Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 0.0e+00 1795.8 954 100.0
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 0.0e+00 1193.3 1024 69.0
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 0.0e+00 1114.8 1031 66.0
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 0.0e+00 1080.9 1002 64.7
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 4.3e-298 1028.1 994 63.8
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 1.5e-295 1019.6 1030 62.4
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 5.1e-206 722.2 682 66.0
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.5e-109 401.7 1127 33.5
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 8.6e-105 386.0 1079 33.7
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 5.2e-102 376.7 1033 34.5
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 1.5e-96 358.6 1132 33.3
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 9.9e-93 345.9 1051 33.3
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.4e-83 314.7 1049 31.7
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 5.5e-83 313.5 1085 32.0
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.6e-79 302.0 1202 28.7
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 2.4e-78 298.1 1124 29.3
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 9.0e-78 296.2 1061 30.4
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 4.9e-76 290.4 1069 30.3
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 4.9e-76 290.4 1061 29.6
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 1.2e-74 285.8 1075 30.3
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 2.7e-74 284.6 1226 29.1
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 3.0e-73 281.2 1032 29.6
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 5.1e-73 280.4 1223 29.2
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.5e-72 278.9 1157 29.6
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 9.6e-72 276.2 1051 30.4
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 9.6e-72 276.2 1237 28.3
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 9.6e-72 276.2 1071 30.5
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 6.3e-71 273.5 1022 31.0
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 6.3e-71 273.5 1131 29.9
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 3.1e-70 271.2 1154 29.1
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 4.1e-70 270.8 1237 28.0
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 5.3e-70 270.4 1053 31.1
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.6e-69 268.1 1051 30.3
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 3.4e-69 267.7 1110 28.2
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 7.6e-69 266.5 1093 29.8
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 7.6e-69 266.5 1093 29.8
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 2.2e-68 265.0 1141 29.9
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 5.0e-68 263.8 1132 29.1
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 3.9e-65 254.2 1213 27.9
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 6.7e-65 253.4 1127 29.7
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.5e-64 251.5 976 29.8
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 7.4e-64 250.0 984 30.1
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 9.7e-64 249.6 303 52.8
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 3.7e-63 247.7 1090 27.8
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 3.1e-62 244.6 1110 27.8
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 6.9e-62 243.4 1081 27.3
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 9.0e-62 243.0 965 31.0
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 2.0e-61 241.9 1316 28.0
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.3e-60 239.2 1276 27.3
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 3.8e-60 237.7 222 63.5
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 2.5e-59 235.0 1116 27.7
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 3.2e-59 234.6 1069 27.6
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 4.6e-58 230.7 1113 27.8
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 3.9e-57 227.6 1140 27.4
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 4.3e-56 224.2 943 28.8
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.8e-55 221.5 1029 27.1
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 8.2e-55 219.9 965 31.8
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 4.1e-54 217.6 979 28.8
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 1.0e-52 213.0 1150 29.1
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 1.3e-52 212.6 1013 27.6
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 6.5e-52 210.3 1003 27.7
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 1.1e-51 209.5 1034 27.5
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.2e-51 208.0 985 27.3
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 4.2e-51 207.6 1006 26.1
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 9.4e-51 206.5 997 27.0
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 1.6e-50 205.7 521 37.2
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 1.6e-50 205.7 659 33.8
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 2.1e-50 205.3 1097 27.2
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 7.9e-50 203.4 309 47.9
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 2.3e-49 201.8 1074 28.0
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.3e-49 201.8 311 46.3
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 3.9e-49 201.1 1003 28.0
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.1e-48 199.5 1100 26.9
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 7.4e-48 196.8 439 36.9
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 2.2e-47 195.3 623 32.3
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 3.7e-47 194.5 538 34.4
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 3.1e-46 191.4 645 33.0
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 2.6e-45 188.3 1023 28.3
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 4.5e-45 187.6 527 35.5
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 3.8e-44 184.5 977 27.1
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 7.2e-43 180.3 940 27.0
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 2.1e-42 178.7 258 46.1
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.6e-42 177.9 945 26.6
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 4.0e-41 174.5 348 39.7
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 4.8e-39 167.5 990 26.6
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 3.1e-38 164.9 993 26.6
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.5e-37 161.0 988 26.3
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 5.0e-36 157.5 642 28.8
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 6.1e-34 150.6 173 57.2
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 1.2e-32 146.4 951 26.1
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 1.5e-32 146.0 442 33.0
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 4.4e-32 144.4 261 43.3
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 2.8e-31 141.7 942 24.8
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 1.4e-30 139.4 1221 22.9
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 1.6e-29 136.0 320 35.0
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 3.2e-27 128.3 945 24.3
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 2.1e-26 125.6 120 57.5
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.3e-25 122.1 977 25.1
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.0e-25 121.3 980 24.3
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 4.0e-25 121.3 976 24.5
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 8.8e-25 120.2 148 50.7
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 2.0e-24 119.0 961 24.2
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 3.4e-24 118.2 131 51.9
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 1.7e-23 115.9 839 26.5
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.7e-23 115.9 937 24.2
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 4.1e-22 111.3 923 24.6
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 4.1e-22 111.3 968 25.6
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 7.0e-22 110.5 1061 24.5
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 9.2e-22 110.2 963 23.5
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 1.6e-21 109.4 101 57.4
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 3.5e-21 108.2 959 23.3
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 5.9e-21 107.5 944 23.7
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 7.7e-21 107.1 159 42.8
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 7.7e-21 107.1 963 23.7
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 2.5e-19 102.1 223 37.7
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 4.3e-19 101.3 988 24.6
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 7.3e-19 100.5 954 24.1
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 8.0e-18 97.1 670 27.0
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 3.0e-17 95.1 763 25.2
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 5.2e-17 94.4 165 37.6
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 6.8e-17 94.0 975 23.0
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 2.0e-16 92.4 944 22.5
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 7.5e-16 90.5 973 22.2
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 1.3e-15 89.7 80 52.5
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 2.4e-14 85.5 119 41.2
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 5.4e-14 84.3 121 40.5
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 2.0e-13 82.4 953 22.7
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 7.8e-13 80.5 41 75.6
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 5.0e-12 77.8 935 22.1
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 1.9e-11 75.9 945 22.6
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 3.3e-11 75.1 116 39.7
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 4.3e-11 74.7 646 23.5
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 1.6e-10 72.8 518 24.5
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 1.0e-09 70.1 158 35.4
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 1.0e-09 70.1 51 60.8
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 2.3e-09 68.9 956 22.0
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 3.1e-09 68.6 659 23.2
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 6.8e-09 67.4 71 43.7
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 8.9e-09 67.0 60 61.7
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 2.6e-08 65.5 593 24.6
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 6.4e-07 60.8 31 71.0
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 1.1e-06 60.1 174 30.5
Mapoly0034s0131 Marchantia polymorpha HOM05D005839 ORTHO05D005686 2.4e-06 58.9 70 45.7
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 3.2e-06 58.5 982 20.9
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 3.2e-06 58.5 193 28.5
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 9.2e-06 57.0 52 50.0


User provided reference genes

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