Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 0.0e+00 1495.7 724 100.0
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 0.0e+00 1432.9 724 96.1
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 0.0e+00 1288.1 730 86.6
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 0.0e+00 1287.7 725 86.8
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 0.0e+00 1284.6 725 86.3
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 0.0e+00 1276.2 724 85.9
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 9.6e-290 1000.0 730 65.8
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 6.9e-280 967.2 726 63.6
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 7.6e-279 963.8 766 62.0
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.0e-275 953.4 711 65.1
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 8.7e-275 950.3 717 63.6
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 3.7e-273 944.9 720 62.4
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.0e-271 939.1 717 62.8
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.6e-271 938.7 684 64.9
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 4.5e-271 937.9 685 65.8
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 4.6e-268 927.9 715 63.4
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 3.0e-267 925.2 725 60.4
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.3e-266 921.8 718 61.7
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 2.8e-265 918.7 728 61.7
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.4e-264 916.4 693 63.1
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 1.4e-264 916.4 734 61.9
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 6.9e-264 914.1 726 60.3
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 6.9e-264 914.1 735 60.1
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 5.9e-263 911.0 724 61.2
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 5.9e-263 911.0 724 61.3
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.0e-262 910.2 710 60.8
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.3e-262 909.8 722 61.9
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.7e-262 909.4 705 61.8
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.7e-262 909.4 674 63.8
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.4e-261 906.4 730 61.1
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.9e-261 906.0 730 62.2
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 9.4e-261 903.7 734 59.8
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.0e-259 900.2 711 60.1
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.5e-258 896.3 687 63.2
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 4.8e-257 891.3 687 63.0
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 8.2e-257 890.6 612 68.1
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.1e-256 888.6 687 62.9
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.5e-255 886.3 746 60.5
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.3e-254 883.2 752 60.0
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 5.0e-254 881.3 721 59.5
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 6.5e-254 880.9 728 60.2
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 3.2e-253 878.6 724 60.2
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.1e-252 875.9 770 58.7
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 2.7e-252 875.5 673 62.7
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 6.1e-252 874.4 700 60.0
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 7.9e-252 874.0 682 61.3
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 6.7e-251 870.9 687 61.9
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 2.0e-250 869.4 725 58.8
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 4.4e-250 868.2 668 62.9
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 7.4e-250 867.5 716 58.7
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.7e-249 866.3 720 60.0
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 6.3e-249 864.4 727 58.7
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.1e-248 863.6 712 59.3
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.4e-248 863.2 695 60.3
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.8e-248 862.8 742 57.4
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 3.1e-248 862.1 713 59.5
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 4.1e-248 861.7 714 60.1
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 7.0e-248 860.9 746 57.5
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 3.5e-247 858.6 679 61.1
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 5.9e-247 857.8 672 62.1
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 5.9e-247 857.8 687 61.0
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 3.8e-246 855.1 588 69.2
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.1e-245 853.6 725 58.2
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 2.5e-245 852.4 672 61.0
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 7.2e-245 850.9 676 61.2
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.6e-244 849.7 687 61.0
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.6e-244 849.7 728 55.8
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 2.3e-243 845.9 678 60.8
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 8.8e-243 844.0 722 58.3
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 2.0e-242 842.8 709 58.4
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 9.7e-242 840.5 679 59.8
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 2.8e-241 839.0 729 55.3
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 6.3e-241 837.8 679 59.9
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 6.5e-238 827.8 699 57.4
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 8.5e-238 827.4 680 59.3
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.3e-235 819.3 629 62.6
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.3e-233 813.5 677 58.8
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 5.3e-232 808.1 591 64.3
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 2.9e-230 802.4 690 58.0
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 4.2e-229 798.5 691 57.5
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.8e-227 793.1 742 52.4
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 2.3e-227 792.7 892 48.2
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 8.8e-227 790.8 729 55.3
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 8.3e-225 784.3 683 55.8
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.4e-224 783.5 618 60.5
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 1.4e-224 783.5 736 53.9
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.2e-223 780.4 708 56.5
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.6e-223 780.0 691 54.7
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.7e-223 779.2 679 54.3
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 3.5e-223 778.9 679 54.3
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.7e-222 776.5 681 54.9
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 5.0e-222 775.0 691 54.3
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.5e-221 772.7 686 54.1
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 2.1e-220 769.6 674 54.3
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 6.1e-220 768.1 680 54.7
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.0e-219 767.3 677 53.9
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 4.4e-218 761.9 676 53.7
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 7.5e-218 761.1 677 53.8
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 7.5e-218 761.1 677 53.8
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 3.7e-217 758.8 726 51.4
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.8e-216 756.5 748 51.2
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.4e-216 756.1 677 53.3
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.7e-215 752.7 740 50.9
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-214 750.4 729 51.0
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 8.6e-214 747.7 676 54.7
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.5e-213 746.9 671 57.5
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 9.5e-213 744.2 674 56.7
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 8.0e-212 741.1 687 52.1
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 4.0e-211 738.8 738 51.1
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 6.8e-211 738.0 679 52.3
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 9.8e-210 734.2 690 51.6
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.7e-209 732.3 736 52.0
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 3.7e-209 732.3 754 49.3
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.0e-207 726.5 765 50.8
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 1.1e-205 720.7 730 49.6
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 4.3e-205 718.8 684 54.7
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 4.3e-205 718.8 693 52.5
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.8e-203 713.4 535 64.7
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 8.6e-198 694.5 651 53.8
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 5.6e-197 691.8 687 51.4
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 7.3e-197 691.4 682 53.2
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 6.2e-196 688.3 736 48.5
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 6.2e-196 688.3 681 50.1
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 8.1e-196 688.0 748 49.5
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 2.0e-194 683.3 677 52.3
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.7e-193 680.2 679 50.8
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.3e-182 643.3 692 47.3
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 1.3e-180 637.5 530 57.4
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.7e-177 627.1 713 47.7
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.1e-173 614.4 560 55.0
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 2.8e-172 609.8 678 47.5
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 4.1e-155 552.7 324 85.8
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.0e-150 538.1 546 49.6
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 3.6e-135 486.5 312 70.2
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 1.0e-134 485.0 424 54.0
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 3.1e-123 446.8 390 55.6
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 1.7e-116 424.5 299 64.5
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 7.7e-114 415.6 401 50.6
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 2.6e-109 400.6 407 51.1
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 4.3e-104 383.3 456 43.9
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 4.0e-102 376.7 231 75.3
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 4.4e-101 373.2 322 52.8
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 8.9e-94 349.0 578 35.8
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 9.2e-91 339.0 209 81.8
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 5.0e-89 333.2 576 35.6
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.4e-83 315.1 545 34.9
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.4e-83 315.1 312 47.1
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 5.8e-61 240.0 156 68.6
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 4.2e-59 233.8 213 56.8
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 3.1e-54 217.6 247 47.8
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.6e-53 214.5 211 51.2
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 3.4e-53 214.2 139 70.5
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 7.4e-48 196.4 226 45.6
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 5.3e-46 190.3 121 68.6
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.2e-45 189.1 129 65.9
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 7.1e-43 179.9 387 30.5
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.4e-38 165.6 181 47.5
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.7e-36 158.7 99 70.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.7e-36 158.7 99 70.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.7e-36 158.7 99 70.7
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 3.3e-32 144.4 280 34.6
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.6e-26 125.6 254 30.3
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 6.1e-26 123.6 252 30.2
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 8.8e-25 119.8 163 36.2
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 4.5e-21 107.5 237 30.8
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 3.8e-20 104.4 147 39.5
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 7.2e-19 100.1 59 74.6
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.6e-18 97.8 82 61.0
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.0e-16 92.0 114 40.4
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.6e-13 81.6 48 70.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.6e-13 81.6 48 70.8
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 8.0e-10 70.1 54 59.3
BraA01t04202Z Brassica rapa HOM05D004070 ORTHO05D107995 3.1e-06 58.2 44 56.8


User provided reference genes

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