Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 6.5e-240 834.3 673 100.0
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 3.1e-218 762.3 661 95.3
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 1.9e-186 656.8 673 78.9
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 2.1e-182 643.3 655 86.0
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 1.3e-171 607.4 637 75.8
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 2.1e-169 600.1 673 82.8
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 4.2e-162 575.9 599 81.0
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 1.9e-135 487.3 559 85.7
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 2.2e-110 404.1 515 51.8
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 1.9e-106 391.0 665 66.0
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 1.2e-100 371.7 675 63.4
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 5.9e-92 342.8 610 53.1
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 4.2e-90 336.7 575 54.4
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 1.8e-88 331.3 602 66.6
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 2.0e-87 327.8 554 69.7
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 4.1e-85 320.1 610 63.8
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 4.1e-85 320.1 392 72.7
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 3.8e-83 313.5 645 60.6
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 5.0e-83 313.2 393 65.9
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 8.0e-81 305.8 393 70.5
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 4.4e-79 300.1 607 50.4
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 2.4e-77 294.3 393 68.4
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 3.5e-76 290.4 609 60.1
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 1.0e-75 288.9 386 66.6
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 6.6e-75 286.2 391 70.6
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 5.6e-74 283.1 390 59.5
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 8.0e-73 279.3 607 61.8
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 5.2e-72 276.6 391 66.0
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 1.5e-71 275.0 391 65.5
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 2.0e-71 274.6 392 68.1
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 5.8e-71 273.1 391 67.8
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 6.4e-70 269.6 605 50.7
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 1.1e-69 268.9 563 59.3
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 1.4e-69 268.5 609 60.3
Nitab4.5_0002731g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.4e-69 267.7 522 39.5
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 1.2e-65 255.4 600 49.7
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 1.2e-65 255.4 434 58.5
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 6.2e-65 253.1 389 65.0
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 1.5e-63 248.4 378 61.6
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 7.5e-63 246.1 387 61.5
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 7.5e-63 246.1 609 54.2
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 2.9e-62 244.2 614 55.2
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 3.7e-62 243.8 613 57.7
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 8.3e-62 242.7 385 66.2
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 3.2e-61 240.7 609 58.0
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 1.5e-58 231.9 443 60.5
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 1.7e-54 218.4 393 62.3
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 8.4e-54 216.1 537 48.4
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 9.2e-53 212.6 608 57.9
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 2.7e-52 211.1 393 57.8
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 1.7e-51 208.4 476 62.8
MBI04_g20974_MAGBIO Magnolia biondii HOM05D007552 ORTHO05D009397 3.0e-51 207.6 389 63.0
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 5.1e-51 206.8 545 45.7
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 6.6e-51 206.5 165 53.3
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 1.5e-50 205.3 476 60.7
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 6.9e-48 196.4 349 62.5
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 4.4e-47 193.7 165 52.7
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 5.8e-47 193.4 612 47.5
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 6.0e-44 183.3 612 48.2
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 4.8e-41 173.7 613 50.4
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 1.1e-40 172.6 237 41.4
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 1.8e-40 171.8 560 51.2
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 2.6e-39 167.9 576 39.6
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 3.5e-36 157.5 595 46.1
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 1.8e-35 155.2 378 56.6
HPP92_024564 Vanilla planifolia HOM05D007552 ORTHO05D009397 1.8e-35 155.2 165 44.8
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 3.0e-35 154.5 519 45.3
TAR626G0440 Trochodendron aralioides HOM05D007552 ORTHO05D009397 4.3e-34 150.6 107 63.6
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 3.1e-32 144.4 540 40.6
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 9.0e-32 142.9 263 33.8
Os10g0578500 Oryza sativa ssp. japonica HOM05D007552 ORTHO05D009397 9.0e-32 142.9 165 39.4
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 3.8e-30 137.5 172 36.6
Zm00001eb025110 Zea mays HOM05D007552 ORTHO05D009397 2.4e-29 134.8 385 44.9
AT1G16830 Arabidopsis thaliana HOM05D007552 ORTHO05D009397 1.3e-27 129.0 168 36.3
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 6.7e-27 126.7 524 22.3
Cpa.g.sc155.17 Carica papaya HOM05D007552 ORTHO05D009397 1.5e-26 125.6 103 56.3
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 2.8e-25 121.3 565 20.5
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 4.8e-25 120.6 565 20.4
TAR362G0754 Trochodendron aralioides HOM05D007552 ORTHO05D009397 1.4e-24 119.0 132 43.9
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 5.3e-24 117.1 165 32.7
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 9.0e-24 116.3 523 23.5
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 9.0e-24 116.3 523 23.5
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 2.6e-23 114.8 613 40.8
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 7.6e-23 113.2 601 30.4
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 7.6e-23 113.2 577 36.4
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 1.7e-22 112.1 427 50.1
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 4.9e-22 110.5 542 33.6
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 5.5e-21 107.1 579 31.6
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 9.3e-21 106.3 509 42.8
Actinidia21884 Actinidia chinensis HOM05D007552 ORTHO05D009397 6.7e-19 100.1 64 65.6
MD17G1163200 Malus domestica HOM05D007552 ORTHO05D009397 2.1e-17 95.1 76 53.9
Carub.0005s1609 Capsella rubella HOM05D000424 ORTHO05D000355 1.6e-09 68.9 168 26.8
SEGI_35089 Sequoiadendron giganteum HOM05D007552 ORTHO05D009397 6.3e-09 67.0 88 31.8
MBI07_g03828_MAGBIO Magnolia biondii HOM05D007202 ORTHO05D009125 8.2e-09 66.6 132 31.1
BcaB01g00677 Brassica carinata HOM05D000424 ORTHO05D000355 1.1e-08 66.2 167 26.9
Ah.08g214310 Amaranthus hybridus HOM05D000424 ORTHO05D000355 1.4e-08 65.9 171 26.3
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 1.4e-08 65.9 165 26.1
PSO782G4392 Papaver somniferum HOM05D007202 ORTHO05D009125 3.1e-08 64.7 133 30.8
Thhalv10010190m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 5.3e-08 63.9 168 25.6
Aa31LG4G18220 Aethionema arabicum HOM05D000424 ORTHO05D000355 6.9e-08 63.5 139 26.6
Sp5g12350 Schrenkiella parvula HOM05D000424 ORTHO05D000355 6.9e-08 63.5 168 25.0
Thhalv10003830m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 9.1e-08 63.2 166 23.5
Aqoxy2G03436 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 2.6e-07 61.6 170 26.5
QL06p001583 Quercus lobata HOM05D000424 ORTHO05D000355 3.4e-07 61.2 141 29.1
SEGI_34039 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 3.4e-07 61.2 172 25.0
AT5G65820 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 4.5e-07 60.8 166 22.9
EL10Ac9g22973 Beta vulgaris HOM05D007202 ORTHO05D009125 4.5e-07 60.8 133 29.3
THA.LOC104808562 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 4.5e-07 60.8 141 26.2
arahy.Tifrunner.gnm1.ann1.5FY1X2 Arachis hypogaea HOM05D000424 ORTHO05D008586 7.7e-07 60.1 154 27.3
AUR62017720 Chenopodium quinoa HOM05D007202 ORTHO05D009125 7.7e-07 60.1 135 28.9
Lalb_Chr02g0143591 Lupinus albus HOM05D007202 ORTHO05D009125 7.7e-07 60.1 176 27.8
Manes.06G147400 Manihot esculenta HOM05D005770 ORTHO05D006702 7.7e-07 60.1 153 29.4
PGR042G3217 Punica granatum HOM05D000424 ORTHO05D000355 7.7e-07 60.1 132 29.5
AL8G43540 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 1.0e-06 59.7 137 24.8
CSS0029634 Camellia sinensis var. sinensis HOM05D007173 ORTHO05D009151 1.3e-06 59.3 159 25.2
HPP92_016385 Vanilla planifolia HOM05D007173 ORTHO05D009151 1.3e-06 59.3 159 28.3
Cpa.g.sc58.66 Carica papaya HOM05D000424 ORTHO05D000355 1.7e-06 58.9 136 27.9
Migut.L00219 Erythranthe guttata HOM05D000424 ORTHO05D000355 1.7e-06 58.9 168 22.0
Carub.0008s2671 Capsella rubella HOM05D000424 ORTHO05D000355 2.2e-06 58.5 166 22.9
CiPaw.05G116100 Carya illinoinensis HOM05D000424 ORTHO05D008586 2.2e-06 58.5 156 25.6
Thecc.04G235900 Theobroma cacao HOM05D000424 ORTHO05D000355 2.2e-06 58.5 151 27.8
CARHR279810 Cardamine hirsuta HOM05D000424 ORTHO05D000355 2.9e-06 58.2 162 24.1
CSS0050477 Camellia sinensis var. sinensis HOM05D007173 ORTHO05D009151 3.8e-06 57.8 159 24.5
EL10Ac7g17845 Beta vulgaris HOM05D000424 ORTHO05D000355 5.0e-06 57.4 136 29.4
CiPaw.01G197700 Carya illinoinensis HOM05D000424 ORTHO05D000355 5.0e-06 57.4 141 27.0
Ca_24414_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 5.0e-06 57.4 164 26.8
HanXRQChr02g0043781 Helianthus annuus HOM05D007383 ORTHO05D009254 5.0e-06 57.4 168 27.4
HanXRQChr14g0455831 Helianthus annuus HOM05D007383 ORTHO05D009254 5.0e-06 57.4 168 27.4
PSO782G4466 Papaver somniferum HOM05D000424 ORTHO05D008586 5.0e-06 57.4 163 27.6
Sp2g28910 Schrenkiella parvula HOM05D000424 ORTHO05D000355 5.0e-06 57.4 166 22.9
Ciclev10031257m.g Citrus clementina HOM05D000424 ORTHO05D008586 6.5e-06 57.0 155 24.5
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 6.5e-06 57.0 169 24.9
Eucgr.H03429 Eucalyptus grandis HOM05D000424 ORTHO05D000355 6.5e-06 57.0 165 25.5
Rhsim03G0234200 Rhododendron simsii HOM05D000001 ORTHO05D000003 6.5e-06 57.0 100 31.0
arahy.Tifrunner.gnm1.ann1.QBYX8U Arachis hypogaea HOM05D000424 ORTHO05D008586 8.5e-06 56.6 146 27.4
Cfa008465 Carpinus fangiana HOM05D000424 ORTHO05D000355 8.5e-06 56.6 135 25.9
CsaV3_2G032830 Cucumis sativus L. HOM05D000424 ORTHO05D000355 8.5e-06 56.6 151 26.5
Duzib106G0003 Durio zibethinus HOM05D005973 ORTHO05D007285 8.5e-06 56.6 165 23.0


User provided reference genes

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