Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000031g0200 Nicotiana tabacum HOM05D002660 ORTHO05D003902 4.1e-153 544.7 271 100.0
Nitab4.5_0017902g0020 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.6e-104 383.3 282 75.5
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.2e-98 362.8 243 76.1
Peaxi162Scf01528g00009 Petunia axillaris HOM05D010952 ORTHO05D017366 4.7e-88 328.6 256 69.1
CSS0017389 Camellia sinensis var. sinensis HOM05D002660 ORTHO05D003902 8.5e-74 281.2 164 82.9
Nitab4.5_0000172g2140 Nicotiana tabacum HOM05D002660 ORTHO05D003902 4.0e-71 272.3 167 78.4
Sopen11g012750 Solanum pennellii HOM05D002660 ORTHO05D003902 1.0e-66 257.7 151 82.1
Nitab4.5_0001607g0070 Nicotiana tabacum HOM05D002660 ORTHO05D003902 3.3e-57 226.1 127 88.2
TAR371G0124 Trochodendron aralioides HOM05D002660 ORTHO05D003902 1.1e-52 211.1 136 77.9
Nitab4.5_0009256g0020 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.7e-51 206.5 124 82.3
CAN.G1355.2 Capsicum annuum HOM05D002660 ORTHO05D003902 8.9e-47 191.4 133 72.2
Nitab4.5_0001796g0170 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.0e-46 190.3 119 79.8
CAN.G1594.3 Capsicum annuum HOM05D002660 ORTHO05D011674 3.4e-46 189.5 126 76.2
Peaxi162Scf00651g00640 Petunia axillaris HOM05D002660 ORTHO05D003902 5.4e-44 182.2 130 74.6
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.1e-41 174.5 154 64.3
Nitab4.5_0001152g0860 Nicotiana tabacum HOM05D002660 ORTHO05D003902 4.9e-37 159.1 110 74.5
Nitab4.5_0000592g0160 Nicotiana tabacum HOM05D002660 ORTHO05D003902 4.7e-32 142.5 166 53.6
Nn1g10113 Nelumbo nucifera HOM05D002660 ORTHO05D003902 2.0e-30 137.1 90 77.8
Solyc07g008830.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.0e-26 124.8 76 84.2
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 1.7e-26 124.0 217 34.1
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 1.7e-26 124.0 211 36.5
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 1.2e-24 117.9 183 36.1
Nitab4.5_0001023g0120 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.6e-22 110.2 99 65.7
Lj2A1234T113 Lonicera japonica HOM05D002660 ORTHO05D003902 3.4e-22 109.8 174 37.9
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 8.4e-21 105.1 184 39.7
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 5.4e-20 102.4 176 35.2
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 2.7e-19 100.1 167 34.7
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 4.6e-19 99.4 128 44.5
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 4.6e-19 99.4 128 44.5
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 4.6e-19 99.4 128 44.5
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 4.6e-19 99.4 128 44.5
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 6.0e-19 99.0 128 44.5
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 6.0e-19 99.0 102 52.9
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 1.3e-18 97.8 184 38.6
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 1.7e-18 97.4 92 51.1
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 2.3e-18 97.1 103 45.6
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 3.9e-18 96.3 92 50.0
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 5.1e-18 95.9 183 35.5
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 6.6e-18 95.5 174 34.5
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 8.7e-18 95.1 179 35.2
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 1.1e-17 94.7 96 47.9
Actinidia02791 Actinidia chinensis HOM05D002660 ORTHO05D003902 1.9e-17 94.0 139 41.7
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 1.9e-17 94.0 176 32.4
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.5e-17 93.6 160 35.6
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.5e-17 93.6 160 35.6
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 2.5e-17 93.6 160 35.6
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 5.6e-17 92.4 168 33.9
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 7.3e-17 92.0 88 51.1
CAN.G505.2 Capsicum annuum HOM05D002660 ORTHO05D003902 9.6e-17 91.7 101 57.4
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 1.6e-16 90.9 128 41.4
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 1.1e-15 88.2 141 38.3
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 1.1e-15 88.2 131 38.9
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.1e-15 88.2 138 36.2
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.1e-15 88.2 138 36.2
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.1e-15 88.2 138 36.2
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.1e-15 88.2 138 36.2
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 4.0e-15 86.3 131 38.2
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 4.0e-15 86.3 127 37.8
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 4.0e-15 86.3 127 37.8
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 4.0e-15 86.3 82 53.7
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 5.3e-15 85.9 139 38.8
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 5.3e-15 85.9 139 38.8
SGA_v2.0_scaffold245G44628 Striga asiatica HOM05D002660 ORTHO05D003902 5.3e-15 85.9 131 38.2
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 6.9e-15 85.5 136 39.0
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 6.9e-15 85.5 136 39.0
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 6.9e-15 85.5 136 39.0
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 6.9e-15 85.5 136 39.0
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 9.0e-15 85.1 136 38.2
ATR0502G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 3.4e-14 83.2 117 39.3
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 3.4e-14 83.2 155 32.3
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 5.8e-14 82.4 75 52.0
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 7.6e-14 82.0 77 48.1
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 7.6e-14 82.0 130 37.7
TAR443G0001 Trochodendron aralioides HOM05D022514 ORTHO05D003902 1.3e-13 81.3 113 38.9
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 1.7e-13 80.9 89 47.2
Gorai.001G162700 Gossypium raimondii HOM05D002660 ORTHO05D003902 3.8e-13 79.7 93 41.9
Gorai.009G406600 Gossypium raimondii HOM05D002660 ORTHO05D003902 3.8e-13 79.7 102 40.2
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.9e-13 79.3 100 40.0
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 1.4e-12 77.8 88 44.3
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 1.4e-12 77.8 87 47.1
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 3.2e-12 76.6 158 34.2
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 7.1e-12 75.5 91 42.9
Psat4g178320 Pisum sativum HOM05D002660 ORTHO05D003902 9.3e-12 75.1 81 48.1
Sc05g0004260 Simmondsia chinensis HOM05D002660 ORTHO05D003902 1.6e-11 74.3 82 46.3
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 2.7e-11 73.6 117 37.6
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 3.5e-11 73.2 91 40.7
Lsat_1_v5_gn_8_124640 Lactuca sativa HOM05D002660 ORTHO05D003902 3.5e-11 73.2 81 46.9
Lsat_1_v5_gn_8_93860 Lactuca sativa HOM05D002660 ORTHO05D003902 3.5e-11 73.2 81 46.9
Nitab4.5_0000172g1850 Nicotiana tabacum HOM05D041395 ORTHO05D033997 3.5e-11 73.2 47 74.5
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 3.5e-11 73.2 67 50.7
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 1.0e-10 71.6 97 38.1
MBI05_g23324_MAGBIO Magnolia biondii HOM05D017124 ORTHO05D017284 1.3e-10 71.2 164 32.9
Sed0020067 Sechium edule HOM05D020557 ORTHO05D011674 1.7e-10 70.9 58 77.6
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 2.3e-10 70.5 108 39.8
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 2.3e-10 70.5 108 39.8
Medtr0212s0050 Medicago truncatula HOM05D002660 ORTHO05D003902 3.0e-10 70.1 73 50.7
Dinv06670 Davidia involucrata HOM05D022514 ORTHO05D003902 5.1e-10 69.3 91 38.5
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 8.7e-10 68.6 78 44.9
Ca_07940_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 1.5e-09 67.8 73 49.3
Ca_08791_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 1.5e-09 67.8 73 49.3
Ca_22174_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 1.5e-09 67.8 73 49.3
PGSC0003DMG400006470 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.5e-09 67.8 101 39.6
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 1.9e-09 67.4 108 39.8
Ca_26184_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 4.3e-09 66.2 73 47.9
MBI03_g45449_MAGBIO Magnolia biondii HOM05D017124 ORTHO05D017284 4.3e-09 66.2 162 32.1
Sc08g0004590 Simmondsia chinensis HOM05D017289 ORTHO05D003902 4.3e-09 66.2 53 64.2
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 5.6e-09 65.9 80 40.0
Peaxi162Scf00611g00057 Petunia axillaris HOM05D002660 ORTHO05D003902 5.6e-09 65.9 97 42.3
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 2.1e-08 63.9 66 50.0
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 2.1e-08 63.9 66 50.0
SalBow7G1147 Salvia bowleyana HOM05D002660 ORTHO05D009845 2.1e-08 63.9 69 46.4
BcaC08g43703 Brassica carinata HOM05D002660 ORTHO05D003902 2.8e-08 63.5 119 37.8
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 2.8e-08 63.5 52 53.8
Sed0024104 Sechium edule HOM05D020557 ORTHO05D011674 3.6e-08 63.2 68 57.4
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 4.8e-08 62.8 93 41.9
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 4.8e-08 62.8 138 33.3
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 6.2e-08 62.4 134 33.6
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 6.2e-08 62.4 134 33.6
HPP92_006535 Vanilla planifolia HOM05D002660 ORTHO05D003902 6.2e-08 62.4 71 42.3
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 1.4e-07 61.2 72 45.8
TPR.G40534 Trifolium pratense HOM05D002660 ORTHO05D003902 1.4e-07 61.2 95 40.0
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 3.1e-07 60.1 41 68.3
Nitab4.5_0000470g0110 Nicotiana tabacum HOM05D010779 ORTHO05D011674 5.3e-07 59.3 55 65.5
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 9.0e-07 58.5 83 38.6
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 9.0e-07 58.5 47 51.1
SGA_v2.0_scaffold601G53131 Striga asiatica HOM05D002660 ORTHO05D003902 1.2e-06 58.2 180 27.8
CsaV3_UNG194490 Cucumis sativus L. HOM05D002660 ORTHO05D003902 2.0e-06 57.4 65 44.6
MBI04_g15067_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.0e-06 57.4 55 54.5
MBI04_g40993_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.0e-06 57.4 55 54.5
SHI02522 Sapria himalayana HOM05D002660 ORTHO05D003902 2.0e-06 57.4 78 37.2
MBI14_g44090_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 3.4e-06 56.6 40 62.5
BraSC77t46647Z Brassica rapa HOM05D002660 ORTHO05D003902 5.8e-06 55.8 111 34.2


User provided reference genes

Program Settings