Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000037g0040 Nicotiana tabacum HOM05D005913 ORTHO05D007138 4.4e-138 494.6 246 100.0
PGSC0003DMG402011001 Solanum tuberosum HOM05D005913 ORTHO05D007138 2.8e-116 422.2 240 87.1
Sopen10g034140 Solanum pennellii HOM05D005913 ORTHO05D007138 1.4e-115 419.9 240 86.7
Peaxi162Scf00228g00514 Petunia axillaris HOM05D000044 ORTHO05D007138 2.4e-115 419.1 233 89.3
Solyc10g084700.2 Solanum lycopersicum HOM05D005913 ORTHO05D007138 5.3e-115 417.9 240 86.2
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 2.2e-113 412.5 240 85.4
CAN.G324.3 Capsicum annuum HOM05D005913 ORTHO05D007138 1.8e-110 402.9 237 83.1
Oeu008301.1 Olea europaea HOM05D005913 ORTHO05D007138 9.4e-96 354.0 233 74.2
Peaxi162Scf00384g00045 Petunia axillaris HOM05D005913 ORTHO05D007138 3.6e-95 352.1 237 76.8
CSS0006724 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 5.1e-94 348.2 235 74.5
CSS0022052 Camellia sinensis var. sinensis HOM05D005913 ORTHO05D007138 5.1e-94 348.2 235 74.5
Hma1.2p1_1287F.1_g273300 Hydrangea macrophylla HOM05D005913 ORTHO05D007138 7.4e-93 344.4 234 75.6
MSTRG.24154 Avicennia marina HOM05D005913 ORTHO05D007138 1.9e-88 329.7 235 70.6
vmacro14595 Vaccinium macrocarpon HOM05D005913 ORTHO05D007138 4.2e-88 328.6 235 70.6
Lsat_1_v5_gn_9_20000 Lactuca sativa HOM05D005913 ORTHO05D007138 1.6e-87 326.6 234 70.5
Rhsim01G0236700 Rhododendron simsii HOM05D005913 ORTHO05D007138 1.0e-86 323.9 239 69.5
Dinv28648 Davidia involucrata HOM05D005913 ORTHO05D007138 2.3e-86 322.8 240 67.1
Dinv25093 Davidia involucrata HOM05D005913 ORTHO05D007138 2.0e-85 319.7 243 69.5
TAR633G1775 Trochodendron aralioides HOM05D005913 ORTHO05D007138 3.3e-85 318.9 223 72.6
ECA247G1367 Erigeron canadensis HOM05D005913 ORTHO05D007138 4.4e-85 318.5 231 68.0
SGA_v2.0_scaffold25G11107 Striga asiatica HOM05D005913 ORTHO05D007138 2.4e-83 312.8 229 69.0
Nn2g15825 Nelumbo nucifera HOM05D005913 ORTHO05D007138 1.0e-81 307.4 221 71.0
Sc21g0006400 Simmondsia chinensis HOM05D005913 ORTHO05D007138 1.3e-81 307.0 242 68.2
CiPaw.13G076700 Carya illinoinensis HOM05D005913 ORTHO05D007138 2.9e-81 305.8 234 68.4
TWI31G0765 Tripterygium wilfordii HOM05D005913 ORTHO05D007138 5.0e-81 305.1 224 69.6
Sc21g0006380 Simmondsia chinensis HOM05D005913 ORTHO05D007138 1.1e-80 303.9 242 67.8
HanXRQChr16g0518331 Helianthus annuus HOM05D005913 ORTHO05D007138 1.9e-80 303.1 229 66.4
QL05p072708 Quercus lobata HOM05D005913 ORTHO05D007138 3.2e-80 302.4 218 71.6
GSVIVG01024730001 Vitis vinifera HOM05D005913 ORTHO05D007138 5.5e-80 301.6 217 71.0
Cfa011705 Carpinus fangiana HOM05D005913 ORTHO05D007138 2.7e-79 299.3 238 67.6
Migut.N03298 Erythranthe guttata HOM05D005913 ORTHO05D007138 2.3e-78 296.2 230 67.8
Duzib150G0854 Durio zibethinus HOM05D005913 ORTHO05D007138 1.2e-77 293.9 230 66.5
Haze_24336 Corylus avellana HOM05D005913 ORTHO05D007138 1.3e-76 290.4 261 61.3
CsaV3_6G016190 Cucumis sativus L. HOM05D005913 ORTHO05D007138 1.3e-76 290.4 230 65.7
MD11G1073200 Malus domestica HOM05D005913 ORTHO05D007138 1.3e-76 290.4 238 65.1
Cc01_g14290 Coffea canephora HOM05D005913 ORTHO05D007138 4.8e-76 288.5 223 67.3
MELO3C025845.2 Cucumis melo HOM05D005913 ORTHO05D007138 4.8e-76 288.5 239 63.6
Lj3A585T46 Lonicera japonica HOM05D005913 ORTHO05D007138 4.8e-76 288.5 235 64.7
Sed0020527 Sechium edule HOM05D005913 ORTHO05D007138 1.8e-75 286.6 223 67.3
Thecc.09G300200 Theobroma cacao HOM05D005913 ORTHO05D007138 4.1e-75 285.4 229 64.2
FAN11G0587 Fragaria x ananassa HOM05D005913 ORTHO05D007138 5.4e-75 285.0 232 64.2
FvH4_3g38720 Fragaria vesca HOM05D005913 ORTHO05D007138 1.6e-74 283.5 232 63.8
Prupe.6G056500 Prunus persica HOM05D005913 ORTHO05D007138 2.7e-74 282.7 238 65.1
Eucgr.J01039 Eucalyptus grandis HOM05D005913 ORTHO05D007138 5.9e-74 281.6 221 67.0
FAN21G0630 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.2e-73 279.6 232 63.8
FAN25G2063 Fragaria x ananassa HOM05D005913 ORTHO05D007138 6.5e-73 278.1 221 65.6
DCAR_002129 Daucus carota HOM05D005913 ORTHO05D007138 1.1e-72 277.3 239 64.4
DCAR_012499 Daucus carota HOM05D005913 ORTHO05D007138 1.1e-72 277.3 238 63.0
Lalb_Chr19g0128221 Lupinus albus HOM05D005913 ORTHO05D007138 1.5e-72 276.9 221 65.6
arahy.Tifrunner.gnm1.ann1.6RYY2X Arachis hypogaea HOM05D005913 ORTHO05D007138 1.9e-72 276.6 217 65.0
TAR369G0609 Trochodendron aralioides HOM05D005913 ORTHO05D007138 1.9e-72 276.6 207 69.1
Gorai.013G259900 Gossypium raimondii HOM05D005913 ORTHO05D007138 9.4e-72 274.2 218 66.5
RcHm_v2.0_Chr5g0069871 Rosa chinensis HOM05D005913 ORTHO05D007138 9.4e-72 274.2 236 61.4
CANSAT56G2716 Cannabis sativa HOM05D005913 ORTHO05D007138 1.6e-71 273.5 223 64.6
Gohir.D13G228900 Gossypium hirsutum HOM05D005913 ORTHO05D007138 2.7e-71 272.7 218 66.1
PGR044G1475 Punica granatum HOM05D005913 ORTHO05D007138 6.1e-71 271.6 232 62.9
AUR62020144 Chenopodium quinoa HOM05D005913 ORTHO05D007138 8.0e-71 271.2 230 63.5
Manes.10G106300 Manihot esculenta HOM05D005913 ORTHO05D007138 6.8e-70 268.1 254 58.7
AUR62001638 Chenopodium quinoa HOM05D005913 ORTHO05D007138 1.5e-69 266.9 231 63.2
FAN16G2194 Fragaria x ananassa HOM05D005913 ORTHO05D007138 2.6e-69 266.2 233 61.8
Gohir.A13G224200 Gossypium hirsutum HOM05D005913 ORTHO05D007138 2.2e-68 263.1 217 66.4
Cpa.g.sc112.8 Carica papaya HOM05D005913 ORTHO05D007138 4.9e-68 261.9 222 63.1
Actinidia16099 Actinidia chinensis HOM05D005913 ORTHO05D007138 6.3e-68 261.5 180 72.2
LjContig00155g0009730 Lotus japonicus HOM05D005913 ORTHO05D007138 3.1e-67 259.2 225 61.8
Psat3g002480 Pisum sativum HOM05D005913 ORTHO05D007138 2.7e-66 256.1 214 64.5
Hund09257 Selenicereus undatus HOM05D005913 ORTHO05D007138 3.5e-66 255.8 226 61.9
Medtr7g117410 Medicago truncatula HOM05D005913 ORTHO05D007138 5.0e-65 251.9 214 62.6
VMungo0647G0764 Vigna mungo HOM05D005913 ORTHO05D007138 8.6e-65 251.1 216 63.0
Potri.006G170500 Populus trichocarpa HOM05D005913 ORTHO05D007138 1.1e-64 250.8 227 61.7
Ca_09509_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.5e-64 249.6 223 60.5
Ca_30058_v3 Cicer arietinum L. HOM05D000390 ORTHO05D007138 2.5e-64 249.6 223 60.5
Ciclev10029073m.g Citrus clementina HOM05D005913 ORTHO05D007138 3.3e-64 249.2 228 60.1
Sabra06G0131300 Salix brachista HOM05D005913 ORTHO05D007138 3.3e-64 249.2 220 62.3
ATR0681G105 Amborella trichopoda HOM05D005913 ORTHO05D007138 7.3e-64 248.1 224 59.4
PSO675G7356 Papaver somniferum HOM05D005913 ORTHO05D007138 9.5e-64 247.7 220 60.5
CDE04G2145 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 4.7e-63 245.4 200 66.5
Glyma.05G235600 Glycine max HOM05D005913 ORTHO05D007138 4.7e-63 245.4 212 62.7
PSO801G0017 Papaver somniferum HOM05D005913 ORTHO05D007138 8.0e-63 244.6 220 60.5
PSO339G4526 Papaver somniferum HOM05D005913 ORTHO05D007138 1.4e-62 243.8 220 60.0
Aqoxy4G02545 Aquilegia oxysepala HOM05D005913 ORTHO05D007138 1.8e-62 243.4 228 58.3
QL01p038500 Quercus lobata HOM05D005913 ORTHO05D007138 4.9e-60 235.3 180 70.6
Phvul.001G033300 Phaseolus vulgaris HOM05D005913 ORTHO05D007138 1.4e-59 233.8 173 69.9
HPP92_028632 Vanilla planifolia HOM05D005913 ORTHO05D007138 1.8e-59 233.4 204 61.8
COL.COLO4_19170 Corchorus olitorius HOM05D005913 ORTHO05D001548 1.2e-58 230.7 205 62.4
Lj4A493T9 Lonicera japonica HOM05D005913 ORTHO05D007138 1.0e-57 227.6 232 55.2
EL10Ac7g16180 Beta vulgaris HOM05D005913 ORTHO05D007138 1.5e-56 223.8 220 55.9
CDE04G2770 Ceratophyllum demersum HOM05D005913 ORTHO05D007138 2.8e-55 219.5 199 62.3
CARHR006930 Cardamine hirsuta HOM05D005913 ORTHO05D007138 3.1e-54 216.1 238 52.9
Thhalv10008508m.g Eutrema salsugineum HOM05D005913 ORTHO05D007138 5.2e-54 215.3 224 55.4
Ah.15g099480 Amaranthus hybridus HOM05D005913 ORTHO05D007138 4.4e-53 212.2 214 54.7
A10p05770 Brassica napus HOM05D005913 ORTHO05D007138 8.3e-52 208.0 206 57.3
C05p05290 Brassica napus HOM05D005913 ORTHO05D007138 8.3e-52 208.0 206 56.8
BolC5t29300H Brassica oleracea HOM05D005913 ORTHO05D007138 8.3e-52 208.0 206 56.8
BraA10t42838Z Brassica rapa HOM05D005913 ORTHO05D007138 8.3e-52 208.0 206 57.3
Aa31LG1G6450 Aethionema arabicum HOM05D005913 ORTHO05D007138 4.1e-51 205.7 245 51.4
Sp1g05970 Schrenkiella parvula HOM05D005913 ORTHO05D007138 5.4e-51 205.3 225 54.2
HPP92_002930 Vanilla planifolia HOM05D005913 ORTHO05D007138 5.4e-51 205.3 190 60.5
AT1G07210 Arabidopsis thaliana HOM05D005913 ORTHO05D007138 3.5e-50 202.6 228 54.4
AL1G17350 Arabidopsis lyrata HOM05D005913 ORTHO05D007138 3.9e-49 199.1 228 53.1
Carub.0001s0651 Capsella rubella HOM05D005913 ORTHO05D007138 8.6e-49 198.0 227 53.3
Os10g0500500 Oryza sativa ssp. japonica HOM05D005913 ORTHO05D007138 2.5e-48 196.4 221 52.0
SalBow6G3913 Salvia bowleyana HOM05D005913 ORTHO05D007138 4.3e-48 195.7 320 41.9
A09p66580 Brassica napus HOM05D005913 ORTHO05D007138 5.6e-48 195.3 197 57.4
C08p50760 Brassica napus HOM05D005913 ORTHO05D007138 5.6e-48 195.3 197 56.9
BolC8t52604H Brassica oleracea HOM05D005913 ORTHO05D007138 5.6e-48 195.3 197 56.9
BraA09t41996Z Brassica rapa HOM05D005913 ORTHO05D007138 7.3e-48 194.9 218 54.6
BcaC07g42020 Brassica carinata HOM05D005913 ORTHO05D007138 2.8e-47 193.0 197 56.3
unitig_26.g9973 Utricularia gibba HOM05D005913 ORTHO05D007138 2.9e-44 183.0 117 78.6
Zm00001eb012770 Zea mays HOM05D005913 ORTHO05D007138 2.9e-44 183.0 238 46.6
BcaC07g42452 Brassica carinata HOM05D005913 ORTHO05D007138 8.3e-44 181.4 185 55.7
Zm00001eb142300 Zea mays HOM05D005913 ORTHO05D007138 1.0e-41 174.5 155 59.4
MD03G1068700 Malus domestica HOM05D005913 ORTHO05D007138 1.4e-38 164.1 102 82.4
TPR.G37238 Trifolium pratense HOM05D005913 ORTHO05D007138 1.2e-37 161.0 185 53.5
BcaB07g33371 Brassica carinata HOM05D005913 ORTHO05D007138 2.3e-33 146.7 157 51.0
BcaC07g42451 Brassica carinata HOM05D005913 ORTHO05D007138 8.6e-33 144.8 97 74.2
Atru.chr3.4201 Acer truncatum HOM05D005913 ORTHO05D007138 2.9e-28 129.8 137 49.6
TPR.G4738 Trifolium pratense HOM05D005913 ORTHO05D007138 1.2e-26 124.4 143 51.0
arahy.Tifrunner.gnm1.ann1.6CR394 Arachis hypogaea HOM05D005913 ORTHO05D007138 1.7e-25 120.6 91 72.5
ClCG02G019520 Citrullus lanatus HOM05D005913 ORTHO05D007138 1.7e-25 120.6 116 55.2
TPR.G3936 Trifolium pratense HOM05D005913 ORTHO05D007138 1.7e-25 120.6 70 85.7
MD03G1068600 Malus domestica HOM05D005913 ORTHO05D007138 6.6e-25 118.6 122 53.3
SEGI_23907 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 8.7e-25 118.2 157 46.5
Mapoly0046s0093 Marchantia polymorpha HOM05D005913 ORTHO05D007138 8.1e-23 111.7 210 37.6
Pp3c9_1670 Physcomitrium patens HOM05D005913 ORTHO05D007138 2.6e-21 106.7 200 38.5
SEGI_13957 Sequoiadendron giganteum HOM05D005913 ORTHO05D007138 4.5e-21 105.9 84 64.3
Atru.chr3.4202 Acer truncatum HOM05D005913 ORTHO05D007138 1.9e-19 100.5 64 78.1
AagrBONN_evm.TU.Sc2ySwM_362.942 Anthoceros agrestis HOM05D005913 ORTHO05D007138 2.1e-18 97.1 219 33.8
Solyc01g058530.4 Solanum lycopersicum HOM05D005913 ORTHO05D007138 1.9e-16 90.5 63 73.0
Peaxi162Scf00378g00212 Petunia axillaris HOM05D000011 ORTHO05D010520 2.8e-15 86.7 48 95.8
CBR_g41534 Chara braunii HOM05D005913 ORTHO05D007138 3.5e-10 69.7 70 52.9
SHI19145 Sapria himalayana HOM05D000002 ORTHO05D000001 3.5e-10 69.7 91 44.0
TPR.G39004 Trifolium pratense HOM05D006629 ORTHO05D008430 3.5e-10 69.7 104 45.2
CARHR102160 Cardamine hirsuta HOM05D005913 ORTHO05D007138 1.1e-06 58.2 101 41.6


User provided reference genes

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