Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 0.0e+00 2448.7 1323 100.0
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 0.0e+00 2042.3 1334 84.3
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 0.0e+00 1376.3 1347 63.0
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 0.0e+00 1288.1 1357 60.6
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 0.0e+00 1266.9 1357 59.9
CAN.G650.29 Capsicum annuum HOM05D012928 ORTHO05D003355 1.6e-295 1020.0 1400 50.2
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 1.2e-285 987.3 1439 48.2
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.2e-126 457.6 442 64.0
Nitab4.5_0001246g0040 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.9e-86 325.5 441 51.7
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 1.1e-36 160.2 1436 26.4
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 4.1e-28 131.7 1426 23.4
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 9.1e-28 130.6 104 63.5
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 4.5e-27 128.3 238 38.7
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 5.9e-27 127.9 91 65.9
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 7.7e-27 127.5 90 65.6
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.0e-26 127.1 1409 24.8
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.7e-26 126.3 358 32.1
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 1.7e-26 126.3 1356 25.2
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 2.9e-26 125.6 91 63.7
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 1.4e-25 123.2 91 62.6
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 1.6e-24 119.8 83 68.7
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 4.7e-24 118.2 104 59.6
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 2.3e-23 115.9 85 64.7
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 2.3e-23 115.9 1498 24.0
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 3.0e-23 115.5 86 64.0
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 1.1e-22 113.6 87 65.5
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 1.1e-22 113.6 87 58.6
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 1.5e-22 113.2 386 29.5
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 2.6e-22 112.5 101 55.4
CAN.G350.32 Capsicum annuum HOM05D012928 ORTHO05D003355 5.7e-22 111.3 107 63.6
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 7.4e-22 110.9 86 64.0
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 1.4e-20 106.7 84 60.7
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 2.4e-20 105.9 107 50.5
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 2.4e-20 105.9 1349 23.7
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 3.1e-20 105.5 85 58.8
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 9.1e-20 104.0 95 52.6
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 1.2e-19 103.6 1391 23.7
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 2.6e-19 102.4 87 57.5
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 2.6e-19 102.4 85 56.5
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 2.6e-19 102.4 1403 23.7
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 1.0e-18 100.5 86 55.8
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 1.3e-18 100.1 107 45.8
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 1.7e-18 99.8 94 52.1
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 2.2e-18 99.4 373 29.5
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 3.8e-18 98.6 1428 22.5
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 1.9e-17 96.3 393 27.0
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 1.9e-17 96.3 87 52.9
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.9e-17 96.3 87 49.4
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 9.4e-17 94.0 84 52.4
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 2.7e-16 92.4 88 50.0
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 2.7e-16 92.4 87 51.7
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 3.6e-16 92.0 86 50.0
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 4.7e-16 91.7 106 44.3
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 6.1e-16 91.3 88 50.0
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 8.0e-16 90.9 90 45.6
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.0e-15 90.5 97 44.3
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.0e-15 90.5 150 36.0
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 1.0e-15 90.5 93 46.2
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 1.8e-15 89.7 382 29.6
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 2.3e-15 89.4 81 50.6
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 2.3e-15 89.4 82 52.4
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 5.2e-15 88.2 121 36.4
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 5.2e-15 88.2 82 52.4
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 6.7e-15 87.8 98 50.0
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 1.2e-14 87.0 665 22.3
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 2.6e-14 85.9 1498 23.0
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 7.5e-14 84.3 81 48.1
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 7.5e-14 84.3 143 37.1
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 7.5e-14 84.3 98 48.0
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 2.2e-13 82.8 100 36.0
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.8e-13 82.4 678 25.1
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 4.8e-13 81.6 99 46.5
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 4.8e-13 81.6 99 46.5
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 6.3e-13 81.3 85 44.7
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 8.2e-13 80.9 99 45.5
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 8.2e-13 80.9 99 45.5
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 8.2e-13 80.9 1390 23.7
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 1.1e-12 80.5 90 47.8
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 1.8e-12 79.7 93 40.9
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 3.1e-12 79.0 93 45.2
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 4.1e-12 78.6 82 41.5
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 5.3e-12 78.2 80 45.0
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 5.3e-12 78.2 163 30.1
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 5.3e-12 78.2 81 42.0
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 5.3e-12 78.2 142 31.7
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 7.0e-12 77.8 1355 23.7
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 7.0e-12 77.8 97 43.3
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 9.1e-12 77.4 85 41.2
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 9.1e-12 77.4 83 41.0
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 9.1e-12 77.4 83 51.8
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.2e-11 77.0 81 43.2
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.6e-11 76.6 83 43.4
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 1.6e-11 76.6 79 43.0
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 2.0e-11 76.3 80 43.8
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 2.7e-11 75.9 80 42.5
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 2.7e-11 75.9 244 29.1
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 2.7e-11 75.9 80 42.5
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 3.5e-11 75.5 307 24.8
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 5.9e-11 74.7 83 41.0
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 7.7e-11 74.3 1401 21.4
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.0e-10 73.9 203 30.5
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.0e-10 73.9 167 29.9
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 1.0e-10 73.9 99 43.4
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 1.0e-10 73.9 99 43.4
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 1.0e-10 73.9 1419 22.0
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 1.0e-10 73.9 115 36.5
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.2e-10 72.8 81 45.7
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 2.2e-10 72.8 102 40.2
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 2.2e-10 72.8 83 39.8
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 2.9e-10 72.4 83 39.8
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.8e-10 72.0 90 44.4
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 3.8e-10 72.0 176 33.0
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 6.5e-10 71.2 94 40.4
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 8.5e-10 70.9 85 43.5
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 8.5e-10 70.9 81 37.0
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 1.1e-09 70.5 331 25.7
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 1.1e-09 70.5 331 25.7
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 1.5e-09 70.1 95 36.8
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.9e-09 69.7 81 38.3
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.9e-09 69.7 83 48.2
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 1.9e-09 69.7 81 40.7
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 2.5e-09 69.3 80 38.8
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 3.2e-09 68.9 81 40.7
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 5.5e-09 68.2 104 42.3
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 5.5e-09 68.2 104 42.3
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 7.2e-09 67.8 81 39.5
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 7.2e-09 67.8 1438 22.7
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 9.4e-09 67.4 349 26.1
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 9.4e-09 67.4 902 21.8
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 9.4e-09 67.4 83 39.8
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 9.4e-09 67.4 81 37.0
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.2e-08 67.0 89 46.1
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.2e-08 67.0 89 46.1
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 1.2e-08 67.0 1567 22.7
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 1.6e-08 66.6 80 40.0
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 1.6e-08 66.6 89 36.0
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.1e-08 66.2 79 43.0
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 2.1e-08 66.2 81 39.5
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 3.6e-08 65.5 80 38.8
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea HOM05D005863 ORTHO05D003355 3.6e-08 65.5 80 38.8
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 3.6e-08 65.5 79 39.2
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.6e-08 65.5 96 37.5
FvH4_4g25060 Fragaria vesca HOM05D005863 ORTHO05D017031 3.6e-08 65.5 83 44.6
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 3.6e-08 65.5 85 36.5
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 4.7e-08 65.1 81 44.4
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 8.0e-08 64.3 89 38.2
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 8.0e-08 64.3 83 41.0
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 8.0e-08 64.3 83 41.0
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.0e-07 63.9 92 38.0
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 1.0e-07 63.9 83 34.9
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.0e-07 63.9 91 34.1
unitig_899.g14722 Utricularia gibba HOM05D012928 ORTHO05D003355 1.0e-07 63.9 52 48.1
Zm00001eb079300 Zea mays HOM05D028546 ORTHO05D030325 1.0e-07 63.9 87 39.1
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.4e-07 63.5 82 39.0
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 1.8e-07 63.2 81 34.6
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.8e-07 63.2 1363 21.1
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.8e-07 63.2 72 41.7
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.3e-07 62.8 77 40.3
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 2.3e-07 62.8 84 39.3
PSO478G3985 Papaver somniferum HOM05D040514 ORTHO05D003355 2.3e-07 62.8 71 42.3
Aa31sc46G40 Aethionema arabicum HOM05D005863 ORTHO05D003355 6.8e-07 61.2 81 34.6
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 6.8e-07 61.2 83 34.9
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 6.8e-07 61.2 80 37.5
Rhsim10G0199400 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.2e-06 60.5 61 41.0
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 1.5e-06 60.1 81 35.8
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 2.0e-06 59.7 112 28.6
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 2.0e-06 59.7 81 38.3
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 2.0e-06 59.7 72 37.5
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 2.0e-06 59.7 72 37.5
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 2.6e-06 59.3 82 32.9
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 2.6e-06 59.3 72 37.5
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 2.6e-06 59.3 81 38.3
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 2.6e-06 59.3 80 36.2
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 2.6e-06 59.3 79 38.0
Rhsim10G0199200 Rhododendron simsii HOM05D005863 ORTHO05D003355 5.7e-06 58.2 61 37.7
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 9.8e-06 57.4 50 42.0
Hma1.2p1_0815F.1_g222840 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 9.8e-06 57.4 306 28.1


User provided reference genes

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