Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 8.3e-188 660.2 335 100.0
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 4.3e-176 621.3 335 94.9
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 2.1e-146 522.7 337 80.7
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 2.1e-146 522.7 337 81.0
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 3.1e-142 508.8 337 79.5
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 1.5e-136 490.0 337 76.6
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 1.3e-79 300.8 352 48.9
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 5.2e-65 252.3 345 42.6
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 1.1e-62 244.6 356 43.3
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 2.4e-62 243.4 358 43.0
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 3.2e-62 243.0 339 44.0
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 9.2e-62 241.5 327 43.1
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 9.2e-62 241.5 332 42.8
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 3.0e-60 236.5 337 40.9
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 5.1e-60 235.7 339 45.4
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 2.4e-57 226.9 376 39.6
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 3.4e-56 223.0 312 45.8
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 9.9e-56 221.5 328 45.1
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 1.3e-55 221.1 328 43.3
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 2.4e-54 216.9 329 44.4
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 1.2e-53 214.5 331 42.6
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 1.3e-52 211.1 329 41.3
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 6.6e-52 208.8 329 41.3
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 6.6e-52 208.8 329 41.0
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 1.5e-51 207.6 329 40.1
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 4.3e-51 206.1 255 45.9
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 9.0e-49 198.4 327 40.1
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 1.3e-47 194.5 328 40.2
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 1.1e-46 191.4 324 40.4
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 2.4e-46 190.3 334 37.1
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 3.2e-46 189.9 341 38.4
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 7.1e-46 188.7 329 38.3
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 2.1e-45 187.2 335 39.1
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 2.1e-45 187.2 314 37.3
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 3.5e-45 186.4 335 39.1
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 7.9e-45 185.3 335 38.2
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 2.3e-44 183.7 328 40.5
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 6.7e-44 182.2 362 34.8
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 6.7e-44 182.2 321 39.6
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 3.3e-43 179.9 331 38.7
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 4.3e-43 179.5 337 38.3
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 4.3e-43 179.5 337 38.3
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 5.6e-43 179.1 335 38.5
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 9.6e-43 178.3 322 38.2
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 1.6e-42 177.6 324 37.3
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 2.1e-42 177.2 345 36.8
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 8.1e-42 175.3 326 35.6
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 9.0e-41 171.8 335 35.2
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 2.0e-40 170.6 324 36.4
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.0e-40 170.6 321 35.8
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 3.4e-40 169.9 356 33.7
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 7.6e-40 168.7 324 36.1
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 9.9e-40 168.3 327 37.6
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 2.2e-39 167.2 324 35.8
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.4e-38 163.7 324 34.6
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 9.3e-38 161.8 320 35.9
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 1.2e-37 161.4 322 36.6
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.2e-37 161.4 327 34.9
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 2.7e-37 160.2 324 38.0
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 5.1e-36 156.0 329 33.7
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 1.9e-35 154.1 323 33.4
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 4.3e-35 152.9 323 35.9
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 1.5e-32 144.4 307 37.5
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 4.5e-32 142.9 355 30.1
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 1.3e-31 141.4 294 38.1
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 3.8e-31 139.8 293 36.9
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 6.5e-31 139.0 317 36.0
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 1.1e-30 138.3 117 61.5
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 2.5e-30 137.1 334 32.3
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 7.9e-29 132.1 326 31.9
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 1.0e-28 131.7 256 38.3
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 3.3e-27 126.7 160 46.9
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 6.9e-25 119.0 103 63.1
Lj7A603G61 Lonicera japonica HOM05D006554 ORTHO05D008778 2.2e-23 114.0 180 41.1
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 1.4e-22 111.3 102 59.8
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 1.2e-21 108.2 384 27.3
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 5.1e-20 102.8 331 26.0
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 1.3e-18 98.2 123 40.7
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 1.3e-18 98.2 123 40.7
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 2.8e-18 97.1 125 40.8
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 2.8e-18 97.1 331 24.8
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 3.7e-18 96.7 331 26.3
Ca_06565_v3 Cicer arietinum L. HOM05D006554 ORTHO05D008778 3.7e-18 96.7 155 41.9
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 4.8e-18 96.3 125 40.8
DCAR_002966 Daucus carota HOM05D006554 ORTHO05D008778 4.8e-18 96.3 235 30.2
Atru.chr6.2450 Acer truncatum HOM05D006554 ORTHO05D008778 6.3e-18 95.9 162 40.7
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 8.2e-18 95.5 125 41.6
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 2.4e-17 94.0 129 40.3
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 4.1e-17 93.2 127 40.2
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 1.2e-16 91.7 331 26.3
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 2.6e-16 90.5 210 31.0
VMungo1383G3169 Vigna mungo HOM05D006554 ORTHO05D008778 2.6e-16 90.5 168 37.5
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 7.7e-16 89.0 329 23.1
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 7.7e-16 89.0 268 30.6
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 3.8e-15 86.7 209 30.6
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 3.8e-15 86.7 120 36.7
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 3.8e-15 86.7 121 37.2
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 5.0e-15 86.3 133 40.6
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 2.5e-14 84.0 215 30.2
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 4.2e-14 83.2 182 31.9
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 5.5e-14 82.8 71 57.7
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 7.2e-14 82.4 97 47.4
COL.COLO4_29198 Corchorus olitorius HOM05D006554 ORTHO05D008778 1.2e-13 81.6 232 29.7
FAN09G3965 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.4e-12 78.2 146 37.0
PSO210G7616 Papaver somniferum HOM05D006554 ORTHO05D008778 1.4e-12 78.2 120 40.8
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 1.4e-12 78.2 130 39.2
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 3.0e-12 77.0 177 33.3
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 3.9e-12 76.6 254 29.9
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 8.8e-12 75.5 325 25.8
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 1.5e-11 74.7 177 32.8
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 2.0e-11 74.3 137 37.2
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 7.4e-11 72.4 177 31.6
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 3.7e-10 70.1 177 30.5
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 6.3e-10 69.3 180 31.1
CDE09G1186 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 1.4e-09 68.2 148 32.4
Cpa.g.sc130.62 Carica papaya HOM05D006554 ORTHO05D008778 3.1e-09 67.0 115 40.0
Sc03g0007220 Simmondsia chinensis HOM05D006554 ORTHO05D008778 9.1e-09 65.5 301 26.9
CBR_g49972 Chara braunii HOM05D000336 ORTHO05D002705 1.3e-07 61.6 108 32.4
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.7e-07 61.2 62 51.6
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 2.2e-07 60.8 86 37.2
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 3.8e-07 60.1 62 51.6
SalBow3G1252 Salvia bowleyana HOM05D000336 ORTHO05D002705 1.1e-06 58.5 97 34.0
Pp3c22_7000 Physcomitrium patens HOM05D000336 ORTHO05D002705 2.5e-06 57.4 96 35.4
Gohir.D10G116100 Gossypium hirsutum HOM05D006554 ORTHO05D008778 3.2e-06 57.0 110 37.3
Sc05g0003330 Simmondsia chinensis HOM05D000336 ORTHO05D002705 4.2e-06 56.6 110 31.8
MSTRG.4151 Avicennia marina HOM05D000336 ORTHO05D002705 5.5e-06 56.2 171 25.7
Eucgr.F01485 Eucalyptus grandis HOM05D006554 ORTHO05D008778 5.5e-06 56.2 78 41.0
Potri.010G219200 Populus trichocarpa HOM05D000336 ORTHO05D002705 5.5e-06 56.2 119 31.9
Sopen09g009860 Solanum pennellii HOM05D000336 ORTHO05D002705 9.4e-06 55.5 97 30.9


User provided reference genes

Program Settings