Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 0.0e+00 2231.1 1147 100.0
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 0.0e+00 2107.0 1125 96.3
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 0.0e+00 1832.8 1151 82.5
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 0.0e+00 1790.0 1151 80.4
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 0.0e+00 1778.5 1151 79.8
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 0.0e+00 1778.5 1151 79.8
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 0.0e+00 1240.3 871 75.3
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 3.0e-277 959.1 1180 47.5
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 9.6e-276 954.1 1181 47.2
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 8.4e-248 861.3 1172 43.0
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 4.8e-243 845.5 1168 44.2
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.1e-242 844.3 1181 43.9
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 1.2e-241 840.9 1152 44.5
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 2.2e-240 836.6 1176 43.5
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 2.2e-240 836.6 1167 43.4
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 3.2e-239 832.8 1192 42.3
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 3.0e-237 826.2 1177 42.9
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 5.7e-236 822.0 1179 41.3
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 2.8e-235 819.7 1168 43.2
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 1.2e-233 814.3 1181 41.7
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 2.0e-233 813.5 1181 41.5
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 5.0e-232 808.9 1182 42.6
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.6e-230 803.9 1161 42.6
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 8.8e-221 771.5 1166 40.1
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 2.0e-220 770.4 1169 40.9
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 1.7e-219 767.3 1178 40.7
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 5.5e-215 752.3 1185 39.0
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 6.7e-213 745.3 1185 38.8
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 2.4e-210 736.9 1180 38.9
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 9.4e-207 724.9 1182 37.6
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 2.1e-206 723.8 1145 39.4
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 7.5e-204 715.3 1155 40.2
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 2.3e-200 703.7 1180 37.5
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 1.6e-198 697.6 1184 37.8
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.0e-197 694.9 1179 36.4
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 3.0e-197 693.3 1186 37.7
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 4.0e-197 693.0 1168 39.1
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 6.8e-197 692.2 1172 37.7
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 4.9e-195 686.0 1182 36.3
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 1.1e-194 684.9 445 80.4
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 5.4e-194 682.6 1185 36.5
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 9.2e-194 681.8 1212 35.5
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 1.0e-192 678.3 1173 38.8
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.3e-192 677.9 1212 35.6
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 3.8e-192 676.4 1176 37.3
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 3.8e-192 676.4 1127 38.9
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 1.6e-190 671.0 1187 37.2
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 8.0e-190 668.7 1180 36.1
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 5.2e-189 666.0 1166 37.0
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.3e-187 661.4 1178 38.4
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 3.2e-186 656.8 1176 36.7
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 3.2e-186 656.8 1171 37.2
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 6.0e-185 652.5 1176 37.6
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.7e-184 651.0 1185 36.5
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 8.6e-184 648.7 1173 36.9
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.5e-183 647.9 1169 36.4
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.5e-180 637.9 1187 36.5
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 3.7e-179 633.3 1003 39.5
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 8.6e-176 622.1 1262 35.7
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.1e-175 621.7 1170 37.0
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 2.1e-174 617.5 992 39.8
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 3.6e-174 616.7 1175 35.4
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 4.7e-174 616.3 1178 35.1
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 8.9e-173 612.1 1158 35.3
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 3.4e-172 610.1 1108 36.1
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 9.9e-172 608.6 1115 37.0
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 1.9e-170 604.4 1175 34.6
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 9.2e-170 602.1 1175 34.6
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 5.1e-168 596.3 1174 34.6
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 1.9e-167 594.3 1175 34.6
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 2.5e-167 594.0 1184 35.6
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 1.6e-166 591.3 1169 33.5
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 6.2e-166 589.3 1123 35.4
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 5.4e-162 576.2 1170 33.6
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 3.5e-161 573.5 1170 34.4
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 7.8e-161 572.4 1171 33.6
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 5.1e-160 569.7 1176 34.1
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 1.1e-157 562.0 1060 36.1
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 7.6e-156 555.8 1164 33.1
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 6.4e-155 552.7 1178 32.4
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 6.4e-155 552.7 1167 32.8
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 2.4e-154 550.8 1178 32.9
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 1.6e-153 548.1 1236 33.0
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 1.6e-153 548.1 1182 32.7
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 1.3e-152 545.0 1171 32.5
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 1.1e-146 525.4 956 36.3
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 3.2e-146 523.9 1172 33.3
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 3.3e-143 513.8 1180 31.9
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 4.3e-143 513.5 922 37.4
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 8.1e-142 509.2 1214 30.7
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 7.6e-132 476.1 921 33.8
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 4.9e-131 473.4 991 34.4
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 2.7e-121 441.0 1264 29.7
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 3.9e-120 437.2 677 40.5
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 8.8e-120 436.0 978 32.8
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 3.3e-119 434.1 274 84.7
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 4.2e-114 417.2 1256 27.8
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 8.0e-89 333.2 432 42.8
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 4.8e-86 323.9 1293 26.8
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 4.0e-80 304.3 1165 26.0
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 2.0e-79 302.0 1275 25.3
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 2.2e-78 298.5 899 27.9
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 4.7e-73 280.8 305 48.2
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 8.0e-73 280.0 800 28.8
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 4.4e-71 274.2 320 48.8
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 2.2e-70 271.9 320 48.4
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 4.1e-69 267.7 320 47.5
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.2e-68 266.2 320 46.6
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 5.0e-67 260.8 327 45.6
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 1.2e-60 239.6 302 46.0
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 1.3e-59 236.1 238 53.8
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 2.8e-57 228.4 314 41.1
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 1.1e-56 226.5 314 41.4
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.6e-55 221.9 235 49.4
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 3.7e-54 218.0 1153 24.7
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 5.4e-53 214.2 894 25.2
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 1.2e-52 213.0 353 38.8
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 3.1e-48 198.4 193 51.8
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 1.9e-45 189.1 176 54.5
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 3.2e-45 188.3 422 33.2
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 2.7e-44 185.3 173 55.5
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 3.1e-40 171.8 181 50.3
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.5e-39 169.5 173 51.4
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 8.4e-38 163.7 188 46.8
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 2.1e-36 159.1 169 50.9
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 2.5e-26 125.6 149 50.3
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 9.6e-26 123.6 319 29.5
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 6.2e-25 120.9 254 33.5
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.9e-22 112.1 283 30.7
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 4.6e-20 104.8 227 29.5
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.9e-18 99.4 443 25.3
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 4.3e-18 98.2 492 24.0
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 9.0e-16 90.5 299 27.1
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.2e-15 90.1 118 42.4
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.9e-14 85.5 127 38.6
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 1.1e-13 83.6 104 45.2
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.3e-10 72.0 222 25.7
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 4.8e-09 68.2 88 43.2
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 1.4e-08 66.6 79 48.1
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 1.8e-08 66.2 78 48.7
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 6.9e-08 64.3 47 61.7
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 6.9e-08 64.3 51 56.9
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.2e-07 63.5 137 32.1
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 1.5e-07 63.2 47 59.6
Dinv16431 Davidia involucrata HOM05D004959 ORTHO05D005961 2.6e-07 62.4 107 39.3
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 1.0e-06 60.5 63 52.4


User provided reference genes

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