Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.3e-114 416.4 215 100.0
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 3.5e-54 215.7 199 62.3
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 4.3e-52 208.8 200 59.5
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 2.3e-50 203.0 200 59.0
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 3.1e-50 202.6 199 59.3
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.2e-49 200.7 199 58.8
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.5e-49 200.3 200 58.5
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 3.4e-49 199.1 235 51.9
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 4.4e-49 198.7 199 58.3
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 9.8e-49 197.6 200 58.0
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 9.8e-49 197.6 198 58.1
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 9.8e-49 197.6 197 57.4
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 1.7e-48 196.8 200 57.5
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 1.7e-48 196.8 206 59.2
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 8.3e-48 194.5 199 57.3
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 1.1e-47 194.1 199 56.8
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.1e-47 194.1 190 58.9
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.1e-47 194.1 201 57.2
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 2.4e-47 193.0 199 56.3
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 2.4e-47 193.0 199 56.8
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 4.1e-47 192.2 217 52.5
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 4.1e-47 192.2 194 56.7
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 4.1e-47 192.2 199 56.8
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 5.4e-47 191.8 215 52.6
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 7.0e-47 191.4 237 49.4
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 9.2e-47 191.0 196 57.1
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.7e-46 189.5 215 52.6
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.7e-46 189.5 215 52.6
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 3.5e-46 189.1 192 56.2
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 3.5e-46 189.1 199 55.3
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 7.8e-46 188.0 199 54.8
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 7.8e-46 188.0 192 56.8
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.0e-45 187.6 229 48.0
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.0e-45 187.6 215 51.6
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 1.3e-45 187.2 232 50.0
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.7e-45 186.8 237 47.7
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.7e-45 186.8 194 55.7
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 2.3e-45 186.4 199 54.8
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 3.9e-45 185.7 201 54.2
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 3.9e-45 185.7 193 56.5
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 5.0e-45 185.3 197 55.3
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 6.6e-45 184.9 216 51.9
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 6.6e-45 184.9 192 55.2
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.1e-44 184.1 197 54.8
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 1.5e-44 183.7 193 53.9
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.5e-44 183.7 199 54.8
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 5.6e-44 181.8 197 54.3
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 9.5e-44 181.0 196 54.1
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 9.5e-44 181.0 194 54.1
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 9.5e-44 181.0 237 46.8
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.6e-43 180.3 192 54.7
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.6e-43 180.3 197 53.8
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 1.6e-43 180.3 190 53.7
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 2.1e-43 179.9 197 53.8
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 2.8e-43 179.5 197 54.3
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 2.8e-43 179.5 193 52.8
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 4.7e-43 178.7 199 54.8
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 6.2e-43 178.3 200 53.5
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 6.2e-43 178.3 200 54.0
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.4e-42 177.2 188 54.3
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 2.3e-42 176.4 207 49.3
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 3.1e-42 176.0 193 51.3
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.1e-42 176.0 191 53.9
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 4.0e-42 175.6 195 54.4
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 5.2e-42 175.3 192 51.0
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 6.8e-42 174.9 197 52.8
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 1.2e-41 174.1 230 45.7
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 3.4e-41 172.6 189 54.0
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 4.4e-41 172.2 178 53.9
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.2e-40 169.9 186 53.2
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 4.9e-40 168.7 196 49.5
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 4.9e-40 168.7 179 54.7
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 6.4e-40 168.3 194 50.5
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 3.2e-39 166.0 200 49.0
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 7.1e-39 164.9 200 48.5
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.2e-38 164.1 184 52.7
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.0e-38 161.8 200 50.0
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.6e-37 158.3 182 51.6
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 8.6e-37 157.9 200 47.0
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 1.1e-36 157.5 198 48.0
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.9e-36 156.8 175 54.9
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.6e-35 153.7 170 52.4
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 6.2e-35 151.8 194 50.5
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 1.5e-33 147.1 206 48.1
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 5.8e-33 145.2 182 46.2
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 4.9e-32 142.1 190 44.2
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.5e-28 129.8 192 42.2
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 2.5e-28 129.8 188 43.1
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 3.3e-28 129.4 186 41.4
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 7.3e-28 128.3 196 42.3
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 9.6e-28 127.9 186 42.5
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 9.6e-28 127.9 182 42.3
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.2e-27 127.5 83 77.1
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 2.8e-27 126.3 186 41.9
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 3.6e-27 125.9 194 41.2
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 4.7e-27 125.6 192 40.6
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.1e-26 124.4 187 40.6
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.1e-26 124.4 186 40.9
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.8e-26 123.6 186 41.4
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 2.4e-26 123.2 92 68.5
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 3.1e-26 122.9 192 40.1
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 4.0e-26 122.5 87 69.0
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 6.9e-26 121.7 110 60.0
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 8.9e-26 121.3 195 41.0
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.5e-25 120.6 166 45.8
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 2.0e-25 120.2 95 65.3
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 2.0e-25 120.2 90 70.0
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 5.8e-25 118.6 186 40.3
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 5.8e-25 118.6 186 38.7
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 7.6e-25 118.2 182 38.5
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 9.9e-25 117.9 186 38.7
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 9.9e-25 117.9 186 38.7
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 2.2e-24 116.7 179 40.8
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 6.4e-24 115.2 195 39.5
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 8.4e-24 114.8 78 71.8
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.1e-23 114.4 94 67.0
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.6e-22 110.5 183 39.9
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 2.7e-22 109.8 60 91.7
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.0e-21 107.8 166 43.4
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.3e-21 107.5 184 38.6
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 5.6e-20 102.1 58 87.9
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.6e-19 99.4 69 75.4
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.2e-19 98.6 78 64.1
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 2.4e-18 96.7 226 31.9
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.1e-18 96.3 182 35.7
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 5.3e-18 95.5 226 31.4
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 6.9e-18 95.1 226 31.4
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.4e-17 92.8 195 33.8
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.7e-16 90.5 57 80.7
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 1.7e-16 90.5 57 78.9
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 8.4e-16 88.2 178 34.8
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 8.4e-16 88.2 178 34.8
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 4.2e-15 85.9 76 53.9
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 4.2e-15 85.9 183 33.9
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 6.0e-14 82.0 77 55.8
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 1.8e-13 80.5 67 64.2
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 6.7e-13 78.6 183 31.7
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 1.6e-11 73.9 69 58.0
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.8e-11 73.2 196 31.1
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 4.8e-11 72.4 188 31.4
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 6.9e-10 68.6 183 29.5
Nitab4.5_0001789g0100 Nicotiana tabacum HOM05D005184 ORTHO05D006222 8.4e-08 61.6 50 66.0
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 1.1e-07 61.2 208 25.0
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 4.2e-07 59.3 209 27.3
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 2.1e-06 57.0 45 62.2


User provided reference genes

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