Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.8e-169 597.8 315 100.0
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.6e-156 554.7 317 92.4
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 6.3e-137 491.1 317 82.0
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 3.1e-136 488.8 317 81.7
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 2.9e-134 482.3 314 81.8
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 4.2e-133 478.4 271 89.3
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 1.0e-131 473.8 301 81.1
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 8.3e-105 384.4 303 65.0
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 1.7e-102 376.7 277 67.9
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.6e-100 370.2 277 67.5
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 4.7e-100 368.6 282 62.8
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 1.8e-99 366.7 272 66.5
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 2.3e-99 366.3 303 61.7
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 4.0e-99 365.5 273 65.9
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 5.2e-99 365.2 298 63.1
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 6.8e-99 364.8 317 59.3
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 2.0e-98 363.2 267 64.4
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 5.8e-98 361.7 304 61.8
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.7e-97 360.1 312 58.3
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 1.7e-97 360.1 272 64.3
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 2.9e-97 359.4 315 60.0
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 3.7e-97 359.0 267 65.5
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 1.9e-96 356.7 294 62.6
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.6e-95 353.6 299 60.9
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 3.5e-95 352.4 306 60.1
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 6.0e-95 351.7 289 60.2
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 6.0e-95 351.7 305 57.7
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 6.0e-95 351.7 303 61.4
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 7.8e-95 351.3 304 58.2
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 7.8e-95 351.3 298 59.7
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 1.3e-94 350.5 308 60.4
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 3.9e-94 349.0 318 58.8
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 3.9e-94 349.0 285 61.8
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.6e-94 348.2 286 64.3
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.6e-94 348.2 286 64.3
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.1e-93 347.4 275 61.5
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 1.1e-93 347.4 317 59.6
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.5e-93 347.1 303 60.4
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 3.3e-93 345.9 309 57.9
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 4.3e-93 345.5 273 62.3
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 9.5e-93 344.4 310 59.4
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 9.5e-93 344.4 306 58.8
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.8e-92 342.8 276 59.8
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 3.6e-92 342.4 274 63.5
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 4.7e-92 342.0 286 59.8
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 3.1e-91 339.3 304 59.9
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 6.8e-91 338.2 315 54.9
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.5e-90 337.0 266 60.9
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 1.5e-90 337.0 299 59.5
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 2.0e-90 336.7 285 59.3
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 2.6e-90 336.3 294 57.8
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 4.4e-90 335.5 270 62.2
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 2.9e-89 332.8 299 57.2
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 3.7e-89 332.4 266 59.8
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 6.4e-89 331.6 271 58.3
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 6.4e-89 331.6 306 54.6
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 8.3e-89 331.3 295 58.3
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 2.4e-88 329.7 292 57.5
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 4.1e-88 328.9 271 57.9
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.2e-87 327.4 276 59.8
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 1.2e-87 327.4 265 61.9
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 2.7e-87 326.2 290 55.9
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 1.0e-86 324.3 299 56.5
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.0e-86 324.3 321 56.4
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 3.0e-86 322.8 309 57.0
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 1.1e-85 320.9 271 59.0
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.5e-85 320.5 271 59.0
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 2.5e-85 319.7 272 58.5
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 7.3e-85 318.2 298 54.7
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 1.6e-84 317.0 271 56.8
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 2.8e-84 316.2 277 54.2
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 1.8e-83 313.5 294 53.7
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 4.0e-83 312.4 301 54.2
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 6.8e-83 311.6 280 54.6
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.5e-82 310.5 310 52.3
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 2.6e-82 309.7 286 53.5
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 3.4e-82 309.3 308 51.3
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.4e-82 308.9 298 53.4
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 9.9e-82 307.8 313 49.8
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 6.4e-81 305.1 280 54.6
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 5.4e-80 302.0 229 67.2
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 6.0e-79 298.5 298 53.0
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 6.0e-79 298.5 315 49.5
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.7e-78 297.0 324 48.8
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 2.3e-78 296.6 314 49.4
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 8.7e-78 294.7 305 49.8
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.5e-77 293.9 319 50.8
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 5.6e-77 292.0 306 49.0
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 1.4e-75 287.3 297 50.2
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.4e-75 286.6 313 48.2
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.4e-75 286.6 319 48.0
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 6.9e-75 285.0 288 50.7
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 6.9e-75 285.0 274 54.0
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.2e-74 284.3 269 52.0
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 1.2e-74 284.3 308 48.1
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.2e-74 284.3 304 51.3
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 4.4e-74 282.3 289 52.2
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.7e-73 280.4 319 47.6
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 2.2e-73 280.0 265 54.7
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 3.8e-73 279.3 310 47.7
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 4.9e-73 278.9 307 45.9
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 6.4e-73 278.5 302 49.0
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.4e-72 277.3 313 46.3
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 1.9e-72 276.9 358 43.6
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 4.2e-72 275.8 311 47.6
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 5.4e-72 275.4 311 46.6
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 6.0e-71 271.9 283 51.6
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 2.3e-70 270.0 243 52.7
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 3.9e-70 269.2 320 44.7
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 6.2e-68 261.9 199 66.3
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 8.1e-68 261.5 285 44.9
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 1.8e-67 260.4 204 62.7
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.5e-66 257.3 203 65.5
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.5e-66 257.3 203 65.5
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 7.6e-66 255.0 279 48.7
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.2e-65 253.4 307 46.3
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 2.2e-65 253.4 292 45.5
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 3.7e-60 236.1 307 45.9
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 3.7e-60 236.1 290 42.4
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 8.1e-60 235.0 271 47.2
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.1e-59 233.0 267 44.9
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 8.4e-57 224.9 264 47.0
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.1e-55 220.3 235 47.2
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.0e-54 218.0 260 43.1
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 1.8e-54 217.2 269 42.4
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.3e-54 216.9 290 41.4
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 5.1e-54 215.7 207 56.5
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 3.4e-50 203.0 297 39.4
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 9.3e-48 194.9 178 53.9
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.3e-46 191.0 171 55.0
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 8.7e-46 188.3 260 38.1
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 3.3e-45 186.4 258 39.1
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 9.7e-45 184.9 259 37.5
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 8.2e-44 181.8 261 39.8
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.6e-42 176.8 276 36.6
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 4.5e-42 176.0 259 37.8
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 4.2e-32 142.9 98 72.4
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 3.2e-24 116.7 206 33.0
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.0e-17 95.1 82 61.0
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.0e-17 95.1 82 61.0
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 6.5e-17 92.4 118 37.3
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 4.2e-16 89.7 205 27.8
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 7.2e-16 89.0 101 46.5
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 6.1e-15 85.9 95 42.1
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 6.1e-15 85.9 131 37.4
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 9.7e-13 78.6 259 26.6
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 2.2e-12 77.4 83 44.6
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 3.7e-12 76.6 261 26.4
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 1.4e-11 74.7 264 24.6


User provided reference genes

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