Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000040g0390 Nicotiana tabacum HOM05D007131 ORTHO05D009026 2.8e-120 435.3 218 100.0
Nitab4.5_0001471g0060 Nicotiana tabacum HOM05D007131 ORTHO05D009026 9.5e-108 393.7 206 96.1
Peaxi162Scf01069g00214 Petunia axillaris HOM05D007131 ORTHO05D009026 4.2e-71 271.9 206 71.4
PGSC0003DMG400020651 Solanum tuberosum HOM05D007131 ORTHO05D009026 1.9e-68 263.1 203 68.5
CAN.G181.37 Capsicum annuum HOM05D007131 ORTHO05D009026 2.5e-68 262.7 206 67.5
Actinidia23782 Actinidia chinensis HOM05D007131 ORTHO05D009026 1.3e-67 260.4 200 67.0
Migut.N00650 Erythranthe guttata HOM05D007131 ORTHO05D009026 2.1e-67 259.6 205 67.3
Actinidia09448 Actinidia chinensis HOM05D007131 ORTHO05D009026 3.6e-67 258.8 200 66.5
Solyc06g007590.3 Solanum lycopersicum HOM05D007131 ORTHO05D009026 4.8e-67 258.5 203 67.0
Dinv22999 Davidia involucrata HOM05D007131 ORTHO05D009026 1.8e-66 256.5 204 67.6
MD10G1154300 Malus domestica HOM05D007131 ORTHO05D009026 2.4e-66 256.1 206 65.0
Hma1.2p1_1492F.1_g286770 Hydrangea macrophylla HOM05D007131 ORTHO05D009026 9.0e-66 254.2 213 66.2
FAN15G1265 Fragaria x ananassa HOM05D007131 ORTHO05D009026 7.6e-65 251.1 211 62.6
MD05G1165000 Malus domestica HOM05D007131 ORTHO05D009026 2.2e-64 249.6 206 63.1
RcHm_v2.0_Chr6g0283441 Rosa chinensis HOM05D007131 ORTHO05D009026 2.2e-64 249.6 202 64.4
FvH4_2g18050 Fragaria vesca HOM05D007131 ORTHO05D009026 2.9e-64 249.2 204 62.7
Prupe.8G193200 Prunus persica HOM05D007131 ORTHO05D009026 2.9e-64 249.2 207 63.3
Cfa010368 Carpinus fangiana HOM05D007131 ORTHO05D009026 1.9e-63 246.5 201 63.7
SGA_v2.0_scaffold77G25283 Striga asiatica HOM05D007131 ORTHO05D009026 7.1e-63 244.6 206 63.1
CiPaw.14G041500 Carya illinoinensis HOM05D007131 ORTHO05D009026 9.3e-63 244.2 212 62.7
CANSAT01G0405 Cannabis sativa HOM05D007131 ORTHO05D009026 4.6e-62 241.9 206 61.7
Haze_03320 Corylus avellana HOM05D007131 ORTHO05D009026 1.3e-61 240.4 215 60.5
Rhsim01G0249500 Rhododendron simsii HOM05D007131 ORTHO05D009026 1.8e-61 240.0 207 61.4
Ciclev10032761m.g Citrus clementina HOM05D007131 ORTHO05D009026 2.3e-61 239.6 204 62.7
MSTRG.12759 Avicennia marina HOM05D007131 ORTHO05D009026 3.9e-61 238.8 199 61.3
AL8G21510 Arabidopsis lyrata HOM05D007131 ORTHO05D009026 6.7e-61 238.0 189 64.0
THA.LOC104802654 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 1.1e-60 237.3 192 65.1
Thecc.01G214300 Theobroma cacao HOM05D007131 ORTHO05D009026 1.9e-60 236.5 199 62.8
Duzib138G1926 Durio zibethinus HOM05D007131 ORTHO05D009026 2.5e-60 236.1 200 62.0
ECA247G2839 Erigeron canadensis HOM05D004243 ORTHO05D005018 4.3e-60 235.3 201 59.7
HanXRQChr08g0231751 Helianthus annuus HOM05D007131 ORTHO05D009026 5.6e-60 235.0 205 60.5
MELO3C015773.2 Cucumis melo HOM05D007131 ORTHO05D009026 9.6e-60 234.2 207 60.9
Aqoxy2G04077 Aquilegia oxysepala HOM05D007131 ORTHO05D009026 2.1e-59 233.0 200 59.0
arahy.Tifrunner.gnm1.ann1.4977NQ Arachis hypogaea HOM05D007131 ORTHO05D009026 2.1e-59 233.0 197 63.5
Duzib211G0587 Durio zibethinus HOM05D007131 ORTHO05D009026 2.8e-59 232.6 200 62.0
Gorai.007G158200 Gossypium raimondii HOM05D007131 ORTHO05D009026 3.6e-59 232.3 194 62.9
TAR362G0782 Trochodendron aralioides HOM05D007131 ORTHO05D009026 3.6e-59 232.3 193 62.7
DCAR_004756 Daucus carota HOM05D007131 ORTHO05D009026 4.8e-59 231.9 208 58.7
Carub.0008s0817 Capsella rubella HOM05D007131 ORTHO05D009026 8.1e-59 231.1 188 63.3
vmacro14706 Vaccinium macrocarpon HOM05D007131 ORTHO05D009026 1.1e-58 230.7 224 55.4
BolC7t44444H Brassica oleracea HOM05D007131 ORTHO05D009026 1.4e-58 230.3 183 65.6
Medtr7g053220 Medicago truncatula HOM05D007131 ORTHO05D009026 1.4e-58 230.3 192 59.9
Sed0006902 Sechium edule HOM05D007131 ORTHO05D009026 1.4e-58 230.3 207 60.9
ClCG09G007600 Citrullus lanatus HOM05D007131 ORTHO05D009026 1.8e-58 229.9 207 59.4
EL10Ac7g17974 Beta vulgaris HOM05D007131 ORTHO05D009026 2.4e-58 229.6 203 60.6
A06p39100 Brassica napus HOM05D007131 ORTHO05D009026 2.4e-58 229.6 182 64.3
unitig_37.g12881 Utricularia gibba HOM05D007131 ORTHO05D009026 2.4e-58 229.6 196 59.2
BcaC04g23770 Brassica carinata HOM05D007131 ORTHO05D009026 4.0e-58 228.8 185 62.7
C09p04870 Brassica napus HOM05D007131 ORTHO05D009026 4.0e-58 228.8 185 62.7
BcaB04g19580 Brassica carinata HOM05D007131 ORTHO05D009026 5.3e-58 228.4 185 63.2
BcaC06g30783 Brassica carinata HOM05D007131 ORTHO05D009026 5.3e-58 228.4 180 64.4
Sp2g18910 Schrenkiella parvula HOM05D007131 ORTHO05D009026 5.3e-58 228.4 182 63.2
CsaV3_7G027510 Cucumis sativus L. HOM05D007131 ORTHO05D009026 6.9e-58 228.0 207 58.9
QL09p048363 Quercus lobata HOM05D007131 ORTHO05D009026 6.9e-58 228.0 198 60.6
THA.LOC104818990 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 6.9e-58 228.0 185 64.3
Eucgr.H00746 Eucalyptus grandis HOM05D007131 ORTHO05D009026 9.0e-58 227.6 214 55.1
Gohir.A11G141300 Gossypium hirsutum HOM05D007131 ORTHO05D009026 9.0e-58 227.6 194 61.3
PSO675G2392 Papaver somniferum HOM05D007131 ORTHO05D009026 1.5e-57 226.9 201 57.7
C07p39240 Brassica napus HOM05D007131 ORTHO05D009026 3.4e-57 225.7 183 63.4
Potri.002G248800 Populus trichocarpa HOM05D007131 ORTHO05D009026 3.4e-57 225.7 193 60.1
Lalb_Chr13g0291041 Lupinus albus HOM05D007131 ORTHO05D009026 7.6e-57 224.6 192 59.9
Sabra02G0189500 Salix brachista HOM05D007131 ORTHO05D009026 9.9e-57 224.2 194 58.8
Lj1g0012821 Lotus japonicus HOM05D007131 ORTHO05D009026 2.9e-56 222.6 206 57.3
Glyma.08G345600 Glycine max HOM05D007131 ORTHO05D009026 6.4e-56 221.5 200 59.5
PSO017G7069 Papaver somniferum HOM05D007131 ORTHO05D009026 8.4e-56 221.1 198 59.6
A09p04560 Brassica napus HOM05D007131 ORTHO05D009026 2.4e-55 219.5 198 59.1
BolC9t53415H Brassica oleracea HOM05D007131 ORTHO05D009026 2.4e-55 219.5 198 58.6
BraA09t36091Z Brassica rapa HOM05D007131 ORTHO05D009026 2.4e-55 219.5 198 59.1
Sc24g0003400 Simmondsia chinensis HOM05D007131 ORTHO05D009026 4.2e-55 218.8 208 57.2
Cc01_g16360 Coffea canephora HOM05D007131 ORTHO05D009026 5.5e-55 218.4 154 70.8
Lsat_1_v5_gn_9_17941 Lactuca sativa HOM05D007131 ORTHO05D009026 9.3e-55 217.6 174 62.1
TPR.G26850 Trifolium pratense HOM05D007131 ORTHO05D009026 4.6e-54 215.3 196 57.1
Psat3g150760 Pisum sativum HOM05D007131 ORTHO05D009026 1.3e-53 213.8 202 57.9
Oeu064654.1 Olea europaea HOM05D007131 ORTHO05D009026 1.3e-51 207.2 163 63.2
Aa31sc517G10 Aethionema arabicum HOM05D007131 ORTHO05D009026 1.4e-50 203.8 239 49.0
Dinv28824 Davidia involucrata HOM05D007131 ORTHO05D009026 2.0e-49 199.9 134 73.9
ATR1149G002 Amborella trichopoda HOM05D007131 ORTHO05D009026 5.8e-49 198.4 197 53.8
FAN27G0491 Fragaria x ananassa HOM05D007131 ORTHO05D009026 1.3e-48 197.2 229 51.1
Os12g0233300 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 1.3e-48 197.2 205 50.7
HPP92_007612 Vanilla planifolia HOM05D007131 ORTHO05D009026 1.7e-48 196.8 199 51.8
Atru.chr6.1589 Acer truncatum HOM05D007131 ORTHO05D009026 4.9e-48 195.3 198 54.0
FAN24G0325 Fragaria x ananassa HOM05D007131 ORTHO05D009026 1.6e-46 190.3 230 49.6
TWI36G0143 Tripterygium wilfordii HOM05D007131 ORTHO05D009026 6.7e-45 184.9 170 57.1
Nn1g09828 Nelumbo nucifera HOM05D007131 ORTHO05D009026 1.9e-44 183.3 141 64.5
CDE08G0780 Ceratophyllum demersum HOM05D007131 ORTHO05D009026 3.7e-43 179.1 162 58.6
Manes.12G051500 Manihot esculenta HOM05D007131 ORTHO05D009026 1.4e-42 177.2 136 66.9
Sopen06g002490 Solanum pennellii HOM05D007131 ORTHO05D009026 2.4e-42 176.4 122 75.4
AT5G48545 Arabidopsis thaliana HOM05D007131 ORTHO05D009026 6.9e-42 174.9 143 62.9
VMungo1383G1151 Vigna mungo HOM05D007131 ORTHO05D009026 3.4e-41 172.6 196 50.5
Pp3c1_40870 Physcomitrium patens HOM05D007131 ORTHO05D009026 3.8e-40 169.1 138 59.4
SMO201G0137 Selaginella moellendorffii HOM05D007131 ORTHO05D009026 6.5e-40 168.3 121 63.6
AagrBONN_evm.TU.Sc2ySwM_368.401 Anthoceros agrestis HOM05D007131 ORTHO05D009026 1.9e-39 166.8 181 48.6
Gohir.D11G147600 Gossypium hirsutum HOM05D007131 ORTHO05D009026 9.3e-39 164.5 139 63.3
CBR_g41484 Chara braunii HOM05D007131 ORTHO05D009026 2.1e-38 163.3 136 58.8
CBR_g28074 Chara braunii HOM05D007131 ORTHO05D009026 2.7e-38 162.9 138 56.5
SalBow3G2460 Salvia bowleyana HOM05D007131 ORTHO05D009026 1.3e-35 154.1 281 35.9
AUR62022148 Chenopodium quinoa HOM05D007131 ORTHO05D009026 1.4e-34 150.6 280 37.9
Phvul.008G134700 Phaseolus vulgaris HOM05D007131 ORTHO05D009026 1.8e-34 150.2 124 62.9
GSVIVG01002500001 Vitis vinifera HOM05D007131 ORTHO05D009026 2.0e-33 146.7 103 71.8
Thhalv10005043m.g Eutrema salsugineum HOM05D007131 ORTHO05D009026 3.2e-31 139.4 123 58.5
Lj2A1119T34 Lonicera japonica HOM05D007131 ORTHO05D009026 2.0e-28 130.2 117 61.5
CARHR183470 Cardamine hirsuta HOM05D007131 ORTHO05D009026 2.5e-23 113.2 104 55.8
arahy.Tifrunner.gnm1.ann1.YI3R6M Arachis hypogaea HOM05D007131 ORTHO05D009026 7.2e-23 111.7 169 44.4
AUR62001177 Chenopodium quinoa HOM05D007131 ORTHO05D009026 5.2e-21 105.5 210 37.6
CiPaw.14G045900 Carya illinoinensis HOM05D007131 ORTHO05D009026 2.6e-20 103.2 97 60.8
MCO06G116 Micromonas commoda HOM05D007131 ORTHO05D009026 8.2e-19 98.2 106 42.5
QL09p048378 Quercus lobata HOM05D007131 ORTHO05D009026 1.4e-18 97.4 69 66.7
SEGI_25619 Sequoiadendron giganteum HOM05D007131 ORTHO05D009026 2.6e-17 93.2 86 55.8
Cpa.g.sc8.95 Carica papaya HOM05D007131 ORTHO05D009026 2.7e-14 83.2 85 52.9
QL09p048788 Quercus lobata HOM05D002652 ORTHO05D002739 4.4e-12 75.9 115 40.9
Os11g0295000 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 8.2e-11 71.6 62 58.1
PSO675G0625 Papaver somniferum HOM05D002397 ORTHO05D002667 1.6e-09 67.4 117 31.6
PSO017G1677 Papaver somniferum HOM05D002397 ORTHO05D002667 2.7e-09 66.6 117 31.6
Eucgr.K01707 Eucalyptus grandis HOM05D002397 ORTHO05D002667 8.5e-08 61.6 145 31.7
Sabra15G0139200 Salix brachista HOM05D002397 ORTHO05D002667 8.5e-08 61.6 142 30.3
CANSAT35G0509 Cannabis sativa HOM05D002397 ORTHO05D002667 1.1e-07 61.2 131 32.8
CBR_g50359 Chara braunii HOM05D002397 ORTHO05D002667 1.1e-07 61.2 105 35.2
Nitab4.5_0003217g0020 Nicotiana tabacum HOM05D002397 ORTHO05D002667 1.1e-07 61.2 164 29.3
Mapoly0066s0117 Marchantia polymorpha HOM05D002397 ORTHO05D002667 1.9e-07 60.5 151 31.8
Sc19g0007740 Simmondsia chinensis HOM05D002397 ORTHO05D002667 2.5e-07 60.1 148 30.4
Thecc.02G008600 Theobroma cacao HOM05D002397 ORTHO05D002667 2.5e-07 60.1 111 34.2
PGR142G3425 Punica granatum HOM05D002397 ORTHO05D002667 3.2e-07 59.7 153 29.4
CAN.G128.127 Capsicum annuum HOM05D002397 ORTHO05D002667 4.2e-07 59.3 157 28.7
Duzib132G0505 Durio zibethinus HOM05D002397 ORTHO05D002667 4.2e-07 59.3 111 34.2
COL.COLO4_17651 Corchorus olitorius HOM05D002397 ORTHO05D002667 5.5e-07 58.9 115 33.9
Glyma.19G123100 Glycine max HOM05D002397 ORTHO05D002667 5.5e-07 58.9 113 31.9
THA.LOC104812704 Tarenaya hassleriana HOM05D002397 ORTHO05D002667 5.5e-07 58.9 101 34.7
Carub.0001s2956 Capsella rubella HOM05D002397 ORTHO05D002667 7.2e-07 58.5 102 36.3
Ciclev10013010m.g Citrus clementina HOM05D002397 ORTHO05D002667 7.2e-07 58.5 147 29.9
Manes.16G056900 Manihot esculenta HOM05D002397 ORTHO05D002667 7.2e-07 58.5 169 27.8
Gohir.D13G000600 Gossypium hirsutum HOM05D002397 ORTHO05D002667 9.4e-07 58.2 152 30.9
Gorai.013G000500 Gossypium raimondii HOM05D002397 ORTHO05D002667 9.4e-07 58.2 152 30.9
Nn7g38244 Nelumbo nucifera HOM05D002397 ORTHO05D002667 9.4e-07 58.2 101 33.7
Potri.015G124700 Populus trichocarpa HOM05D002397 ORTHO05D002667 9.4e-07 58.2 137 29.9
RcHm_v2.0_Chr3g0494981 Rosa chinensis HOM05D002397 ORTHO05D002667 9.4e-07 58.2 147 31.3
AL1G49390 Arabidopsis lyrata HOM05D002397 ORTHO05D002667 1.2e-06 57.8 113 31.9
Duzib052G0791 Durio zibethinus HOM05D002397 ORTHO05D002667 1.2e-06 57.8 101 34.7
Migut.J01593 Erythranthe guttata HOM05D002397 ORTHO05D002667 1.2e-06 57.8 151 31.8
Thhalv10009998m.g Eutrema salsugineum HOM05D002397 ORTHO05D002667 1.2e-06 57.8 101 34.7
FvH4_1g29350 Fragaria vesca HOM05D002397 ORTHO05D002667 1.2e-06 57.8 147 29.3
MD05G1250300 Malus domestica HOM05D002397 ORTHO05D002667 1.2e-06 57.8 111 33.3
Oeu034906.1 Olea europaea HOM05D002397 ORTHO05D002667 1.2e-06 57.8 153 29.4
TAR629G2980 Trochodendron aralioides HOM05D002397 ORTHO05D002667 1.2e-06 57.8 111 32.4
Cre06.g273000 Chlamydomonas reinhardtii HOM05D002397 ORTHO05D002667 1.6e-06 57.4 113 32.7
Gohir.A12G046800 Gossypium hirsutum HOM05D002397 ORTHO05D002667 1.6e-06 57.4 173 26.6
FAN26G1705 Fragaria x ananassa HOM05D002397 ORTHO05D002667 2.1e-06 57.0 147 29.3
FAN28G1421 Fragaria x ananassa HOM05D002397 ORTHO05D002667 2.1e-06 57.0 147 29.3
Lj2A349T11 Lonicera japonica HOM05D002397 ORTHO05D002667 2.1e-06 57.0 106 32.1
HPP92_004188 Vanilla planifolia HOM05D002397 ORTHO05D002667 2.1e-06 57.0 118 30.5
CSS0046926 Camellia sinensis var. sinensis HOM05D002397 ORTHO05D002667 2.7e-06 56.6 167 26.9
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 2.7e-06 56.6 81 35.8
Cc00_g11370 Coffea canephora HOM05D002397 ORTHO05D002667 2.7e-06 56.6 102 35.3
TPR.G33943 Trifolium pratense HOM05D002397 ORTHO05D002667 2.7e-06 56.6 144 29.2
DCAR_001310 Daucus carota HOM05D002397 ORTHO05D009673 3.6e-06 56.2 106 31.1
Dinv25920 Davidia involucrata HOM05D002397 ORTHO05D002667 3.6e-06 56.2 121 28.9
Gorai.008G048400 Gossypium raimondii HOM05D002397 ORTHO05D002667 3.6e-06 56.2 173 25.4
Prupe.4G113300 Prunus persica HOM05D002397 ORTHO05D002667 3.6e-06 56.2 111 33.3
Solyc02g068700.3 Solanum lycopersicum HOM05D002397 ORTHO05D002667 3.6e-06 56.2 116 31.0
Sopen02g017870 Solanum pennellii HOM05D002397 ORTHO05D002667 3.6e-06 56.2 116 31.0
SGA_v2.0_scaffold66G22344 Striga asiatica HOM05D002397 ORTHO05D002667 3.6e-06 56.2 147 31.3
HanXRQChr14g0447211 Helianthus annuus HOM05D002397 ORTHO05D002667 4.7e-06 55.8 113 31.0
PGR004G1811 Punica granatum HOM05D002397 ORTHO05D002667 4.7e-06 55.8 166 28.3
Solyc10g081310.2 Solanum lycopersicum HOM05D002397 ORTHO05D002667 4.7e-06 55.8 157 29.3
Sopen10g031810 Solanum pennellii HOM05D002397 ORTHO05D002667 4.7e-06 55.8 157 29.3
ECA238G1645 Erigeron canadensis HOM05D002397 ORTHO05D002667 6.1e-06 55.5 113 31.0
GSVIVG01029893001 Vitis vinifera HOM05D002397 ORTHO05D002667 6.1e-06 55.5 112 33.9
CAN.G149.10 Capsicum annuum HOM05D002397 ORTHO05D002667 8.0e-06 55.1 116 30.2
Gohir.A13G001100 Gossypium hirsutum HOM05D002397 ORTHO05D002667 8.0e-06 55.1 113 32.7
Gohir.D12G045800 Gossypium hirsutum HOM05D002397 ORTHO05D002667 8.0e-06 55.1 173 24.9
SEGI_32624 Sequoiadendron giganteum HOM05D002397 ORTHO05D002667 8.0e-06 55.1 101 31.7
GSVIVG01012105001 Vitis vinifera HOM05D002397 ORTHO05D002667 8.0e-06 55.1 164 28.7


User provided reference genes

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