Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.2e-151 538.9 264 100.0
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 9.0e-129 463.8 264 88.3
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 1.4e-108 396.7 272 76.8
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 3.9e-108 395.2 272 76.5
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 3.1e-105 385.6 258 79.1
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.6e-88 330.1 196 78.1
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 2.0e-80 303.1 202 70.8
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 2.7e-80 302.8 182 75.8
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 4.5e-80 302.0 195 72.8
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 5.9e-80 301.6 188 73.4
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 5.9e-80 301.6 182 75.8
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 7.7e-80 301.2 184 75.0
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 1.7e-79 300.1 173 79.2
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 8.6e-79 297.7 210 68.1
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.1e-78 297.4 182 74.7
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 4.3e-78 295.4 208 65.4
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 9.5e-78 294.3 180 73.9
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.6e-77 293.5 183 72.1
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 2.1e-77 293.1 180 75.0
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 2.8e-77 292.7 180 75.0
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 6.1e-77 291.6 181 75.1
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 1.4e-76 290.4 186 72.6
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 2.3e-76 289.7 181 74.0
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 2.3e-76 289.7 183 72.7
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 5.2e-76 288.5 220 65.5
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 8.9e-76 287.7 184 72.8
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 1.3e-74 283.9 189 68.8
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 1.7e-74 283.5 183 72.7
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 2.2e-74 283.1 182 74.2
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 2.2e-74 283.1 182 71.4
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 2.2e-74 283.1 186 71.5
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 3.7e-74 282.3 183 70.5
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 3.7e-74 282.3 182 70.3
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 3.7e-74 282.3 178 74.2
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 8.3e-74 281.2 184 71.7
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.4e-73 280.4 182 70.9
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 1.4e-73 280.4 181 71.8
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 1.4e-73 280.4 183 71.6
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 2.4e-73 279.6 180 72.2
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 5.4e-73 278.5 216 59.7
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 5.4e-73 278.5 185 71.4
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 1.2e-72 277.3 181 71.3
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 2.7e-72 276.2 185 70.8
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 3.5e-72 275.8 185 69.7
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.0e-71 274.2 182 72.5
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 1.0e-71 274.2 182 72.0
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 1.0e-71 274.2 182 72.0
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 1.3e-71 273.9 182 69.8
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.3e-71 273.9 182 69.8
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 1.3e-71 273.9 170 72.9
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 1.7e-71 273.5 184 68.5
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 1.7e-71 273.5 184 67.4
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 3.0e-71 272.7 184 69.6
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 6.6e-71 271.6 184 70.7
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 8.6e-71 271.2 183 67.2
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 4.3e-70 268.9 184 68.5
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 5.6e-70 268.5 185 70.3
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 7.3e-70 268.1 165 77.0
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 7.3e-70 268.1 181 70.2
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 7.3e-70 268.1 183 70.5
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 7.3e-70 268.1 185 69.7
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 9.5e-70 267.7 184 67.4
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 1.6e-69 266.9 186 70.4
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.1e-69 266.5 182 68.1
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.8e-69 266.2 182 68.1
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 6.2e-69 265.0 180 68.3
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 8.0e-69 264.6 186 68.3
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 1.4e-68 263.8 178 70.8
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 1.8e-68 263.5 186 67.7
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 2.3e-68 263.1 253 53.4
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 5.2e-68 261.9 185 66.5
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 6.8e-68 261.5 160 74.4
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 8.9e-68 261.2 185 67.0
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 8.9e-68 261.2 185 67.0
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.5e-67 260.4 176 69.3
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.6e-67 259.6 201 62.2
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 7.5e-67 258.1 193 64.8
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 9.8e-67 257.7 193 63.2
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.7e-66 256.9 186 66.1
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.7e-66 256.9 186 66.1
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 2.2e-66 256.5 179 67.0
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 2.2e-66 256.5 168 72.0
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 1.1e-65 254.2 184 66.8
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 3.2e-65 252.7 185 65.9
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 5.4e-65 251.9 175 67.4
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 1.2e-64 250.8 199 61.3
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.7e-64 249.6 197 60.9
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 7.8e-64 248.1 182 64.3
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 7.8e-64 248.1 176 60.8
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 1.0e-63 247.7 210 56.7
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 5.0e-63 245.4 181 64.6
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 5.0e-63 245.4 182 65.4
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 1.5e-62 243.8 206 58.7
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 1.5e-62 243.8 181 66.3
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 5.6e-62 241.9 198 58.1
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 5.6e-62 241.9 175 67.4
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 1.2e-61 240.7 182 62.1
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 3.6e-61 239.2 215 55.3
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 5.2e-60 235.3 166 68.7
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 6.8e-60 235.0 188 59.6
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 1.1e-57 227.6 189 57.1
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 7.1e-57 224.9 198 54.0
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.6e-56 223.8 150 68.7
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 6.0e-56 221.9 167 67.1
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 7.8e-56 221.5 183 62.3
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 7.8e-56 221.5 183 59.0
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 6.6e-55 218.4 137 74.5
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 1.1e-54 217.6 162 63.6
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 5.6e-54 215.3 198 54.0
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 6.8e-52 208.4 183 53.6
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 4.9e-50 202.2 163 63.2
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 4.9e-50 202.2 133 69.9
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.2e-49 199.5 168 55.4
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 4.1e-49 199.1 133 69.2
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 5.4e-49 198.7 112 77.7
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.1e-49 198.4 166 55.4
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.5e-48 196.1 168 55.4
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 6.0e-48 195.3 133 64.7
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.0e-47 194.5 195 49.7
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 9.6e-46 188.0 152 58.6
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.6e-45 186.0 163 53.4
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.1e-41 171.8 136 57.4
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.1e-38 164.5 122 63.1
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.3e-38 161.8 125 60.0
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 9.6e-38 161.4 187 46.5
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 2.1e-37 160.2 183 48.1
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.8e-36 157.1 168 47.6
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 6.9e-36 155.2 182 45.6
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.5e-35 154.1 114 61.4
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 4.9e-34 149.1 192 41.7
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 1.1e-33 147.9 104 65.4
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 8.7e-31 138.3 117 61.5
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 4.5e-27 125.9 85 65.9
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 2.4e-25 120.2 201 35.3
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.5e-22 110.9 89 55.1
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 1.9e-14 84.0 55 78.2
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.4e-12 77.8 65 58.5
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 9.0e-12 75.1 49 73.5
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 3.4e-11 73.2 108 39.8
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 7.6e-11 72.0 47 72.3
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.3e-10 71.2 53 60.4
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 3.8e-10 69.7 47 68.1
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 6.1e-08 62.4 50 62.0


User provided reference genes

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