Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 0.0e+00 2003.8 1003 100.0
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 0.0e+00 1124.4 646 87.8
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 0.0e+00 1124.4 645 87.8
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 0.0e+00 1117.1 645 87.1
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 0.0e+00 1105.9 646 86.2
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 6.2e-311 1070.8 644 84.6
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 6.4e-260 901.4 647 70.2
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 5.1e-249 865.1 634 68.6
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 6.7e-249 864.8 664 66.6
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 1.3e-244 850.5 649 67.6
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 1.4e-243 847.0 636 67.6
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 4.6e-242 842.0 645 66.2
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 1.5e-240 837.0 649 66.1
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 3.7e-239 832.4 640 66.4
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 1.4e-238 830.5 640 66.6
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 1.0e-236 824.3 639 66.7
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 5.0e-236 822.0 650 64.0
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 1.1e-235 820.8 649 65.3
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 1.1e-235 820.8 647 65.2
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 3.2e-235 819.3 647 65.2
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 3.6e-234 815.8 677 61.0
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 4.6e-234 815.5 649 64.9
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 7.9e-234 814.7 640 63.9
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 1.4e-233 813.9 637 64.4
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 1.5e-232 810.4 648 63.0
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 1.5e-232 810.4 640 64.7
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 9.7e-232 807.7 635 65.8
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 3.7e-231 805.8 654 62.2
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 1.4e-230 803.9 654 62.1
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 3.4e-229 799.3 635 64.6
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 7.7e-229 798.1 649 63.5
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 1.3e-228 797.3 647 62.8
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 1.4e-227 793.9 640 63.0
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 1.9e-227 793.5 653 61.6
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 1.9e-227 793.5 628 65.8
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 1.6e-226 790.4 649 61.6
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 7.9e-226 788.1 648 62.8
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 1.0e-225 787.7 644 62.6
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.3e-225 786.6 653 61.4
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 3.9e-225 785.8 641 63.0
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 2.0e-224 783.5 638 63.5
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 3.3e-224 782.7 647 63.2
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 9.7e-224 781.2 637 64.5
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 1.3e-223 780.8 671 61.8
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 3.7e-223 779.2 646 63.8
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 1.8e-222 776.9 569 67.7
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 4.1e-222 775.8 637 63.1
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 9.1e-222 774.6 645 62.3
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 1.5e-221 773.9 640 61.6
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 2.0e-221 773.5 634 63.2
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 2.6e-221 773.1 638 62.5
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 2.6e-221 773.1 638 62.4
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 5.9e-221 771.9 638 63.2
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 2.2e-220 770.0 638 62.4
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 2.2e-220 770.0 650 61.8
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 2.9e-220 769.6 638 62.1
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 5.0e-220 768.8 643 63.1
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 5.0e-220 768.8 642 63.1
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 8.5e-220 768.1 656 60.1
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 5.5e-219 765.4 647 61.2
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 5.5e-219 765.4 645 60.8
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 7.2e-219 765.0 639 62.1
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 1.6e-218 763.8 642 61.2
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 4.7e-218 762.3 643 60.8
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 6.1e-218 761.9 638 62.7
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 8.0e-218 761.5 603 64.0
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 3.0e-217 759.6 670 59.4
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 5.2e-217 758.8 644 60.9
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 8.8e-217 758.1 644 61.2
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 1.1e-216 757.7 640 60.9
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.0e-216 756.9 610 62.3
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 7.4e-216 755.0 645 60.5
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 4.8e-215 752.3 643 62.1
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 6.3e-215 751.9 648 60.2
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 6.3e-215 751.9 637 61.5
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 8.2e-215 751.5 643 60.5
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 1.8e-214 750.4 648 59.9
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 3.1e-214 749.6 638 61.3
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 1.6e-213 747.3 644 60.4
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 3.5e-213 746.1 643 60.2
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 3.5e-213 746.1 645 60.0
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 4.5e-213 745.7 640 60.0
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 7.7e-213 745.0 648 59.6
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 2.2e-212 743.4 645 59.8
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 2.2e-212 743.4 590 62.9
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 4.2e-211 739.2 646 58.7
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 5.5e-211 738.8 647 59.4
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 1.6e-210 737.3 647 59.2
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 4.7e-210 735.7 645 59.1
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 1.0e-209 734.6 647 59.2
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 3.8e-204 716.1 586 63.1
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 3.2e-203 713.0 578 63.7
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 7.2e-203 711.8 635 56.9
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 2.2e-199 700.3 581 62.1
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 5.0e-196 689.1 583 61.4
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 1.9e-195 687.2 635 56.4
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 2.5e-195 686.8 647 56.6
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 4.9e-191 672.5 625 54.4
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 1.9e-182 644.0 617 55.4
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 1.7e-172 610.9 544 57.7
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 3.0e-172 610.1 549 57.2
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 4.3e-155 553.1 665 48.3
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 4.3e-155 553.1 473 57.5
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 5.3e-153 546.2 564 52.0
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 7.6e-152 542.3 576 51.9
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 3.3e-147 526.9 493 57.0
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 1.8e-137 494.6 431 58.9
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.0e-136 491.1 621 45.9
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.6e-133 481.5 564 48.8
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 2.9e-119 434.1 632 42.1
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 2.0e-115 421.4 836 35.2
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 3.4e-112 410.6 456 48.7
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 4.8e-106 390.2 391 57.3
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 1.1e-94 352.4 519 40.1
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 5.9e-88 330.1 202 73.8
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 1.2e-83 315.8 396 47.7
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 3.8e-79 300.8 279 55.6
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 7.8e-72 276.6 146 95.9
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 5.6e-70 270.4 218 63.3
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 6.0e-64 250.4 603 32.7
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 3.3e-62 244.6 307 46.6
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 3.3e-54 218.0 227 50.7
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.4e-52 212.6 650 29.2
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 1.8e-52 212.2 645 28.7
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 3.2e-49 201.4 682 28.0
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 1.3e-47 196.1 172 63.4
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 1.9e-46 192.2 400 37.2
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 4.7e-45 187.6 298 40.9
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 1.1e-44 186.4 226 47.3
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.8e-44 185.7 272 42.6
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 6.4e-42 177.2 119 73.1
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 1.1e-36 159.8 169 51.5
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.9e-34 151.8 331 34.1
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 1.0e-31 143.3 123 61.0
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 1.3e-31 142.9 109 71.6
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 2.3e-31 142.1 143 48.3
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.3e-29 136.3 179 40.2
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 1.1e-28 133.3 107 58.9
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 5.3e-28 131.0 242 38.4
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.2e-27 129.8 242 38.0
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.5e-27 129.4 242 38.0
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.5e-27 129.4 242 38.0
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.6e-27 128.6 218 39.4
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 4.6e-24 117.9 186 40.9
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.0e-23 116.7 186 40.3
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.3e-23 115.5 186 40.3
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.9e-22 112.5 186 40.3
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 2.9e-18 98.6 62 83.9
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 2.5e-17 95.5 62 82.3
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 1.3e-15 89.7 187 35.3
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 1.2e-11 76.6 131 37.4
Lsat_1_v5_gn_5_150541 Lactuca sativa HOM05D005051 ORTHO05D048368 4.5e-11 74.7 69 53.6
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 2.2e-10 72.4 69 52.2
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 1.6e-08 66.2 40 67.5
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 2.1e-08 65.9 50 60.0


User provided reference genes

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