Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000034g0060 Nicotiana tabacum HOM05D000028 ORTHO05D000390 4.4e-104 381.3 198 100.0
Nitab4.5_0000034g0020 Nicotiana tabacum HOM05D000028 ORTHO05D000390 2.6e-40 169.5 139 73.4
Nitab4.5_0000925g0060 Nicotiana tabacum HOM05D000028 ORTHO05D000390 1.3e-39 167.2 139 72.7
Solyc04g025750.3 Solanum lycopersicum HOM05D000028 ORTHO05D000390 3.7e-34 149.1 139 65.5
PGSC0003DMG400024000 Solanum tuberosum HOM05D000028 ORTHO05D000390 2.4e-33 146.4 139 64.0
Sopen04g013360 Solanum pennellii HOM05D000028 ORTHO05D000390 1.3e-31 140.6 128 65.6
Peaxi162Scf00012g00036 Petunia axillaris HOM05D000028 ORTHO05D000390 1.1e-30 137.5 139 62.6
Nitab4.5_0001474g0050 Nicotiana tabacum HOM05D000028 ORTHO05D000390 7.5e-27 124.8 139 55.4
Nitab4.5_0005555g0010 Nicotiana tabacum HOM05D000028 ORTHO05D000390 7.5e-27 124.8 139 55.4
Solyc05g005870.3 Solanum lycopersicum HOM05D000028 ORTHO05D000390 2.2e-26 123.2 130 56.9
Peaxi162Scf00421g00332 Petunia axillaris HOM05D000028 ORTHO05D000390 9.1e-25 117.9 136 52.9
Migut.E00149 Erythranthe guttata HOM05D000028 ORTHO05D000390 2.2e-23 113.2 131 52.7
Migut.E00148 Erythranthe guttata HOM05D000028 ORTHO05D000390 6.1e-21 105.1 133 50.4
Actinidia15023 Actinidia chinensis HOM05D000028 ORTHO05D000390 1.4e-20 104.0 160 43.8
Cc11_g14380 Coffea canephora HOM05D000028 ORTHO05D000390 3.0e-20 102.8 138 47.8
Sopen05g001880 Solanum pennellii HOM05D000028 ORTHO05D000390 5.2e-20 102.1 110 55.5
SalBow2G1022 Salvia bowleyana HOM05D000028 ORTHO05D000390 2.0e-19 100.1 129 48.8
SalBow2G3286 Salvia bowleyana HOM05D000028 ORTHO05D000390 2.0e-19 100.1 129 48.8
Manes.05G089600 Manihot esculenta HOM05D000028 ORTHO05D000390 2.2e-18 96.7 132 48.5
BraA07t30748Z Brassica rapa HOM05D000028 ORTHO05D000390 1.1e-17 94.4 134 46.3
Potri.010G096100 Populus trichocarpa HOM05D000028 ORTHO05D000390 1.1e-17 94.4 153 42.5
Oeu039484.2 Olea europaea HOM05D000028 ORTHO05D000390 1.4e-17 94.0 132 47.7
BcaB03g15538 Brassica carinata HOM05D000028 ORTHO05D000390 2.4e-17 93.2 134 46.3
A07p31130 Brassica napus HOM05D000028 ORTHO05D000390 2.4e-17 93.2 134 45.5
Thecc.02G247400 Theobroma cacao HOM05D000028 ORTHO05D000390 2.4e-17 93.2 150 42.0
A02p16420 Brassica napus HOM05D000028 ORTHO05D000390 5.4e-17 92.0 131 45.0
BraA02t06701Z Brassica rapa HOM05D000028 ORTHO05D000390 5.4e-17 92.0 131 45.0
BcaB05g24543 Brassica carinata HOM05D000028 ORTHO05D000390 9.1e-17 91.3 132 47.0
A07p36690 Brassica napus HOM05D000028 ORTHO05D000390 9.1e-17 91.3 132 46.2
BraA07t31237Z Brassica rapa HOM05D000028 ORTHO05D000390 9.1e-17 91.3 132 46.2
BcaC03g15171 Brassica carinata HOM05D000028 ORTHO05D000390 1.6e-16 90.5 131 44.3
C02p27450 Brassica napus HOM05D000028 ORTHO05D000390 1.6e-16 90.5 131 44.3
BolC2t08806H Brassica oleracea HOM05D000028 ORTHO05D000390 1.6e-16 90.5 131 44.3
BcaB03g14790 Brassica carinata HOM05D000028 ORTHO05D000390 3.5e-16 89.4 132 45.5
C06p44100 Brassica napus HOM05D000028 ORTHO05D000390 3.5e-16 89.4 130 46.9
BolC6t39483H Brassica oleracea HOM05D000028 ORTHO05D000390 3.5e-16 89.4 130 46.9
Sed0005480 Sechium edule HOM05D000028 ORTHO05D000390 3.5e-16 89.4 129 45.7
MD16G1088700 Malus domestica HOM05D000028 ORTHO05D000390 4.5e-16 89.0 156 39.1
BcaC08g45832 Brassica carinata HOM05D000028 ORTHO05D000390 5.9e-16 88.6 134 44.8
BolC6t38738H Brassica oleracea HOM05D000028 ORTHO05D000390 5.9e-16 88.6 134 44.8
C06p36180 Brassica napus HOM05D000028 ORTHO05D000390 7.7e-16 88.2 134 44.8
Thhalv10018724m.g Eutrema salsugineum HOM05D000028 ORTHO05D000390 7.7e-16 88.2 129 45.0
BcaC08g46470 Brassica carinata HOM05D000028 ORTHO05D000390 1.0e-15 87.8 130 46.2
Carub.0002s1694 Capsella rubella HOM05D000028 ORTHO05D000390 1.0e-15 87.8 130 46.2
CARHR063380 Cardamine hirsuta HOM05D000028 ORTHO05D000390 1.0e-15 87.8 130 44.6
Sp5g25370 Schrenkiella parvula HOM05D000028 ORTHO05D000390 1.0e-15 87.8 132 45.5
Sed0021587 Sechium edule HOM05D000028 ORTHO05D000390 1.0e-15 87.8 187 36.4
ClCG05G025140 Citrullus lanatus HOM05D000028 ORTHO05D000390 1.7e-15 87.0 139 42.4
Gohir.D02G164600 Gossypium hirsutum HOM05D000028 ORTHO05D000390 2.9e-15 86.3 162 35.8
Gorai.005G184500 Gossypium raimondii HOM05D000028 ORTHO05D000390 2.9e-15 86.3 162 35.8
CAN.G205.29 Capsicum annuum HOM05D000028 ORTHO05D000390 5.0e-15 85.5 57 73.7
CsaV3_5G031760 Cucumis sativus L. HOM05D000028 ORTHO05D000390 5.0e-15 85.5 128 44.5
AL2G29550 Arabidopsis lyrata HOM05D000028 ORTHO05D000390 6.5e-15 85.1 129 41.9
COL.COLO4_19533 Corchorus olitorius HOM05D000028 ORTHO05D000390 6.5e-15 85.1 131 41.2
Thhalv10018689m.g Eutrema salsugineum HOM05D000028 ORTHO05D000390 6.5e-15 85.1 130 43.8
FAN17G0097 Fragaria x ananassa HOM05D000028 ORTHO05D000390 6.5e-15 85.1 160 36.9
AT1G70260 Arabidopsis thaliana HOM05D000028 ORTHO05D000390 8.5e-15 84.7 129 41.9
THA.LOC104808909 Tarenaya hassleriana HOM05D000028 ORTHO05D000390 8.5e-15 84.7 130 43.8
Gohir.A03G141600 Gossypium hirsutum HOM05D000028 ORTHO05D000390 1.1e-14 84.3 129 41.1
THA.LOC104822128 Tarenaya hassleriana HOM05D000028 ORTHO05D000390 1.1e-14 84.3 182 37.9
MELO3C012015.2 Cucumis melo HOM05D000028 ORTHO05D000390 1.5e-14 84.0 128 43.8
FvH4_4g34880 Fragaria vesca HOM05D000028 ORTHO05D000390 1.5e-14 84.0 129 41.1
FAN07G0468 Fragaria x ananassa HOM05D000028 ORTHO05D000390 1.9e-14 83.6 129 41.1
Prupe.1G257800 Prunus persica HOM05D000028 ORTHO05D000390 3.2e-14 82.8 129 44.2
Aa31LG4G10670 Aethionema arabicum HOM05D000028 ORTHO05D000390 4.2e-14 82.4 130 43.1
PSO063G5370 Papaver somniferum HOM05D000028 ORTHO05D000390 4.7e-13 79.0 142 39.4
PSO832G4149 Papaver somniferum HOM05D000028 ORTHO05D000390 4.7e-13 79.0 142 39.4
TPR.G18751 Trifolium pratense HOM05D000028 ORTHO05D000390 4.7e-13 79.0 132 37.1
TWI36G1752 Tripterygium wilfordii HOM05D000028 ORTHO05D000390 1.0e-12 77.8 140 40.7
VMungo1309G0574 Vigna mungo HOM05D000028 ORTHO05D000390 1.0e-12 77.8 131 37.4
Rhsim08G0169500 Rhododendron simsii HOM05D000028 ORTHO05D000390 1.4e-12 77.4 129 38.8
CANSAT64G1230 Cannabis sativa HOM05D000028 ORTHO05D000390 1.8e-12 77.0 138 40.6
CANSAT01G1028 Cannabis sativa HOM05D000028 ORTHO05D000390 2.3e-12 76.6 135 42.2
ECA233G5337 Erigeron canadensis HOM05D000028 ORTHO05D000390 2.3e-12 76.6 131 39.7
Glyma.06G123200 Glycine max HOM05D000028 ORTHO05D000390 2.3e-12 76.6 132 39.4
PGR119G0838 Punica granatum HOM05D000028 ORTHO05D000390 2.3e-12 76.6 139 39.6
Psat5g080160 Pisum sativum HOM05D000028 ORTHO05D000390 3.0e-12 76.3 132 38.6
HanXRQChr08g0208941 Helianthus annuus HOM05D000028 ORTHO05D000390 4.0e-12 75.9 133 43.6
Ciclev10033765m.g Citrus clementina HOM05D000028 ORTHO05D000390 5.2e-12 75.5 132 44.7
Phvul.009G135300 Phaseolus vulgaris HOM05D000028 ORTHO05D000390 5.2e-12 75.5 131 36.6
Ca_21900_v3 Cicer arietinum L. HOM05D000028 ORTHO05D000390 6.8e-12 75.1 139 37.4
Solyc04g025780.1 Solanum lycopersicum HOM05D000028 ORTHO05D000390 8.8e-12 74.7 139 43.9
CiPaw.05G148500 Carya illinoinensis HOM05D000028 ORTHO05D000390 1.2e-11 74.3 109 47.7
Atru.chr11.1978 Acer truncatum HOM05D000028 ORTHO05D000390 2.6e-11 73.2 119 43.7
TPR.G37487 Trifolium pratense HOM05D000028 ORTHO05D000390 2.6e-11 73.2 129 38.0
Carub.0002s0520 Capsella rubella HOM05D000028 ORTHO05D000390 3.4e-11 72.8 128 37.5
Medtr4g106720 Medicago truncatula HOM05D000028 ORTHO05D000390 3.4e-11 72.8 129 37.2
Ah.03g132490 Amaranthus hybridus HOM05D000028 ORTHO05D000390 4.4e-11 72.4 156 37.8
CARHR052900 Cardamine hirsuta HOM05D000028 ORTHO05D000390 4.4e-11 72.4 129 41.1
Glyma.06G123300 Glycine max HOM05D000028 ORTHO05D000390 5.7e-11 72.0 132 37.9
AL2G16640 Arabidopsis lyrata HOM05D000028 ORTHO05D000390 9.8e-11 71.2 128 36.7
AT1G60050 Arabidopsis thaliana HOM05D000028 ORTHO05D000390 9.8e-11 71.2 159 33.3
MBI14_g15965_MAGBIO Magnolia biondii HOM05D000028 ORTHO05D000390 9.8e-11 71.2 129 39.5
BcaB07g31199 Brassica carinata HOM05D000028 ORTHO05D000390 1.3e-10 70.9 129 39.5
Sp2g04550 Schrenkiella parvula HOM05D000028 ORTHO05D000390 1.3e-10 70.9 129 40.3
Actinidia33052 Actinidia chinensis HOM05D000028 ORTHO05D000390 1.7e-10 70.5 131 35.9
AUR62005330 Chenopodium quinoa HOM05D000028 ORTHO05D000390 1.7e-10 70.5 151 36.4
Ah.02g131160 Amaranthus hybridus HOM05D000028 ORTHO05D000390 2.2e-10 70.1 149 38.9
BcaC04g22212 Brassica carinata HOM05D000028 ORTHO05D000390 2.2e-10 70.1 129 38.8
EL10Ac6g13632 Beta vulgaris HOM05D000028 ORTHO05D000390 2.8e-10 69.7 131 37.4
A09p17730 Brassica napus HOM05D000028 ORTHO05D000390 2.8e-10 69.7 129 38.8
BNapus_Darmor_BZH_scaffold_155p00010 Brassica napus HOM05D000028 ORTHO05D000390 2.8e-10 69.7 129 38.8
C09p22060 Brassica napus HOM05D000028 ORTHO05D000390 2.8e-10 69.7 129 38.8
BolC9t55119H Brassica oleracea HOM05D000028 ORTHO05D000390 2.8e-10 69.7 129 38.8
BraA09t37405Z Brassica rapa HOM05D000028 ORTHO05D000390 2.8e-10 69.7 129 38.8
Phvul.009G135400 Phaseolus vulgaris HOM05D000028 ORTHO05D000390 2.8e-10 69.7 132 37.9
vmacro19369 Vaccinium macrocarpon HOM05D000028 ORTHO05D000390 3.7e-10 69.3 128 36.7
Sc04g0008960 Simmondsia chinensis HOM05D000028 ORTHO05D000390 4.9e-10 68.9 130 36.2
AUR62013977 Chenopodium quinoa HOM05D000028 ORTHO05D000390 6.3e-10 68.6 149 36.2
Thhalv10023532m.g Eutrema salsugineum HOM05D000028 ORTHO05D000390 8.3e-10 68.2 129 39.5
Aa31LG2G10190 Aethionema arabicum HOM05D000028 ORTHO05D000390 1.8e-09 67.0 128 35.9
Hma1.2p1_0176F.1_g077750 Hydrangea macrophylla HOM05D000028 ORTHO05D000390 4.1e-09 65.9 130 35.4
Lj1g0000375 Lotus japonicus HOM05D000028 ORTHO05D000390 4.1e-09 65.9 135 35.6
MD06G1178000 Malus domestica HOM05D000028 ORTHO05D000390 4.1e-09 65.9 139 36.7
CSS0020869 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D000390 5.4e-09 65.5 129 34.9
THA.LOC104816748 Tarenaya hassleriana HOM05D000028 ORTHO05D000390 5.4e-09 65.5 156 34.6
Sabra15G0097400 Salix brachista HOM05D000028 ORTHO05D000390 7.0e-09 65.1 128 36.7
Cfa019084 Carpinus fangiana HOM05D000028 ORTHO05D000390 9.2e-09 64.7 139 34.5
Manes.14G068500 Manihot esculenta HOM05D000028 ORTHO05D000390 1.2e-08 64.3 128 35.9
Potri.015G073200 Populus trichocarpa HOM05D000028 ORTHO05D000390 1.2e-08 64.3 140 35.7
Prupe.5G177200 Prunus persica HOM05D000028 ORTHO05D000390 1.2e-08 64.3 138 34.8
Haze_07478 Corylus avellana HOM05D000028 ORTHO05D000390 1.6e-08 63.9 139 34.5
Eucgr.B00351 Eucalyptus grandis HOM05D000028 ORTHO05D000390 2.7e-08 63.2 144 35.4
QL10p013540 Quercus lobata HOM05D000028 ORTHO05D000390 2.7e-08 63.2 140 33.6
RcHm_v2.0_Chr7g0194041 Rosa chinensis HOM05D000028 ORTHO05D000390 2.7e-08 63.2 130 36.2
Sabra10G0068700 Salix brachista HOM05D000028 ORTHO05D000390 2.7e-08 63.2 151 37.7
Atru.chr9.2427 Acer truncatum HOM05D000028 ORTHO05D000390 3.5e-08 62.8 129 34.9
Lj4g0012892 Lotus japonicus HOM05D000028 ORTHO05D000390 3.5e-08 62.8 139 35.3
Rhsim08G0169700 Rhododendron simsii HOM05D000028 ORTHO05D000390 4.5e-08 62.4 122 36.1
Duzib205G1445 Durio zibethinus HOM05D000028 ORTHO05D000390 5.9e-08 62.0 137 33.6
TAR629G3011 Trochodendron aralioides HOM05D000028 ORTHO05D000390 7.7e-08 61.6 135 32.6
Hma1.2p1_0697F.1_g204870 Hydrangea macrophylla HOM05D000028 ORTHO05D000390 1.7e-07 60.5 130 33.8
Lsat_1_v5_gn_8_159641 Lactuca sativa HOM05D000028 ORTHO05D000390 1.7e-07 60.5 45 66.7
Sc12g0005470 Simmondsia chinensis HOM05D000028 ORTHO05D000390 1.7e-07 60.5 152 34.2
arahy.Tifrunner.gnm1.ann1.PZRY5L Arachis hypogaea HOM05D000028 ORTHO05D000390 3.8e-07 59.3 128 34.4
arahy.Tifrunner.gnm1.ann1.MW20QI Arachis hypogaea HOM05D000028 ORTHO05D000390 5.0e-07 58.9 128 33.6
Gohir.A09G170500 Gossypium hirsutum HOM05D000028 ORTHO05D000390 8.6e-07 58.2 137 32.8
Gorai.006G188000 Gossypium raimondii HOM05D000028 ORTHO05D000390 1.1e-06 57.8 126 34.9
Gohir.D09G166200 Gossypium hirsutum HOM05D000028 ORTHO05D000390 1.5e-06 57.4 126 34.1
RcHm_v2.0_Chr4g0444311 Rosa chinensis HOM05D000028 ORTHO05D000390 1.9e-06 57.0 129 31.8
SEGI_37665 Sequoiadendron giganteum HOM05D000028 ORTHO05D000390 2.5e-06 56.6 139 35.3
Sc11g0006230 Simmondsia chinensis HOM05D000028 ORTHO05D000296 4.3e-06 55.8 48 50.0
Rhsim07G0071600 Rhododendron simsii HOM05D000028 ORTHO05D000296 5.6e-06 55.5 48 50.0
AUR62035942 Chenopodium quinoa HOM05D000028 ORTHO05D000390 7.3e-06 55.1 128 33.6
Actinidia07966 Actinidia chinensis HOM05D000028 ORTHO05D000296 9.5e-06 54.7 48 47.9
CiPaw.09G051000 Carya illinoinensis HOM05D000028 ORTHO05D000296 9.5e-06 54.7 48 47.9
CiPaw.14G010400 Carya illinoinensis HOM05D000028 ORTHO05D000296 9.5e-06 54.7 56 41.1
Rhsim04G0116900 Rhododendron simsii HOM05D000028 ORTHO05D000296 9.5e-06 54.7 48 47.9
TAR118G0001 Trochodendron aralioides HOM05D000028 ORTHO05D000296 9.5e-06 54.7 48 47.9
TAR623G1162 Trochodendron aralioides HOM05D000028 ORTHO05D000296 9.5e-06 54.7 48 47.9


User provided reference genes

Program Settings