Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000030g0120 Nicotiana tabacum HOM05D000493 ORTHO05D012499 2.6e-52 208.4 102 100.0
Nitab4.5_0000588g0060 Nicotiana tabacum HOM05D000493 ORTHO05D001355 2.5e-34 148.7 93 82.8
Solyc04g082430.3 Solanum lycopersicum HOM05D000493 ORTHO05D001355 2.6e-31 138.7 93 77.4
Sopen04g036020 Solanum pennellii HOM05D000493 ORTHO05D001355 2.6e-31 138.7 93 77.4
PGSC0003DMG400009983 Solanum tuberosum HOM05D000493 ORTHO05D001355 1.1e-29 133.3 94 75.5
CAN.G311.120 Capsicum annuum HOM05D000493 ORTHO05D001355 1.4e-29 132.9 93 75.3
CAN.G480.8 Capsicum annuum HOM05D000493 ORTHO05D001355 1.2e-28 129.8 93 69.9
CAN.G1049.3 Capsicum annuum HOM05D000493 ORTHO05D001355 1.5e-26 122.9 93 66.7
CAN.G54.8 Capsicum annuum HOM05D000493 ORTHO05D012499 1.2e-25 119.8 93 66.7
CAN.G167.8 Capsicum annuum HOM05D000493 ORTHO05D012499 8.0e-25 117.1 93 65.6
Peaxi162Scf00711g00052 Petunia axillaris HOM05D000493 ORTHO05D001355 7.5e-23 110.5 94 69.1
Nitab4.5_0010763g0020 Nicotiana tabacum HOM05D000493 ORTHO05D001355 9.8e-23 110.2 96 64.6
Cc10_g00620 Coffea canephora HOM05D000493 ORTHO05D001355 2.7e-20 102.1 96 56.2
CAN.G1352.23 Capsicum annuum HOM05D000493 ORTHO05D012499 5.9e-20 100.9 75 69.3
Peaxi162Scf00064g01134 Petunia axillaris HOM05D000493 ORTHO05D001355 7.8e-20 100.5 99 55.6
Solyc04g081660.3 Solanum lycopersicum HOM05D000493 ORTHO05D012499 7.8e-20 100.5 90 60.0
CAN.G315.2 Capsicum annuum HOM05D000493 ORTHO05D012499 1.7e-19 99.4 93 59.1
Thecc.08G059900 Theobroma cacao HOM05D000493 ORTHO05D001355 1.1e-18 96.7 96 56.2
Actinidia17045 Actinidia chinensis HOM05D001852 ORTHO05D001989 1.5e-18 96.3 98 54.1
TAR628G1508 Trochodendron aralioides HOM05D000493 ORTHO05D001355 1.5e-18 96.3 87 56.3
Nitab4.5_0000699g0040 Nicotiana tabacum HOM05D000493 ORTHO05D001355 1.9e-18 95.9 96 58.3
Migut.C00388 Erythranthe guttata HOM05D000493 ORTHO05D001355 2.5e-18 95.5 90 55.6
Nitab4.5_0001984g0120 Nicotiana tabacum HOM05D000493 ORTHO05D012499 2.5e-18 95.5 96 59.4
Potri.002G010000 Populus trichocarpa HOM05D000493 ORTHO05D001355 5.6e-18 94.4 87 56.3
Dinv05528 Davidia involucrata HOM05D000493 ORTHO05D001355 7.3e-18 94.0 89 56.2
Oeu007478.1 Olea europaea HOM05D000493 ORTHO05D001355 7.3e-18 94.0 97 55.7
MSTRG.980 Avicennia marina HOM05D000493 ORTHO05D001355 2.1e-17 92.4 94 52.1
TAR376G0690 Trochodendron aralioides HOM05D000493 ORTHO05D001355 3.6e-17 91.7 87 56.3
CAN.G93.54 Capsicum annuum HOM05D000493 ORTHO05D001355 6.1e-17 90.9 63 69.8
Sabra02G0007400 Salix brachista HOM05D000493 ORTHO05D001355 6.1e-17 90.9 87 52.9
Sabra05G0194700 Salix brachista HOM05D000493 ORTHO05D001355 6.1e-17 90.9 96 52.1
Rhsim06G0006700 Rhododendron simsii HOM05D000493 ORTHO05D001355 1.0e-16 90.1 97 52.6
DCAR_022936 Daucus carota HOM05D000493 ORTHO05D001355 1.4e-16 89.7 90 51.1
CAN.G260.2 Capsicum annuum HOM05D000493 ORTHO05D012499 1.8e-16 89.4 51 78.4
Ciclev10001235m.g Citrus clementina HOM05D000493 ORTHO05D001355 1.8e-16 89.4 96 53.1
Duzib116G0113 Durio zibethinus HOM05D000493 ORTHO05D001355 2.3e-16 89.0 96 54.2
Potri.005G251400 Populus trichocarpa HOM05D000493 ORTHO05D001355 2.3e-16 89.0 88 53.4
Rhsim07G0255300 Rhododendron simsii HOM05D000493 ORTHO05D001355 3.0e-16 88.6 85 61.2
Sopen12g031500 Solanum pennellii HOM05D000493 ORTHO05D001355 3.0e-16 88.6 82 59.8
ClCG11G018710 Citrullus lanatus HOM05D000493 ORTHO05D001355 4.0e-16 88.2 88 56.8
PGR083G2581 Punica granatum HOM05D000493 ORTHO05D001355 6.8e-16 87.4 96 51.0
Nn6g31723 Nelumbo nucifera HOM05D000493 ORTHO05D001355 1.2e-15 86.7 96 51.0
QL02p014361 Quercus lobata HOM05D000493 ORTHO05D001355 1.2e-15 86.7 88 52.3
Solyc12g094600.3 Solanum lycopersicum HOM05D000493 ORTHO05D001355 1.5e-15 86.3 82 58.5
Oeu033836.1 Olea europaea HOM05D000493 ORTHO05D001355 2.0e-15 85.9 96 50.0
Atru.chr13.143 Acer truncatum HOM05D000493 ORTHO05D001355 2.6e-15 85.5 87 52.9
Migut.N02955 Erythranthe guttata HOM05D000493 ORTHO05D001355 3.4e-15 85.1 97 51.5
Sopen04g035250 Solanum pennellii HOM05D000493 ORTHO05D012499 3.4e-15 85.1 81 55.6
vmacro21806 Vaccinium macrocarpon HOM05D000493 ORTHO05D001355 3.4e-15 85.1 96 52.1
Manes.05G133500 Manihot esculenta HOM05D000493 ORTHO05D001355 4.4e-15 84.7 85 50.6
Manes.18G004700 Manihot esculenta HOM05D000493 ORTHO05D001355 4.4e-15 84.7 87 51.7
SalBow7G1378 Salvia bowleyana HOM05D000493 ORTHO05D001355 7.5e-15 84.0 96 49.0
CAN.G78.149 Capsicum annuum HOM05D000493 ORTHO05D012499 1.3e-14 83.2 51 74.5
Gohir.D05G256100 Gossypium hirsutum HOM05D000493 ORTHO05D001355 1.3e-14 83.2 96 52.1
Gorai.009G267700 Gossypium raimondii HOM05D000493 ORTHO05D001355 1.3e-14 83.2 96 52.1
Oeu035841.1 Olea europaea HOM05D000493 ORTHO05D001355 2.2e-14 82.4 106 45.3
vmacro03553 Vaccinium macrocarpon HOM05D000493 ORTHO05D001355 2.2e-14 82.4 97 51.5
CAN.G208.21 Capsicum annuum HOM05D000493 ORTHO05D001355 2.9e-14 82.0 90 53.3
Duzib041G0120 Durio zibethinus HOM05D000493 ORTHO05D001355 2.9e-14 82.0 96 49.0
GSVIVG01009895001 Vitis vinifera HOM05D000493 ORTHO05D001355 3.7e-14 81.6 99 47.5
Gohir.A05G254500 Gossypium hirsutum HOM05D000493 ORTHO05D001355 8.3e-14 80.5 96 51.0
CAN.G835.6 Capsicum annuum HOM05D005877 ORTHO05D012499 1.1e-13 80.1 52 71.2
MELO3C017022.2 Cucumis melo HOM05D000493 ORTHO05D001355 1.1e-13 80.1 88 52.3
Sed0000322 Sechium edule HOM05D000493 ORTHO05D001355 1.8e-13 79.3 89 50.6
CAN.G1229.7 Capsicum annuum HOM05D000493 ORTHO05D001355 2.4e-13 79.0 52 69.2
Nn5g30959 Nelumbo nucifera HOM05D000493 ORTHO05D001355 2.4e-13 79.0 98 48.0
CsaV3_4G037240 Cucumis sativus L. HOM05D000493 ORTHO05D001355 4.1e-13 78.2 88 52.3
TWI56G0988 Tripterygium wilfordii HOM05D000493 ORTHO05D001355 5.4e-13 77.8 97 52.6
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 7.0e-13 77.4 93 43.0
SGA_v2.0_scaffold54G19672 Striga asiatica HOM05D000493 ORTHO05D001355 2.7e-12 75.5 84 50.0
CAN.G830.2 Capsicum annuum HOM05D000493 ORTHO05D012499 3.5e-12 75.1 64 59.4
Hma1.2p1_1067F.1_g253820 Hydrangea macrophylla HOM05D000493 ORTHO05D001355 4.6e-12 74.7 84 52.4
Hma1.2p1_1100F.1_g256980 Hydrangea macrophylla HOM05D000493 ORTHO05D001355 4.6e-12 74.7 84 52.4
Hma1.2p1_1100F.1_g256985 Hydrangea macrophylla HOM05D000493 ORTHO05D001355 4.6e-12 74.7 84 52.4
CAN.G1164.23 Capsicum annuum HOM05D000493 ORTHO05D001355 6.0e-12 74.3 44 77.3
AUR62040799 Chenopodium quinoa HOM05D000493 ORTHO05D001355 7.8e-12 73.9 87 44.8
Aqoxy6G01695 Aquilegia oxysepala HOM05D000493 ORTHO05D001355 1.3e-11 73.2 83 48.2
TWI12G0754 Tripterygium wilfordii HOM05D000493 ORTHO05D001355 1.3e-11 73.2 92 50.0
AUR62036858 Chenopodium quinoa HOM05D000493 ORTHO05D001355 1.7e-11 72.8 87 44.8
CAN.G1503.3 Capsicum annuum HOM05D000493 ORTHO05D012499 3.0e-11 72.0 44 75.0
QL11p055884 Quercus lobata HOM05D000493 ORTHO05D001355 1.5e-10 69.7 101 45.5
Sc15g0004400 Simmondsia chinensis HOM05D000493 ORTHO05D001355 1.5e-10 69.7 94 45.7
Gohir.D01G091600 Gossypium hirsutum HOM05D000493 ORTHO05D001355 1.9e-10 69.3 96 45.8
Gorai.002G116700 Gossypium raimondii HOM05D000493 ORTHO05D001355 1.9e-10 69.3 96 45.8
TWI36G1039 Tripterygium wilfordii HOM05D000493 ORTHO05D001355 1.9e-10 69.3 96 47.9
AT1G76310 Arabidopsis thaliana HOM05D000493 ORTHO05D001355 2.5e-10 68.9 87 49.4
Lj4A10G74 Lonicera japonica HOM05D000493 ORTHO05D001355 2.5e-10 68.9 78 52.6
SalBow6G5575 Salvia bowleyana HOM05D000493 ORTHO05D001355 3.3e-10 68.6 96 43.8
SGA_v2.0_scaffold364G49973 Striga asiatica HOM05D000493 ORTHO05D001355 3.3e-10 68.6 98 39.8
BcaB02g07058 Brassica carinata HOM05D000493 ORTHO05D001355 5.6e-10 67.8 88 46.6
Eucgr.F01773 Eucalyptus grandis HOM05D000493 ORTHO05D001355 5.6e-10 67.8 80 48.8
THA.LOC104809782 Tarenaya hassleriana HOM05D000493 ORTHO05D001355 5.6e-10 67.8 97 45.4
A07p41940 Brassica napus HOM05D000493 ORTHO05D001355 9.5e-10 67.0 85 44.7
Solyc03g032190.3 Solanum lycopersicum HOM05D000493 ORTHO05D001355 9.5e-10 67.0 84 46.4
Gohir.A01G105300 Gossypium hirsutum HOM05D000493 ORTHO05D001355 1.6e-09 66.2 96 43.8
Hma1.2p1_0271F.1_g108920 Hydrangea macrophylla HOM05D000493 ORTHO05D001355 1.6e-09 66.2 86 45.3
AL2G36410 Arabidopsis lyrata HOM05D000493 ORTHO05D001355 2.1e-09 65.9 87 48.3
BcaC08g47130 Brassica carinata HOM05D000493 ORTHO05D001355 2.1e-09 65.9 85 50.6
BraA07t31724Z Brassica rapa HOM05D000493 ORTHO05D001355 2.1e-09 65.9 85 44.7
Sp5g31450 Schrenkiella parvula HOM05D000493 ORTHO05D001355 2.8e-09 65.5 87 46.0
Sopen03g006030 Solanum pennellii HOM05D000493 ORTHO05D001355 2.8e-09 65.5 84 46.4
C06p50510 Brassica napus HOM05D000493 ORTHO05D001355 3.6e-09 65.1 85 44.7
ECA238G1355 Erigeron canadensis HOM05D000493 ORTHO05D001355 3.6e-09 65.1 89 46.1
PGSC0003DMG400018674 Solanum tuberosum HOM05D000493 ORTHO05D001355 4.7e-09 64.7 84 46.4
CARHR069870 Cardamine hirsuta HOM05D000493 ORTHO05D001355 6.2e-09 64.3 84 50.0
BolC6t40076H Brassica oleracea HOM05D000493 ORTHO05D001355 8.0e-09 63.9 85 43.5
CAN.G354.20 Capsicum annuum HOM05D000493 ORTHO05D001355 8.0e-09 63.9 84 44.0
COL.COLO4_05225 Corchorus olitorius HOM05D000493 ORTHO05D001355 8.0e-09 63.9 89 46.1
Thhalv10018589m.g Eutrema salsugineum HOM05D000493 ORTHO05D001355 1.1e-08 63.5 87 48.3
BcaC08g45535 Brassica carinata HOM05D000493 ORTHO05D001355 1.4e-08 63.2 87 44.8
C06p32110 Brassica napus HOM05D000493 ORTHO05D001355 1.4e-08 63.2 87 44.8
BolC6t38337H Brassica oleracea HOM05D000493 ORTHO05D001355 1.4e-08 63.2 87 44.8
Carub.0002s2321 Capsella rubella HOM05D000493 ORTHO05D001355 1.4e-08 63.2 88 50.0
MSTRG.22103 Avicennia marina HOM05D000493 ORTHO05D001355 1.8e-08 62.8 98 42.9
Haze_22788 Corylus avellana HOM05D000493 ORTHO05D001355 4.0e-08 61.6 77 49.4
THA.LOC104811466 Tarenaya hassleriana HOM05D000493 ORTHO05D001355 4.0e-08 61.6 99 43.4
CANSAT25G2330 Cannabis sativa HOM05D000493 ORTHO05D001355 5.2e-08 61.2 91 37.4
Ciclev10025564m.g Citrus clementina HOM05D000493 ORTHO05D001355 5.2e-08 61.2 83 44.6
Nitab4.5_0000495g0180 Nicotiana tabacum HOM05D000493 ORTHO05D001355 6.8e-08 60.8 95 43.2
BraA07t30496Z Brassica rapa HOM05D000493 ORTHO05D001355 8.9e-08 60.5 87 43.7
Gorai.003G003000 Gossypium raimondii HOM05D000493 ORTHO05D001355 8.9e-08 60.5 79 45.6
PSO675G2435 Papaver somniferum HOM05D000493 ORTHO05D001355 8.9e-08 60.5 82 40.2
FvH4_2g16590 Fragaria vesca HOM05D000493 ORTHO05D001355 1.2e-07 60.1 91 37.4
FAN24G2540 Fragaria x ananassa HOM05D000493 ORTHO05D001355 1.2e-07 60.1 91 37.4
HanXRQChr14g0427421 Helianthus annuus HOM05D000493 ORTHO05D001355 1.2e-07 60.1 87 40.2
Manes.01G153900 Manihot esculenta HOM05D000493 ORTHO05D001355 1.2e-07 60.1 83 42.2
CiPaw.08G073700 Carya illinoinensis HOM05D000493 ORTHO05D001355 1.5e-07 59.7 76 47.4
Lsat_1_v5_gn_2_3900 Lactuca sativa HOM05D000493 ORTHO05D001355 1.5e-07 59.7 86 40.7
PSO210G5588 Papaver somniferum HOM05D000493 ORTHO05D001355 2.0e-07 59.3 92 40.2
QL11p055581 Quercus lobata HOM05D000493 ORTHO05D001355 2.0e-07 59.3 76 48.7
Actinidia20566 Actinidia chinensis HOM05D000493 ORTHO05D001355 2.6e-07 58.9 78 46.2
PSO541G4939 Papaver somniferum HOM05D000493 ORTHO05D001355 2.6e-07 58.9 83 42.2
PSO761G0550 Papaver somniferum HOM05D000493 ORTHO05D001355 2.6e-07 58.9 88 38.6
Thecc.01G006900 Theobroma cacao HOM05D000493 ORTHO05D001355 2.6e-07 58.9 82 43.9
Aa31LG4G6400 Aethionema arabicum HOM05D000493 ORTHO05D001355 3.4e-07 58.5 85 38.8
Aqoxy5G01034 Aquilegia oxysepala HOM05D000493 ORTHO05D001355 3.4e-07 58.5 92 41.3
A07p28570 Brassica napus HOM05D000493 ORTHO05D001355 3.4e-07 58.5 87 42.5
Duzib147G1019 Durio zibethinus HOM05D000493 ORTHO05D001355 3.4e-07 58.5 82 43.9
FAN27G0456 Fragaria x ananassa HOM05D000493 ORTHO05D001355 3.4e-07 58.5 87 39.1
Hma1.2p1_0507F.1_g168590 Hydrangea macrophylla HOM05D000493 ORTHO05D001355 3.4e-07 58.5 81 42.0
PSO210G4398 Papaver somniferum HOM05D000493 ORTHO05D001355 3.4e-07 58.5 86 39.5
AL9U10600 Arabidopsis lyrata HOM05D000493 ORTHO05D023616 4.4e-07 58.2 87 42.5
DCAR_016774 Daucus carota HOM05D000493 ORTHO05D001355 4.4e-07 58.2 94 41.5
Thhalv10007704m.g Eutrema salsugineum HOM05D000493 ORTHO05D001355 4.4e-07 58.2 96 41.7
PSO782G2331 Papaver somniferum HOM05D000493 ORTHO05D001355 4.4e-07 58.2 88 37.5
PSO541G0279 Papaver somniferum HOM05D000493 ORTHO05D001355 5.8e-07 57.8 93 38.7
Atru.chr3.958 Acer truncatum HOM05D000493 ORTHO05D001355 7.5e-07 57.4 82 43.9
Atru.chr3.970 Acer truncatum HOM05D000493 ORTHO05D001355 7.5e-07 57.4 82 43.9
AT1G20610 Arabidopsis thaliana HOM05D000493 ORTHO05D001355 7.5e-07 57.4 83 44.6
Ah.00g000840 Amaranthus hybridus HOM05D000493 ORTHO05D001355 9.8e-07 57.0 82 39.0
CSS0022716 Camellia sinensis var. sinensis HOM05D000493 ORTHO05D001355 9.8e-07 57.0 88 42.0
CSS0033034 Camellia sinensis var. sinensis HOM05D000493 ORTHO05D001355 9.8e-07 57.0 89 44.9
Cfa007066 Carpinus fangiana HOM05D000493 ORTHO05D001355 9.8e-07 57.0 82 42.7
FAN15G1728 Fragaria x ananassa HOM05D000493 ORTHO05D001355 9.8e-07 57.0 91 36.3
Nitab4.5_0005719g0030 Nicotiana tabacum HOM05D000493 ORTHO05D001355 9.8e-07 57.0 87 41.4
CSS0039866 Camellia sinensis var. sinensis HOM05D000493 ORTHO05D001355 1.7e-06 56.2 88 42.0
Carub.0001s2008 Capsella rubella HOM05D000493 ORTHO05D001355 1.7e-06 56.2 84 42.9
PSO017G7085 Papaver somniferum HOM05D000493 ORTHO05D001355 1.7e-06 56.2 93 39.8
RcHm_v2.0_Chr6g0280651 Rosa chinensis HOM05D000493 ORTHO05D001355 1.7e-06 56.2 92 38.0
Cfa005347 Carpinus fangiana HOM05D000493 ORTHO05D001355 2.2e-06 55.8 51 56.9
Cc07_g11680 Coffea canephora HOM05D000493 ORTHO05D001355 2.2e-06 55.8 102 43.1
Manes.02G112900 Manihot esculenta HOM05D000493 ORTHO05D001355 2.2e-06 55.8 85 41.2
AL1G33530 Arabidopsis lyrata HOM05D000493 ORTHO05D001355 2.9e-06 55.5 82 42.7
Gohir.D03G002800 Gossypium hirsutum HOM05D000493 ORTHO05D001355 2.9e-06 55.5 77 42.9
CAN.G952.6 Capsicum annuum HOM05D000493 ORTHO05D012499 4.9e-06 54.7 32 75.0
ECA246G3696 Erigeron canadensis HOM05D000493 ORTHO05D001355 4.9e-06 54.7 88 39.8
Gohir.A02G177100 Gossypium hirsutum HOM05D000493 ORTHO05D001355 4.9e-06 54.7 77 42.9
Duzib264G0990 Durio zibethinus HOM05D000493 ORTHO05D001355 8.3e-06 53.9 83 42.2


User provided reference genes

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