Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.0e-185 652.1 439 100.0
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.1e-162 576.2 437 89.5
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 4.9e-127 458.8 442 74.9
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.1e-126 457.6 442 74.7
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.8e-124 450.3 441 73.2
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 3.8e-111 406.0 474 69.8
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 1.6e-61 241.1 276 49.6
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 1.4e-60 238.0 276 48.2
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 4.3e-54 216.5 210 53.3
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 1.0e-52 211.8 215 49.3
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 4.0e-52 209.9 215 54.0
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 4.4e-51 206.5 276 44.2
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 2.2e-50 204.1 275 44.4
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 2.9e-50 203.8 262 44.7
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 8.3e-50 202.2 213 51.6
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.1e-49 201.8 221 48.9
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 1.9e-49 201.1 219 48.4
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 2.0e-48 197.6 220 47.7
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 1.3e-47 194.9 219 50.2
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.2e-45 188.3 268 43.3
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 2.1e-45 187.6 219 46.6
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 8.0e-45 185.7 205 48.3
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.1e-44 185.3 219 47.0
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 4.0e-44 183.3 216 45.4
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 1.2e-43 181.8 276 46.4
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 1.2e-43 181.8 251 46.6
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 1.2e-43 181.8 221 44.3
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 5.8e-43 179.5 283 41.7
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 1.3e-42 178.3 182 53.8
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.1e-41 175.3 259 43.2
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.1e-41 175.3 185 50.8
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 1.4e-41 174.9 210 47.1
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 1.4e-41 174.9 224 45.5
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 1.9e-41 174.5 217 46.5
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 1.9e-41 174.5 274 38.0
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.4e-41 174.1 222 46.4
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 5.4e-41 172.9 222 46.4
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.6e-40 171.4 211 46.4
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.6e-40 171.4 211 46.4
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 1.6e-40 171.4 211 48.3
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 2.7e-40 170.6 211 48.8
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 1.0e-39 168.7 143 58.7
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 1.3e-39 168.3 202 45.5
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.3e-39 167.5 211 47.4
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.3e-39 167.5 211 47.4
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.3e-39 167.5 211 47.4
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 2.3e-39 167.5 300 41.0
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.9e-39 166.8 218 43.6
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 5.1e-39 166.4 216 45.4
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.6e-39 166.0 180 52.8
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 1.9e-38 164.5 210 40.0
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.5e-38 164.1 300 37.0
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 9.5e-38 162.2 176 49.4
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.2e-37 161.8 211 45.0
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 2.1e-37 161.0 211 46.4
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 2.8e-37 160.6 251 39.0
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 2.8e-37 160.6 225 44.4
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 3.6e-37 160.2 200 44.5
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 3.6e-37 160.2 222 43.2
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 6.2e-37 159.5 215 44.7
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 8.1e-37 159.1 301 35.5
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 1.8e-36 157.9 220 43.6
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 1.8e-36 157.9 289 35.3
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 3.1e-36 157.1 213 45.1
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 3.1e-36 157.1 215 44.2
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 3.1e-36 157.1 215 42.3
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 5.2e-36 156.4 296 37.2
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 6.8e-36 156.0 225 44.9
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 2.0e-35 154.5 217 44.7
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 4.4e-35 153.3 225 43.6
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 4.4e-35 153.3 223 44.8
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 9.9e-35 152.1 283 37.8
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 1.3e-34 151.8 224 45.1
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 1.3e-34 151.8 213 43.7
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.3e-34 151.8 221 43.4
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 2.2e-34 151.0 214 43.5
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.9e-34 150.6 217 37.3
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 3.7e-34 150.2 284 38.0
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 8.3e-34 149.1 225 42.2
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 8.3e-34 149.1 222 42.3
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 8.3e-34 149.1 222 42.3
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 2.7e-32 144.1 213 42.7
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.5e-32 143.7 205 42.4
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.3e-31 141.7 179 45.8
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.7e-31 141.4 183 47.5
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 1.7e-31 141.4 214 41.6
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 3.0e-31 140.6 213 41.3
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 3.0e-31 140.6 213 39.9
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 3.9e-31 140.2 196 46.9
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 3.9e-31 140.2 294 34.7
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 5.1e-31 139.8 223 41.7
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 6.6e-31 139.4 196 42.3
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 6.6e-31 139.4 184 46.2
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 1.1e-30 138.7 220 44.1
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.5e-30 138.3 212 41.0
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 2.5e-30 137.5 129 55.8
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 3.3e-30 137.1 244 39.8
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 3.3e-30 137.1 178 45.5
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 4.3e-30 136.7 212 35.8
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 4.3e-30 136.7 205 40.5
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 5.6e-30 136.3 182 40.1
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 7.3e-30 136.0 185 45.4
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 9.6e-30 135.6 234 41.0
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 1.6e-29 134.8 202 42.6
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 3.6e-29 133.7 213 40.8
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 4.7e-29 133.3 201 39.8
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 6.2e-29 132.9 210 40.0
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 6.2e-29 132.9 374 27.8
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 6.2e-29 132.9 204 41.7
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 1.1e-28 132.1 212 34.0
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 8.9e-28 129.0 177 36.2
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 1.2e-27 128.6 186 41.4
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 1.2e-27 128.6 224 38.8
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 2.0e-27 127.9 118 54.2
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 3.4e-27 127.1 139 48.9
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 5.8e-27 126.3 212 35.4
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 1.3e-26 125.2 257 32.3
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 2.9e-26 124.0 182 42.9
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 3.8e-26 123.6 212 34.9
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 6.4e-26 122.9 234 36.8
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 1.1e-25 122.1 389 28.3
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 1.4e-25 121.7 173 37.6
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 1.4e-25 121.7 142 50.7
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 2.4e-25 120.9 215 38.6
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 2.4e-25 120.9 208 37.5
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 3.2e-25 120.6 276 33.3
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 7.1e-25 119.4 202 37.6
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 7.1e-25 119.4 272 32.7
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 1.6e-24 118.2 209 35.4
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 3.5e-24 117.1 255 34.5
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 7.8e-24 115.9 102 59.8
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 1.1e-22 112.1 208 33.7
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 1.5e-22 111.7 231 33.8
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 2.5e-22 110.9 194 36.6
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 9.6e-22 109.0 174 40.2
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.3e-21 108.6 178 33.7
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 6.2e-21 106.3 193 33.2
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 1.8e-20 104.8 220 35.5
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 2.6e-19 100.9 182 35.7
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 7.6e-19 99.4 212 30.7
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 3.8e-18 97.1 193 35.2
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 8.4e-18 95.9 186 38.2
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 1.4e-17 95.1 107 50.5
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.4e-17 94.4 212 28.8
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 3.2e-17 94.0 210 34.8
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 5.4e-17 93.2 219 32.0
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.2e-16 92.0 212 28.8
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 7.9e-16 89.4 232 32.3
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 3.0e-15 87.4 220 35.0
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 4.8e-13 80.1 199 30.7
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 8.1e-13 79.3 280 23.9
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 1.1e-12 79.0 239 29.3
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 1.4e-12 78.6 212 28.3
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 3.1e-12 77.4 293 30.4
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 6.9e-12 76.3 236 25.8
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 1.2e-11 75.5 280 28.2
Nitab4.5_0005537g0030 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.2e-11 75.5 210 30.5
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 2.0e-11 74.7 196 32.7
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 5.8e-11 73.2 289 29.1
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 1.3e-10 72.0 218 29.8
SGA_v2.0_scaffold305G47963 Striga asiatica HOM05D007666 ORTHO05D009567 2.9e-10 70.9 220 30.9
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 8.4e-10 69.3 286 25.5
SalBow1G7426 Salvia bowleyana HOM05D007666 ORTHO05D009567 3.2e-09 67.4 192 28.1
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 3.5e-08 63.9 262 24.0
TWI60G1340 Tripterygium wilfordii HOM05D007666 ORTHO05D009567 3.5e-08 63.9 221 27.6
Oeu057996.1 Olea europaea HOM05D003589 ORTHO05D005170 6.0e-08 63.2 144 29.9
Nn2g10296 Nelumbo nucifera HOM05D003589 ORTHO05D005170 1.1e-06 58.9 126 29.4
Dinv37538 Davidia involucrata HOM05D007666 ORTHO05D009567 5.6e-06 56.6 143 28.7


User provided reference genes

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