73.9 67 52.2
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 6.1e-11 73.6 69 52.2
AUR62020786 Chenopodium quinoa HOM05D005287 ORTHO05D006893 8.0e-11 73.2 52 61.5
DCAR_001539 Daucus carota HOM05D005287 ORTHO05D006893 8.0e-11 73.2 65 50.8
FAN01G0321 Fragaria x ananassa HOM05D005287 ORTHO05D006893 8.0e-11 73.2 67 52.2
THA.LOC104805786 Tarenaya hassleriana HOM05D005287 ORTHO05D006893 8.0e-11 73.2 77 45.5
arahy.Tifrunner.gnm1.ann1.W4HSG5 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.0e-10 72.8 69 55.1
arahy.Tifrunner.gnm1.ann1.VJ1NN4 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.8e-10 72.0 69 55.1
CDE01G0711 Ceratophyllum demersum HOM05D005287 ORTHO05D006893 2.3e-10 71.6 64 51.6
PSO782G5729 Papaver somniferum HOM05D005287 ORTHO05D006893 2.3e-10 71.6 85 43.5
arahy.Tifrunner.gnm1.ann1.K64M7Y Arachis hypogaea HOM05D005287 ORTHO05D006893 3.1e-10 71.2 69 55.1
AUR62027913 Chenopodium quinoa HOM05D005287 ORTHO05D006893 3.1e-10 71.2 52 59.6
AUR62043641 Chenopodium quinoa HOM05D005287 ORTHO05D006893 3.1e-10 71.2 52 59.6
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 4.0e-10 70.9 69 49.3
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 4.0e-10 70.9 69 49.3
VMungo0720G1141 Vigna mungo HOM05D005287 ORTHO05D006893 4.0e-10 70.9 65 53.8
arahy.Tifrunner.gnm1.ann1.TR9913 Arachis hypogaea HOM05D005287 ORTHO05D006893 8.9e-10 69.7 69 53.6
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 1.2e-09 69.3 67 50.7
Ca_10593_v3 Cicer arietinum L. HOM05D005287 ORTHO05D006893 2.0e-09 68.6 69 46.4
Phvul.007G091900 Phaseolus vulgaris HOM05D005287 ORTHO05D006893 2.0e-09 68.6 67 49.3
arahy.Tifrunner.gnm1.ann1.C25YBK Arachis hypogaea HOM05D005287 ORTHO05D006893 1.3e-08 65.9 74 39.2
arahy.Tifrunner.gnm1.ann1.SZH9K7 Arachis hypogaea HOM05D005287 ORTHO05D006893 1.3e-08 65.9 74 39.2
arahy.Tifrunner.gnm1.ann1.J60LCZ Arachis hypogaea HOM05D005287 ORTHO05D006893 1.7e-08 65.5 67 43.3
arahy.Tifrunner.gnm1.ann1.V5M9Y5 Arachis hypogaea HOM05D005287 ORTHO05D006893 6.4e-08 63.5 67 43.3
arahy.Tifrunner.gnm1.ann1.4R3XMY Arachis hypogaea HOM05D005287 ORTHO05D006893 1.4e-07 62.4 67 41.8
ECA232G3557 Erigeron canadensis HOM05D005287 ORTHO05D006893 1.9e-07 62.0 54 50.0
BcaC06g36186 Brassica carinata HOM05D005287 ORTHO05D006893 9.2e-07 59.7 69 43.5
C07p06750 Brassica napus HOM05D005287 ORTHO05D006893 9.2e-07 59.7 69 43.5
BolC7t41098H Brassica oleracea HOM05D005287 ORTHO05D006893 9.2e-07 59.7 69 43.5
TWI63G1618 Tripterygium wilfordii HOM05D005287 ORTHO05D006893 9.2e-07 59.7 66 43.9
HPP92_023661 Vanilla planifolia HOM05D005287 ORTHO05D006893 1.6e-06 58.9 67 49.3


User provided reference genes

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