Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000033g0070 Nicotiana tabacum HOM05D007099 ORTHO05D009081 1.5e-33 145.6 71 100.0
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 6.2e-16 87.0 51 86.3
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 1.8e-15 85.5 51 84.3
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 6.8e-15 83.6 51 82.4
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 6.8e-15 83.6 51 82.4
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 4.4e-14 80.9 51 82.4
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 9.9e-14 79.7 51 82.4
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 9.9e-14 79.7 51 82.4
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 9.9e-14 79.7 51 82.4
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 2.2e-13 78.6 52 76.9
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 6.4e-13 77.0 51 78.4
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 6.4e-13 77.0 51 78.4
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 8.3e-13 76.6 51 78.4
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 1.1e-12 76.3 50 78.0
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 1.1e-12 76.3 51 74.5
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.1e-12 76.3 51 72.5
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.1e-12 76.3 51 72.5
Lalb_Chr00c21g0405241 Lupinus albus HOM05D007099 ORTHO05D009081 2.4e-12 75.1 40 92.5
GSVIVG01018700001 Vitis vinifera HOM05D007099 ORTHO05D009081 4.1e-12 74.3 42 83.3
Aa31LG1G28210 Aethionema arabicum HOM05D007099 ORTHO05D009081 1.2e-11 72.8 50 72.0
DCAR_014524 Daucus carota HOM05D007099 ORTHO05D009081 6.0e-11 70.5 45 77.8
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 6.0e-11 70.5 51 68.6
AL4G30490 Arabidopsis lyrata HOM05D007099 ORTHO05D009081 1.7e-10 68.9 48 70.8
AT2G34520 Arabidopsis thaliana HOM05D007099 ORTHO05D009081 1.7e-10 68.9 48 70.8
Carub.0004s1619 Capsella rubella HOM05D007099 ORTHO05D009081 1.7e-10 68.9 48 70.8
Thhalv10017324m.g Eutrema salsugineum HOM05D007099 ORTHO05D009081 1.7e-10 68.9 48 70.8
arahy.Tifrunner.gnm1.ann1.HLYH4Q Arachis hypogaea HOM05D007099 ORTHO05D009081 2.3e-10 68.6 39 84.6
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 5.1e-10 67.4 51 64.7
Sp4g16780 Schrenkiella parvula HOM05D007099 ORTHO05D009081 5.1e-10 67.4 48 68.8
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 6.6e-10 67.0 49 69.4
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 6.6e-10 67.0 49 69.4
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 6.6e-10 67.0 49 69.4
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 6.6e-10 67.0 49 69.4
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 6.6e-10 67.0 49 69.4
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 8.6e-10 66.6 49 69.4
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 1.1e-09 66.2 46 69.6
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 1.1e-09 66.2 46 69.6
BcaB02g09534 Brassica carinata HOM05D007099 ORTHO05D009081 1.5e-09 65.9 48 66.7
BcaB02g09535 Brassica carinata HOM05D007099 ORTHO05D009081 1.5e-09 65.9 48 66.7
BcaB06g28779 Brassica carinata HOM05D007099 ORTHO05D009081 1.5e-09 65.9 48 66.7
BcaC02g11514 Brassica carinata HOM05D007099 ORTHO05D009081 1.5e-09 65.9 48 66.7
A04p26440 Brassica napus HOM05D007099 ORTHO05D009081 1.5e-09 65.9 48 66.7
A05p11160 Brassica napus HOM05D007099 ORTHO05D009081 1.5e-09 65.9 48 66.7
C04p14510 Brassica napus HOM05D007099 ORTHO05D009081 1.5e-09 65.9 48 66.7
C04p63850 Brassica napus HOM05D007099 ORTHO05D009081 1.5e-09 65.9 48 66.7
BolC4t23034H Brassica oleracea HOM05D007099 ORTHO05D009081 1.5e-09 65.9 48 66.7
BolC4t27852H Brassica oleracea HOM05D007099 ORTHO05D009081 1.5e-09 65.9 48 66.7
BraA04t18148Z Brassica rapa HOM05D007099 ORTHO05D009081 1.5e-09 65.9 48 66.7
BraA05t20062Z Brassica rapa HOM05D007099 ORTHO05D009081 1.5e-09 65.9 48 66.7
CARHR128610 Cardamine hirsuta HOM05D007099 ORTHO05D009081 1.5e-09 65.9 48 66.7
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 1.5e-09 65.9 38 81.6
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 1.9e-09 65.5 51 60.8
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 3.3e-09 64.7 47 68.1
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 3.3e-09 64.7 47 68.1
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 1.2e-08 62.8 47 68.1
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 1.2e-08 62.8 47 68.1
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 1.2e-08 62.8 47 68.1
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 2.1e-08 62.0 47 66.0
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 2.1e-08 62.0 47 66.0
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 2.8e-08 61.6 51 60.8
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 2.8e-08 61.6 51 60.8
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 3.6e-08 61.2 42 66.7
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 3.6e-08 61.2 42 66.7
Gohir.A01G126800 Gossypium hirsutum HOM05D007099 ORTHO05D009081 4.7e-08 60.8 41 75.6
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 4.7e-08 60.8 42 71.4
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 8.1e-08 60.1 49 59.2
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 1.4e-07 59.3 43 62.8
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.8e-07 58.9 49 59.2
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 2.4e-07 58.5 44 72.7
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 5.2e-07 57.4 49 53.1
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 6.8e-07 57.0 49 55.1
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 6.8e-07 57.0 44 63.6
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 8.9e-07 56.6 49 55.1
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 1.2e-06 56.2 51 52.9
FvH4_3g30490 Fragaria vesca HOM05D007099 ORTHO05D009081 1.2e-06 56.2 49 59.2
FAN11G0918 Fragaria x ananassa HOM05D007099 ORTHO05D009081 1.2e-06 56.2 49 59.2
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 1.2e-06 56.2 49 59.2
Nitab4.5_0007881g0020 Nicotiana tabacum HOM05D009026 ORTHO05D049333 2.0e-06 55.5 29 96.6
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 2.0e-06 55.5 49 59.2
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 3.4e-06 54.7 49 53.1
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 3.4e-06 54.7 53 52.8
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 3.4e-06 54.7 49 57.1
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 4.4e-06 54.3 39 74.4
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 5.8e-06 53.9 49 57.1
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 5.8e-06 53.9 49 57.1
PSO675G5170 Papaver somniferum HOM05D007099 ORTHO05D009081 5.8e-06 53.9 49 57.1
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 7.6e-06 53.5 49 57.1
Nitab4.5_0005831g0110 Nicotiana tabacum HOM05D008016 ORTHO05D011667 9.9e-06 53.1 33 81.8


User provided reference genes

Program Settings