Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1945.2 978 100.0
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1837.8 1005 93.4
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1771.5 986 91.3
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1711.0 984 89.3
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1708.7 984 89.5
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1703.0 984 88.8
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1620.9 988 83.7
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1618.6 990 83.5
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1609.7 981 83.6
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1607.8 990 82.7
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1602.8 994 82.0
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1602.8 980 82.9
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1601.6 984 82.9
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1600.1 981 82.5
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1596.6 990 82.2
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1590.1 983 82.1
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1588.9 901 87.8
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1588.5 992 81.4
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1588.2 854 93.3
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1587.0 991 81.6
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1584.7 986 81.6
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1581.6 976 82.4
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1576.6 989 81.6
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1576.2 978 82.2
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1571.6 948 83.8
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1571.2 921 85.7
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1570.1 901 86.3
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1566.6 887 87.5
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1566.2 993 81.2
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1564.3 999 79.8
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1562.0 887 87.9
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1561.2 996 79.7
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1559.7 914 85.2
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1558.5 900 86.7
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1557.0 982 80.0
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1553.5 906 85.2
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1551.6 979 80.7
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1550.0 981 80.7
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1548.9 985 80.2
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1547.7 992 79.5
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1545.4 902 85.6
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1542.7 886 86.7
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1542.3 900 85.8
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1541.6 994 80.2
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1540.4 916 84.1
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1539.2 901 84.0
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1538.5 985 79.4
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1537.7 903 84.8
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1535.4 926 83.5
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1535.0 901 85.2
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1533.9 901 84.9
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1532.7 982 78.7
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1531.5 900 84.3
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1531.2 985 79.1
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1531.2 991 79.1
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1530.8 995 78.6
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1530.8 995 78.6
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1526.1 995 78.5
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1526.1 985 79.2
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1525.8 886 85.6
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1525.0 886 85.7
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1521.9 908 83.6
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1521.5 994 78.0
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1516.5 905 82.9
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1513.0 888 84.1
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1512.3 1015 77.1
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1512.3 886 84.9
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1511.1 902 83.7
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1509.6 885 85.1
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1509.6 925 82.5
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1508.8 885 84.4
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1508.4 869 86.3
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1508.0 944 81.4
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1500.7 887 83.1
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1500.7 902 82.9
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1500.3 892 83.5
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1498.4 901 82.5
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1498.0 901 82.8
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1496.9 906 81.9
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1496.9 906 81.9
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1496.5 906 81.8
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1496.1 870 84.9
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1495.3 856 86.9
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1493.8 904 82.4
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1492.2 892 84.3
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1489.9 869 85.7
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1487.6 925 79.9
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1487.2 986 76.3
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1486.5 913 81.2
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1485.7 987 76.4
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1483.8 898 81.2
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1483.4 902 81.4
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1482.6 966 78.7
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1482.6 870 84.3
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1481.8 925 79.8
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1481.1 982 76.6
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1480.7 905 82.0
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1479.2 892 81.7
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1477.6 984 77.9
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1475.3 885 82.4
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1471.8 865 85.3
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1467.6 966 76.3
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1461.4 885 81.6
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1461.4 1102 71.4
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1456.8 887 81.4
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1443.3 914 79.6
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1442.9 870 82.1
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1429.5 964 76.3
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1426.8 856 81.3
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1425.6 978 75.4
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1423.7 889 81.8
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1414.1 866 80.6
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1412.5 894 77.7
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1410.6 893 77.5
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1405.6 894 79.9
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1400.6 890 77.8
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1392.9 786 87.7
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1389.8 882 77.0
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1372.1 886 78.6
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1365.1 894 77.7
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1364.7 815 82.5
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1360.9 835 80.0
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1360.5 814 83.8
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1350.1 914 75.6
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1322.0 895 77.3
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1316.6 893 77.2
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1298.5 874 76.1
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1280.4 743 84.9
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1239.2 742 82.1
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1231.9 791 77.7
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1215.7 882 71.4
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1191.4 869 68.5
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1190.3 901 66.4
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1100.1 645 83.6
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 2.6e-306 1055.4 593 87.5
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 3.3e-301 1038.5 895 59.0
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 3.3e-277 958.7 641 76.1
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 1.4e-259 900.2 920 54.0
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.3e-220 770.8 550 74.2
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.1e-219 767.7 520 77.3
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 8.6e-217 758.1 504 76.6
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 4.1e-195 686.0 403 85.1
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.3e-192 675.2 462 74.2
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 7.3e-184 648.7 755 49.1
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 5.3e-166 589.3 480 65.6
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 7.6e-157 558.9 350 79.7
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 1.1e-139 501.9 403 64.5
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 7.2e-139 499.2 296 82.8
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.4e-112 410.6 435 52.9
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 2.6e-104 384.4 330 61.5
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 6.4e-95 353.2 232 77.2
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 6.0e-85 320.1 272 62.9
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 9.6e-67 259.6 227 63.0
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 1.2e-61 242.7 216 59.7
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 1.1e-59 236.1 151 78.8
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 2.0e-48 198.7 119 79.8
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 6.5e-39 167.2 280 40.4
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.3e-36 158.7 114 69.3
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 3.8e-31 141.4 81 86.4
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 1.1e-30 139.8 85 81.2
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 4.2e-30 137.9 83 81.9
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 2.3e-28 132.1 91 69.2
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 2.6e-24 118.6 130 54.6
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 1.3e-23 116.3 464 26.5
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 1.7e-23 115.9 95 64.2
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 2.2e-18 99.0 63 68.3
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 1.6e-16 92.8 60 70.0
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 6.1e-13 80.9 60 70.0
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 2.0e-11 75.9 51 72.5
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 2.6e-11 75.5 49 75.5
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 1.8e-09 69.3 43 74.4
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 3.1e-09 68.6 101 43.6
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 7.0e-09 67.4 46 69.6
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.0e-08 65.9 43 69.8
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 4.5e-08 64.7 56 62.5


User provided reference genes

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