Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000038g0080 Nicotiana tabacum HOM05D007255 ORTHO05D009052 1.1e-139 500.0 249 100.0
Nitab4.5_0005972g0030 Nicotiana tabacum HOM05D007255 ORTHO05D009052 2.6e-138 495.4 249 98.8
Sopen09g020080 Solanum pennellii HOM05D007255 ORTHO05D009052 9.4e-120 433.7 244 89.8
Solyc09g058990.3 Solanum lycopersicum HOM05D007255 ORTHO05D009052 1.0e-118 430.3 244 89.3
Peaxi162Scf00335g01514 Petunia axillaris HOM05D007255 ORTHO05D009052 4.0e-94 348.6 244 75.0
Dinv10428 Davidia involucrata HOM05D007255 ORTHO05D009052 1.2e-93 347.1 240 72.5
MSTRG.18490 Avicennia marina HOM05D007255 ORTHO05D009052 1.2e-90 337.0 244 73.4
Oeu064665.2 Olea europaea HOM05D007255 ORTHO05D009052 7.8e-90 334.3 259 68.3
Migut.D00726 Erythranthe guttata HOM05D007255 ORTHO05D009052 1.9e-88 329.7 244 69.3
Actinidia34549 Actinidia chinensis HOM05D007255 ORTHO05D009052 9.5e-88 327.4 238 70.2
Hma1.2p1_0161F.1_g071360 Hydrangea macrophylla HOM05D007255 ORTHO05D009052 9.5e-88 327.4 240 70.4
SalBow6G0858 Salvia bowleyana HOM05D007255 ORTHO05D009052 1.6e-87 326.6 245 68.6
SGA_v2.0_scaffold29G12102 Striga asiatica HOM05D007255 ORTHO05D009052 2.8e-87 325.9 243 68.3
Cc01_g16200 Coffea canephora HOM05D007255 ORTHO05D009052 2.6e-85 319.3 243 69.1
Thecc.01G211700 Theobroma cacao HOM05D007255 ORTHO05D009052 2.2e-84 316.2 238 67.6
Rhsim01G0248900 Rhododendron simsii HOM05D007255 ORTHO05D009052 4.9e-84 315.1 244 68.9
Sabra02G0190600 Salix brachista HOM05D007255 ORTHO05D009052 2.4e-83 312.8 236 67.8
CiPaw.13G054800 Carya illinoinensis HOM05D007255 ORTHO05D009052 2.1e-82 309.7 240 66.2
Eucgr.K02090 Eucalyptus grandis HOM05D007255 ORTHO05D009052 6.0e-82 308.1 247 66.0
Potri.002G250500 Populus trichocarpa HOM05D007255 ORTHO05D009052 1.0e-81 307.4 236 65.7
Duzib211G0668 Durio zibethinus HOM05D007255 ORTHO05D009052 1.7e-81 306.6 238 68.5
QL09p046138 Quercus lobata HOM05D007255 ORTHO05D009052 8.6e-81 304.3 240 62.9
Lsat_1_v5_gn_5_178401 Lactuca sativa HOM05D007255 ORTHO05D009052 1.5e-80 303.5 246 64.6
Cpa.g.sc8.78 Carica papaya HOM05D007255 ORTHO05D009052 2.5e-80 302.8 236 66.9
Prupe.8G191100 Prunus persica HOM05D007255 ORTHO05D009052 7.3e-80 301.2 242 64.5
FvH4_2g17870 Fragaria vesca HOM05D007255 ORTHO05D009052 9.5e-80 300.8 240 63.3
FAN15G3515 Fragaria x ananassa HOM05D007255 ORTHO05D009052 1.6e-79 300.1 240 62.9
FAN27G1291 Fragaria x ananassa HOM05D007255 ORTHO05D009052 1.6e-79 300.1 240 62.9
RcHm_v2.0_Chr6g0282891 Rosa chinensis HOM05D007255 ORTHO05D009052 1.6e-79 300.1 240 62.9
Hund02793 Selenicereus undatus HOM05D007255 ORTHO05D009052 1.6e-79 300.1 242 67.4
Ca_23187_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 2.8e-79 299.3 241 66.0
Ca_30803_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 2.8e-79 299.3 241 66.0
TAR365G1235 Trochodendron aralioides HOM05D007255 ORTHO05D009052 2.8e-79 299.3 243 65.4
Sc05g0001760 Simmondsia chinensis HOM05D007255 ORTHO05D009052 3.6e-79 298.9 243 62.6
COL.COLO4_28926 Corchorus olitorius HOM05D007255 ORTHO05D009052 4.7e-79 298.5 242 65.3
FAN24G0557 Fragaria x ananassa HOM05D007255 ORTHO05D009052 6.2e-79 298.1 240 62.9
Aqoxy5G00040 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 8.1e-79 297.7 242 64.9
PGR044G0433 Punica granatum HOM05D007255 ORTHO05D009052 1.4e-78 297.0 242 64.9
ECA248G0740 Erigeron canadensis HOM05D007255 ORTHO05D009052 4.0e-78 295.4 243 66.3
Manes.13G054000 Manihot esculenta HOM05D007255 ORTHO05D009052 4.0e-78 295.4 236 63.1
Gorai.007G159200 Gossypium raimondii HOM05D007255 ORTHO05D009052 5.2e-78 295.0 239 65.3
MD10G1152600 Malus domestica HOM05D007255 ORTHO05D009052 6.8e-78 294.7 263 60.5
TPR.G15196 Trifolium pratense HOM05D007255 ORTHO05D009052 1.2e-77 293.9 240 63.8
Gohir.A11G142200 Gossypium hirsutum HOM05D007255 ORTHO05D009052 2.6e-77 292.7 239 64.9
Gohir.D11G148500 Gossypium hirsutum HOM05D007255 ORTHO05D009052 4.4e-77 292.0 239 64.9
Phvul.010G031200 Phaseolus vulgaris HOM05D007255 ORTHO05D009052 4.4e-77 292.0 240 67.1
THA.LOC104818995 Tarenaya hassleriana HOM05D007255 ORTHO05D009052 4.4e-77 292.0 239 64.0
vmacro14695 Vaccinium macrocarpon HOM05D007255 ORTHO05D009052 9.9e-77 290.8 246 65.9
arahy.Tifrunner.gnm1.ann1.TV22BE Arachis hypogaea HOM05D007255 ORTHO05D009052 1.3e-76 290.4 215 69.8
Ah.11g051090 Amaranthus hybridus HOM05D007255 ORTHO05D009052 1.7e-76 290.0 242 63.2
Glyma.03G089600 Glycine max HOM05D007255 ORTHO05D009052 1.1e-75 287.3 240 65.4
CANSAT01G0773 Cannabis sativa HOM05D007255 ORTHO05D009052 1.4e-75 287.0 239 62.8
TWI18G1029 Tripterygium wilfordii HOM05D007255 ORTHO05D009052 1.4e-75 287.0 240 66.2
Atru.chr6.3551 Acer truncatum HOM05D007255 ORTHO05D009052 1.9e-75 286.6 238 63.0
Thhalv10004862m.g Eutrema salsugineum HOM05D007255 ORTHO05D009052 1.9e-75 286.6 236 63.1
AT3G07440 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 2.4e-75 286.2 238 63.9
A06p39120 Brassica napus HOM05D007255 ORTHO05D009052 2.4e-75 286.2 238 63.0
C07p39220 Brassica napus HOM05D007255 ORTHO05D009052 2.4e-75 286.2 238 62.6
BolC7t44442H Brassica oleracea HOM05D007255 ORTHO05D009052 2.4e-75 286.2 238 62.6
Aa31LG5G18020 Aethionema arabicum HOM05D007255 ORTHO05D009052 3.2e-75 285.8 210 67.6
EL10Ac5g10635 Beta vulgaris HOM05D007255 ORTHO05D009052 3.2e-75 285.8 241 63.9
Medtr8g011480 Medicago truncatula HOM05D007255 ORTHO05D009052 4.1e-75 285.4 238 63.9
Lalb_Chr12g0210041 Lupinus albus HOM05D007255 ORTHO05D009052 5.4e-75 285.0 238 63.4
arahy.Tifrunner.gnm1.ann1.UDT0KZ Arachis hypogaea HOM05D007255 ORTHO05D009052 9.2e-75 284.3 208 70.7
Nn1g08274 Nelumbo nucifera HOM05D007255 ORTHO05D009052 9.2e-75 284.3 310 52.3
BraA06t26826Z Brassica rapa HOM05D007255 ORTHO05D009052 2.1e-74 283.1 238 62.6
CARHR082090 Cardamine hirsuta HOM05D007255 ORTHO05D009052 2.1e-74 283.1 238 62.6
AL3G18750 Arabidopsis lyrata HOM05D007255 ORTHO05D009052 4.6e-74 282.0 238 62.2
AUR62028710 Chenopodium quinoa HOM05D007255 ORTHO05D009052 7.8e-74 281.2 264 60.2
Carub.0003s0699 Capsella rubella HOM05D007255 ORTHO05D009052 1.0e-73 280.8 243 61.3
Sp2g18890 Schrenkiella parvula HOM05D007255 ORTHO05D009052 1.3e-73 280.4 237 62.4
Lj3g0001968 Lotus japonicus HOM05D007255 ORTHO05D009052 3.0e-73 279.3 253 61.3
BcaC06g30785 Brassica carinata HOM05D007255 ORTHO05D009052 3.9e-73 278.9 216 67.6
Ciclev10016497m.g Citrus clementina HOM05D007255 ORTHO05D009052 8.7e-73 277.7 237 61.2
unitig_62.g23864 Utricularia gibba HOM05D007255 ORTHO05D009052 5.6e-72 275.0 250 59.6
MELO3C012737.2 Cucumis melo HOM05D007255 ORTHO05D009052 2.4e-70 269.6 244 61.1
Sed0001908 Sechium edule HOM05D007255 ORTHO05D009052 4.0e-70 268.9 243 60.5
AT5G48530 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 3.4e-69 265.8 198 68.2
unitig_64.g29772 Utricularia gibba HOM05D007255 ORTHO05D009052 7.6e-69 264.6 233 59.7
CsaV3_7G026920 Cucumis sativus L. HOM05D007255 ORTHO05D009052 8.4e-68 261.2 242 59.9
PSO170G5614 Papaver somniferum HOM05D007255 ORTHO05D009052 1.1e-67 260.8 218 60.6
Nn1g03664 Nelumbo nucifera HOM05D007255 ORTHO05D009052 3.2e-67 259.2 240 58.3
PSO357G0536 Papaver somniferum HOM05D007255 ORTHO05D009052 5.4e-67 258.5 220 59.5
GSVIVG01006076001 Vitis vinifera HOM05D007255 ORTHO05D009052 7.1e-67 258.1 160 80.0
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 2.7e-66 256.1 274 54.0
CSS0043687 Camellia sinensis var. sinensis HOM05D007255 ORTHO05D009052 3.0e-65 252.7 160 81.2
Os02g0478500 Oryza sativa ssp. japonica HOM05D007255 ORTHO05D009052 1.9e-64 250.0 195 63.6
Zm00001eb241080 Zea mays HOM05D007255 ORTHO05D009052 4.3e-64 248.8 223 57.4
Haze_03304 Corylus avellana HOM05D007255 ORTHO05D009052 1.2e-61 240.7 170 70.0
ATR0491G001 Amborella trichopoda HOM05D007255 ORTHO05D009052 2.9e-60 236.1 153 73.2
Lj1A100G17 Lonicera japonica HOM05D007255 ORTHO05D009052 6.4e-60 235.0 180 68.3
Aqoxy2G00044 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 9.3e-59 231.1 180 65.0
DCAR_018628 Daucus carota HOM05D007255 ORTHO05D009052 1.6e-58 230.3 160 73.8
HanXRQChr01g0025051 Helianthus annuus HOM05D007255 ORTHO05D009052 2.1e-58 229.9 197 64.0
Actinidia23788 Actinidia chinensis HOM05D007255 ORTHO05D009052 6.4e-52 208.4 197 58.4
Glyma.16G083400 Glycine max HOM05D007255 ORTHO05D009052 1.2e-42 177.6 106 81.1
AUR62008128 Chenopodium quinoa HOM05D007255 ORTHO05D009052 1.8e-38 163.7 139 63.3
HPP92_024260 Vanilla planifolia HOM05D007255 ORTHO05D009052 8.5e-36 154.8 129 61.2
VMungo0331G1225 Vigna mungo HOM05D007255 ORTHO05D009052 6.7e-33 145.2 95 77.9
VMungo0331G0526 Vigna mungo HOM05D007255 ORTHO05D009052 2.2e-23 113.6 106 62.3
HPP92_024228 Vanilla planifolia HOM05D007255 ORTHO05D009052 6.3e-23 112.1 99 58.6
CDE04G1852 Ceratophyllum demersum HOM05D007255 ORTHO05D009052 1.8e-22 110.5 78 73.1
Prupe.8G191300 Prunus persica HOM05D007255 ORTHO05D009052 1.6e-18 97.4 93 52.7
SEGI_09952 Sequoiadendron giganteum HOM05D007255 ORTHO05D009052 2.1e-18 97.1 55 81.8
VMungo0251G0654 Vigna mungo HOM05D007255 ORTHO05D009052 1.1e-14 84.7 60 71.7
GSVIVG01006250001 Vitis vinifera HOM05D007255 ORTHO05D009052 1.0e-12 78.2 64 60.9
Psat0s4060g0280 Pisum sativum HOM05D007255 ORTHO05D009052 2.3e-09 67.0 75 52.0


User provided reference genes

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