Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000058g0320 Nicotiana tabacum HOM05D000157 ORTHO05D000311 8.9e-96 353.6 178 100.0
Nitab4.5_0000683g0070 Nicotiana tabacum HOM05D000157 ORTHO05D000311 2.1e-52 209.5 117 94.9
Peaxi162Scf00284g00715 Petunia axillaris HOM05D000157 ORTHO05D000311 4.5e-47 191.8 119 79.8
PGSC0003DMG400015661 Solanum tuberosum HOM05D000086 ORTHO05D000311 3.5e-36 155.6 118 64.4
MSTRG.27319 Avicennia marina HOM05D000157 ORTHO05D000311 3.1e-32 142.5 120 60.8
Sopen06g017190 Solanum pennellii HOM05D000086 ORTHO05D000311 3.1e-32 142.5 123 57.7
Dinv10602 Davidia involucrata HOM05D000086 ORTHO05D000311 6.9e-32 141.4 129 58.1
Solyc06g051250.1 Solanum lycopersicum HOM05D000086 ORTHO05D000311 2.0e-31 139.8 118 58.5
Dinv21751 Davidia involucrata HOM05D000157 ORTHO05D000311 1.7e-30 136.7 124 56.5
Glyma.11G231400 Glycine max HOM05D000086 ORTHO05D000311 3.8e-30 135.6 122 57.4
Glyma.18G025700 Glycine max HOM05D000086 ORTHO05D000311 6.5e-30 134.8 122 58.2
Thecc.10G013500 Theobroma cacao HOM05D000157 ORTHO05D000311 1.1e-29 134.0 121 52.9
Oeu034917.1 Olea europaea HOM05D000086 ORTHO05D000311 1.4e-29 133.7 118 56.8
Medtr3g071300 Medicago truncatula HOM05D000157 ORTHO05D000311 2.5e-29 132.9 130 51.5
Cc02_g06240 Coffea canephora HOM05D000086 ORTHO05D000311 4.2e-29 132.1 142 54.2
Sed0024787 Sechium edule HOM05D000157 ORTHO05D000311 6.1e-28 128.3 118 55.9
Lalb_Chr23g0276961 Lupinus albus HOM05D000157 ORTHO05D000311 1.8e-27 126.7 125 52.8
TPR.G11207 Trifolium pratense HOM05D000086 ORTHO05D000311 1.8e-27 126.7 131 50.4
Lsat_1_v5_gn_2_124020 Lactuca sativa HOM05D000157 ORTHO05D000311 2.3e-27 126.3 120 51.7
Manes.10G010400 Manihot esculenta HOM05D000086 ORTHO05D000311 2.3e-27 126.3 133 50.4
VMungo1383G2255 Vigna mungo HOM05D000157 ORTHO05D000311 3.9e-27 125.6 121 55.4
Haze_17247 Corylus avellana HOM05D000157 ORTHO05D000311 5.1e-27 125.2 120 54.2
Phvul.001G244600 Phaseolus vulgaris HOM05D000157 ORTHO05D000311 5.1e-27 125.2 121 54.5
Migut.F00662 Erythranthe guttata HOM05D000157 ORTHO05D000311 6.7e-27 124.8 127 53.5
HanXRQChr14g0459461 Helianthus annuus HOM05D000086 ORTHO05D000311 8.8e-27 124.4 120 52.5
Peaxi162Scf00484g00008 Petunia axillaris HOM05D000157 ORTHO05D000311 1.5e-26 123.6 120 55.0
Atru.chr12.91 Acer truncatum HOM05D000086 ORTHO05D000311 3.3e-26 122.5 129 51.9
QL08p063447 Quercus lobata HOM05D000157 ORTHO05D000311 9.7e-26 120.9 127 50.4
Gorai.010G195900 Gossypium raimondii HOM05D000157 ORTHO05D000311 1.3e-25 120.6 118 52.5
Gohir.A06G162500 Gossypium hirsutum HOM05D000157 ORTHO05D000311 2.2e-25 119.8 118 52.5
Gohir.D06G168000 Gossypium hirsutum HOM05D000157 ORTHO05D000311 2.2e-25 119.8 118 52.5
Cfa001299 Carpinus fangiana HOM05D000157 ORTHO05D000311 3.7e-25 119.0 114 53.5
Duzib114G1050 Durio zibethinus HOM05D000157 ORTHO05D000311 4.8e-25 118.6 122 57.4
Sabra08G0052300 Salix brachista HOM05D000086 ORTHO05D000311 8.2e-25 117.9 121 49.6
Ca_15137_v3 Cicer arietinum L. HOM05D000086 ORTHO05D000311 1.8e-24 116.7 130 46.9
Oeu004682.1 Olea europaea HOM05D000440 ORTHO05D000311 4.1e-24 115.5 125 52.8
Hund13881 Selenicereus undatus HOM05D000086 ORTHO05D000311 5.3e-24 115.2 123 50.4
COL.COLO4_00279 Corchorus olitorius HOM05D000086 ORTHO05D000311 6.9e-24 114.8 124 50.8
Lj6g0009441 Lotus japonicus HOM05D000086 ORTHO05D000311 1.5e-23 113.6 120 49.2
Sc10g0002490 Simmondsia chinensis HOM05D000157 ORTHO05D000311 1.5e-23 113.6 120 48.3
Ciclev10032946m.g Citrus clementina HOM05D000157 ORTHO05D000311 2.0e-23 113.2 120 48.3
HanXRQChr07g0203161 Helianthus annuus HOM05D000086 ORTHO05D000311 2.0e-23 113.2 120 49.2
Potri.008G071000 Populus trichocarpa HOM05D000086 ORTHO05D000311 2.0e-23 113.2 121 46.3
AUR62022913 Chenopodium quinoa HOM05D000086 ORTHO05D000311 4.5e-23 112.1 142 46.5
Duzib128G2006 Durio zibethinus HOM05D000086 ORTHO05D000311 4.5e-23 112.1 118 49.2
vmacro10030 Vaccinium macrocarpon HOM05D000157 ORTHO05D000311 1.0e-22 110.9 111 51.4
CANSAT56G3355 Cannabis sativa HOM05D000157 ORTHO05D000311 1.1e-21 107.5 116 43.1
TAR623G0491 Trochodendron aralioides HOM05D000086 ORTHO05D000311 1.9e-21 106.7 127 44.9
Rhsim09G0178600 Rhododendron simsii HOM05D000157 ORTHO05D000311 2.5e-21 106.3 121 48.8
PGR044G0801 Punica granatum HOM05D000086 ORTHO05D000311 5.5e-21 105.1 124 47.6
RcHm_v2.0_Chr1g0370601 Rosa chinensis HOM05D000157 ORTHO05D000311 5.5e-21 105.1 120 47.5
TWI09G1268 Tripterygium wilfordii HOM05D000086 ORTHO05D000311 7.2e-21 104.8 118 49.2
Gohir.A10G239600 Gossypium hirsutum HOM05D000157 ORTHO05D000311 9.4e-21 104.4 118 47.5
CsaV3_5G010310 Cucumis sativus L. HOM05D000157 ORTHO05D000311 1.2e-20 104.0 124 50.0
Eucgr.J00188 Eucalyptus grandis HOM05D000086 ORTHO05D000311 1.2e-20 104.0 122 46.7
MELO3C018366.2 Cucumis melo HOM05D000157 ORTHO05D000311 1.6e-20 103.6 122 45.9
MD01G1155300 Malus domestica HOM05D000157 ORTHO05D000311 3.6e-20 102.4 125 43.2
ClCG07G004370 Citrullus lanatus HOM05D000086 ORTHO05D000311 4.7e-20 102.1 123 48.0
CANSAT56G0444 Cannabis sativa HOM05D000157 ORTHO05D000311 6.1e-20 101.7 112 42.9
Lalb_Chr08g0231611 Lupinus albus HOM05D000086 ORTHO05D000311 6.1e-20 101.7 123 45.5
Nn2g13195 Nelumbo nucifera HOM05D000086 ORTHO05D000311 1.0e-19 100.9 115 47.0
TAR636G1112 Trochodendron aralioides HOM05D000086 ORTHO05D000311 1.4e-19 100.5 119 47.9
TAR636G3133 Trochodendron aralioides HOM05D000086 ORTHO05D000311 1.4e-19 100.5 119 47.9
CiPaw.02G194000 Carya illinoinensis HOM05D000157 ORTHO05D000311 1.8e-19 100.1 125 41.6
Eucgr.L00233 Eucalyptus grandis HOM05D000157 ORTHO05D000311 1.8e-19 100.1 124 46.8
Glyma.02G264800 Glycine max HOM05D000440 ORTHO05D000311 1.8e-19 100.1 120 47.5
MBI15_g13978_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D000311 3.9e-19 99.0 119 43.7
Phvul.008G222500 Phaseolus vulgaris HOM05D000086 ORTHO05D000311 3.9e-19 99.0 125 47.2
FAN01G2645 Fragaria x ananassa HOM05D000157 ORTHO05D000311 6.7e-19 98.2 118 45.8
Lsat_1_v5_gn_9_62281 Lactuca sativa HOM05D000086 ORTHO05D000311 1.5e-18 97.1 127 44.9
SGA_v2.0_scaffold60G20979 Striga asiatica HOM05D000157 ORTHO05D000311 1.5e-18 97.1 92 57.6
LjContig00357g0025849 Lotus japonicus HOM05D000086 ORTHO05D000311 1.3e-17 94.0 121 45.5
arahy.Tifrunner.gnm1.ann1.VN1U1F Arachis hypogaea HOM05D000157 ORTHO05D000311 1.7e-17 93.6 135 40.0
Ca_05980_v3 Cicer arietinum L. HOM05D003447 ORTHO05D003967 8.2e-17 91.3 123 45.5
Gohir.D10G251500 Gossypium hirsutum HOM05D000157 ORTHO05D000311 1.1e-16 90.9 121 43.0
Gorai.011G292000 Gossypium raimondii HOM05D000157 ORTHO05D000311 1.1e-16 90.9 121 43.0
THA.LOC104826846 Tarenaya hassleriana HOM05D000086 ORTHO05D000311 1.4e-16 90.5 123 43.9
PSO017G0017 Papaver somniferum HOM05D000157 ORTHO05D000311 1.8e-16 90.1 141 36.9
PSO170G0598 Papaver somniferum HOM05D000086 ORTHO05D000311 2.4e-16 89.7 129 40.3
THA.LOC104823183 Tarenaya hassleriana HOM05D000086 ORTHO05D000311 2.4e-16 89.7 122 45.1
Prupe.2G252900 Prunus persica HOM05D000157 ORTHO05D000311 4.1e-16 89.0 122 45.9
Psat2g032400 Pisum sativum HOM05D000086 ORTHO05D000311 6.9e-16 88.2 120 43.3
FAN10G3483 Fragaria x ananassa HOM05D000157 ORTHO05D000311 9.1e-16 87.8 115 45.2
PGSC0003DMG400027719 Solanum tuberosum HOM05D000086 ORTHO05D000311 3.4e-15 85.9 114 42.1
FvH4_7g24750 Fragaria vesca HOM05D000157 ORTHO05D000311 7.7e-15 84.7 115 43.5
ATR0681G277 Amborella trichopoda HOM05D000086 ORTHO05D000311 1.0e-14 84.3 128 39.1
MD11G1068200 Malus domestica HOM05D000086 ORTHO05D000311 1.3e-14 84.0 127 39.4
Glyma.14G058000 Glycine max HOM05D000086 ORTHO05D000311 1.7e-14 83.6 121 43.0
Lalb_Chr17g0346851 Lupinus albus HOM05D000086 ORTHO05D000311 8.5e-14 81.3 121 39.7
AT3G11110 Arabidopsis thaliana HOM05D000086 ORTHO05D000311 1.1e-13 80.9 124 41.1
MSTRG.8938 Avicennia marina HOM05D000086 ORTHO05D000311 1.4e-13 80.5 128 39.1
DCAR_024816 Daucus carota HOM05D000157 ORTHO05D000311 1.4e-13 80.5 118 35.6
Carub.0003s1042 Capsella rubella HOM05D000086 ORTHO05D000311 3.2e-13 79.3 128 43.0
CARHR085690 Cardamine hirsuta HOM05D000086 ORTHO05D000311 3.2e-13 79.3 123 40.7
BolC5t34360H Brassica oleracea HOM05D000086 ORTHO05D000311 4.2e-13 79.0 121 40.5
Thecc.09G352500 Theobroma cacao HOM05D000086 ORTHO05D000311 5.5e-13 78.6 115 35.7
Prupe.6G053600 Prunus persica HOM05D000086 ORTHO05D000311 9.4e-13 77.8 126 34.9
Aa31LG3G4280 Aethionema arabicum HOM05D000086 ORTHO05D000311 1.2e-12 77.4 121 42.1
C05p56970 Brassica napus HOM05D000086 ORTHO05D000311 1.2e-12 77.4 125 41.6
AL3G22650 Arabidopsis lyrata HOM05D000086 ORTHO05D000311 2.1e-12 76.6 124 40.3
Sp3g09430 Schrenkiella parvula HOM05D000086 ORTHO05D000311 2.1e-12 76.6 121 38.8
A05p38160 Brassica napus HOM05D000086 ORTHO05D000311 3.6e-12 75.9 123 40.7
BraA05t22609Z Brassica rapa HOM05D000086 ORTHO05D000311 3.6e-12 75.9 123 40.7
Thhalv10022203m.g Eutrema salsugineum HOM05D000086 ORTHO05D000311 3.6e-12 75.9 127 40.2
Aqoxy4G02455 Aquilegia oxysepala HOM05D000086 ORTHO05D000311 4.7e-12 75.5 110 34.5
TWI79G0751 Tripterygium wilfordii HOM05D000086 ORTHO05D000311 6.1e-12 75.1 119 36.1
Ah.10g036650 Amaranthus hybridus HOM05D000157 ORTHO05D000311 8.0e-12 74.7 118 37.3
HanXRQChr09g0251761 Helianthus annuus HOM05D000086 ORTHO05D000311 1.0e-11 74.3 120 38.3
Ah.16g103690 Amaranthus hybridus HOM05D000086 ORTHO05D000311 6.7e-11 71.6 118 35.6
FAN06G2507 Fragaria x ananassa HOM05D000157 ORTHO05D000311 6.7e-11 71.6 115 40.0
Medtr5g082940 Medicago truncatula HOM05D000086 ORTHO05D000311 6.7e-11 71.6 120 37.5
BcaC05g29402 Brassica carinata HOM05D000086 ORTHO05D000311 3.3e-10 69.3 117 41.9
Cpa.g.sc2.424 Carica papaya HOM05D000086 ORTHO05D000311 4.4e-10 68.9 141 33.3
Oeu034918.1 Olea europaea HOM05D000086 ORTHO05D000311 1.3e-09 67.4 71 45.1
BraA03t12852Z Brassica rapa HOM05D000086 ORTHO05D000311 2.2e-09 66.6 125 36.8
A03p36890 Brassica napus HOM05D000086 ORTHO05D000311 2.8e-09 66.2 123 35.8
COL.COLO4_11090 Corchorus olitorius HOM05D000086 ORTHO05D000311 2.8e-09 66.2 124 35.5
MD03G1064400 Malus domestica HOM05D000086 ORTHO05D000311 4.8e-09 65.5 127 37.8
BcaC01g04145 Brassica carinata HOM05D000086 ORTHO05D000311 6.3e-09 65.1 123 35.0
C03p44690 Brassica napus HOM05D000086 ORTHO05D000311 6.3e-09 65.1 117 35.9
BolC3t16731H Brassica oleracea HOM05D000086 ORTHO05D000311 6.3e-09 65.1 117 35.9
HPP92_015578 Vanilla planifolia HOM05D000086 ORTHO05D000311 3.1e-08 62.8 119 34.5
Os01g0830900 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D000311 9.1e-08 61.2 133 29.3
Rhsim04G0126300 Rhododendron simsii HOM05D000440 ORTHO05D000311 9.1e-08 61.2 101 41.6
Lj8C64G7 Lonicera japonica HOM05D000157 ORTHO05D000311 2.9e-06 56.2 63 47.6


User provided reference genes

Program Settings