Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000028g0480 Nicotiana tabacum HOM05D002778 ORTHO05D003112 3.9e-27 124.0 60 100.0
CAN.G837.3 Capsicum annuum HOM05D002778 ORTHO05D003112 2.9e-14 81.3 41 95.1
Sopen07g004320 Solanum pennellii HOM05D002778 ORTHO05D003112 3.7e-14 80.9 41 92.7
MD16G1246800 Malus domestica HOM05D002778 ORTHO05D003112 4.7e-09 63.9 41 70.7
DCAR_018016 Daucus carota HOM05D002778 ORTHO05D003112 1.4e-08 62.4 40 70.0
PGR142G4130 Punica granatum HOM05D002778 ORTHO05D003112 1.4e-08 62.4 38 73.7
Prupe.1G073400 Prunus persica HOM05D002778 ORTHO05D003112 2.3e-08 61.6 38 71.1
RcHm_v2.0_Chr4g0399141 Rosa chinensis HOM05D002778 ORTHO05D003112 2.3e-08 61.6 38 71.1
Eucgr.C00097 Eucalyptus grandis HOM05D002778 ORTHO05D003112 4.0e-08 60.8 35 71.4
FvH4_4g07010 Fragaria vesca HOM05D002778 ORTHO05D003112 4.0e-08 60.8 38 71.1
Potri.018G140500 Populus trichocarpa HOM05D002778 ORTHO05D003112 4.0e-08 60.8 39 71.8
Nitab4.5_0006188g0010 Nicotiana tabacum HOM05D002778 ORTHO05D003112 5.2e-08 60.5 39 69.2
Potri.006G073400 Populus trichocarpa HOM05D002778 ORTHO05D003112 5.2e-08 60.5 39 71.8
Duzib150G0922 Durio zibethinus HOM05D002778 ORTHO05D003112 8.9e-08 59.7 39 66.7
Duzib168G0124 Durio zibethinus HOM05D002778 ORTHO05D003112 1.2e-07 59.3 39 69.2
TPR.G7055 Trifolium pratense HOM05D002778 ORTHO05D003112 1.2e-07 59.3 37 70.3
CANSAT35G1850 Cannabis sativa HOM05D002778 ORTHO05D003112 2.6e-07 58.2 46 56.5
Medtr2g038220 Medicago truncatula HOM05D002778 ORTHO05D003112 2.6e-07 58.2 33 75.8
Peaxi162Scf00046g00230 Petunia axillaris HOM05D002778 ORTHO05D003112 3.4e-07 57.8 41 65.9
PGSC0003DMG400021028 Solanum tuberosum HOM05D002778 ORTHO05D003112 4.4e-07 57.4 32 75.0
Glyma.14G134900 Glycine max HOM05D002778 ORTHO05D003112 5.8e-07 57.0 39 66.7
Gohir.A05G001500 Gossypium hirsutum HOM05D002778 ORTHO05D003112 5.8e-07 57.0 32 78.1
Gohir.D05G001800 Gossypium hirsutum HOM05D002778 ORTHO05D003112 5.8e-07 57.0 32 78.1
Gorai.009G001700 Gossypium raimondii HOM05D002778 ORTHO05D003112 5.8e-07 57.0 32 78.1
Manes.06G017900 Manihot esculenta HOM05D002778 ORTHO05D003112 5.8e-07 57.0 39 64.1
Nn8g40687 Nelumbo nucifera HOM05D002778 ORTHO05D003112 5.8e-07 57.0 39 69.2
Solyc07g008430.2 Solanum lycopersicum HOM05D002778 ORTHO05D003112 5.8e-07 57.0 38 63.2
Sopen07g004330 Solanum pennellii HOM05D002778 ORTHO05D003112 5.8e-07 57.0 38 63.2
Migut.J00787 Erythranthe guttata HOM05D002778 ORTHO05D003112 7.6e-07 56.6 39 66.7
Manes.06G018100 Manihot esculenta HOM05D002778 ORTHO05D003112 7.6e-07 56.6 49 57.1
Thecc.09G191000 Theobroma cacao HOM05D002778 ORTHO05D003112 7.6e-07 56.6 39 66.7
CAN.G1185.1 Capsicum annuum HOM05D002778 ORTHO05D003112 9.9e-07 56.2 32 75.0
Lalb_Chr23g0276751 Lupinus albus HOM05D002778 ORTHO05D003112 9.9e-07 56.2 35 68.6
MD13G1240400 Malus domestica HOM05D002778 ORTHO05D003112 9.9e-07 56.2 37 70.3
Thhalv10016058m.g Eutrema salsugineum HOM05D002778 ORTHO05D003112 1.3e-06 55.8 39 66.7
Lj6g0016516 Lotus japonicus HOM05D002778 ORTHO05D003112 1.3e-06 55.8 35 68.6
PGSC0003DMG400021029 Solanum tuberosum HOM05D002778 ORTHO05D003112 1.7e-06 55.5 38 60.5
TWI75G0683 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 1.7e-06 55.5 39 64.1
Glyma.13G101500 Glycine max HOM05D002778 ORTHO05D003112 2.2e-06 55.1 40 60.0
Glyma.17G058100 Glycine max HOM05D002778 ORTHO05D003112 2.2e-06 55.1 40 60.0
Manes.06G018000 Manihot esculenta HOM05D002778 ORTHO05D003112 2.2e-06 55.1 39 61.5
CSS0015542 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 2.9e-06 54.7 39 59.0
Oeu012391.1 Olea europaea HOM05D002778 ORTHO05D003112 2.9e-06 54.7 36 69.4
PGR102G1539 Punica granatum HOM05D002778 ORTHO05D003112 2.9e-06 54.7 39 61.5
THA.LOC104813502 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 2.9e-06 54.7 39 64.1
TWI31G1116 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 2.9e-06 54.7 39 61.5
AL8G33050 Arabidopsis lyrata HOM05D002778 ORTHO05D003112 3.7e-06 54.3 39 64.1
AT5G57123 Arabidopsis thaliana HOM05D002778 ORTHO05D003112 3.7e-06 54.3 39 64.1
BcaB08g36001 Brassica carinata HOM05D002778 ORTHO05D003112 3.7e-06 54.3 39 64.1
BcaC04g20009 Brassica carinata HOM05D002778 ORTHO05D003112 3.7e-06 54.3 39 64.1
C09p48860 Brassica napus HOM05D002778 ORTHO05D003112 3.7e-06 54.3 39 64.1
BolC9t57733H Brassica oleracea HOM05D002778 ORTHO05D003112 3.7e-06 54.3 39 64.1
Carub.0008s1763 Capsella rubella HOM05D002778 ORTHO05D003112 3.7e-06 54.3 39 64.1
ClCG11G011590 Citrullus lanatus HOM05D002778 ORTHO05D003112 3.7e-06 54.3 42 61.9
Manes.15G098500 Manihot esculenta HOM05D002778 ORTHO05D003112 3.7e-06 54.3 39 59.0
Phvul.001G059600 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 3.7e-06 54.3 39 61.5
SalBow4G0971 Salvia bowleyana HOM05D002778 ORTHO05D003112 3.7e-06 54.3 38 63.2
BcaB01g04445 Brassica carinata HOM05D002778 ORTHO05D003112 4.9e-06 53.9 39 64.1
BcaC01g06467 Brassica carinata HOM05D002778 ORTHO05D003112 4.9e-06 53.9 39 64.1
BcaC01g06468 Brassica carinata HOM05D002778 ORTHO05D003112 4.9e-06 53.9 39 64.1
BcaNung05127 Brassica carinata HOM05D002778 ORTHO05D003112 4.9e-06 53.9 39 64.1
A03p12970 Brassica napus HOM05D002778 ORTHO05D003112 4.9e-06 53.9 39 64.1
A10p14450 Brassica napus HOM05D002778 ORTHO05D003112 4.9e-06 53.9 39 64.1
C03p15140 Brassica napus HOM05D002778 ORTHO05D003112 4.9e-06 53.9 39 64.1
BraA03t10605Z Brassica rapa HOM05D002778 ORTHO05D003112 4.9e-06 53.9 39 64.1
BraA10t43536Z Brassica rapa HOM05D002778 ORTHO05D003112 4.9e-06 53.9 39 64.1
COL.COLO4_19026 Corchorus olitorius HOM05D002778 ORTHO05D003112 4.9e-06 53.9 39 61.5
DCAR_018017 Daucus carota HOM05D002778 ORTHO05D003112 4.9e-06 53.9 41 61.0
Migut.J00786 Erythranthe guttata HOM05D002778 ORTHO05D003112 4.9e-06 53.9 36 61.1
Hma1.2p1_1961F.1_g309120 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 4.9e-06 53.9 39 59.0
Hma1.2p1_2332F.1_g320100 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 4.9e-06 53.9 39 59.0
MBI16_g36963_MAGBIO Magnolia biondii HOM05D002778 ORTHO05D003112 4.9e-06 53.9 39 64.1
Manes.14G162900 Manihot esculenta HOM05D002778 ORTHO05D003112 4.9e-06 53.9 35 65.7
Medtr4g127190 Medicago truncatula HOM05D002778 ORTHO05D003112 4.9e-06 53.9 39 59.0
THA.LOC104811766 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 4.9e-06 53.9 39 64.1
TPR.G5389 Trifolium pratense HOM05D002778 ORTHO05D003112 4.9e-06 53.9 39 59.0
Ca_21261_v3 Cicer arietinum L. HOM05D002778 ORTHO05D003112 6.4e-06 53.5 37 62.2
Peaxi162Scf00046g00231 Petunia axillaris HOM05D002778 ORTHO05D003112 6.4e-06 53.5 41 63.4
Solyc02g081560.1 Solanum lycopersicum HOM05D002778 ORTHO05D003112 6.4e-06 53.5 39 64.1
TWI36G0848 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 6.4e-06 53.5 39 59.0
BolC3t13955H Brassica oleracea HOM05D002778 ORTHO05D003112 8.4e-06 53.1 39 64.1
CAN.G809.78 Capsicum annuum HOM05D002778 ORTHO05D003112 8.4e-06 53.1 39 61.5
Glyma.17G197800 Glycine max HOM05D002778 ORTHO05D003112 8.4e-06 53.1 39 61.5
MD15G1107300 Malus domestica HOM05D002778 ORTHO05D003112 8.4e-06 53.1 38 65.8
Manes.03G079400 Manihot esculenta HOM05D002778 ORTHO05D003112 8.4e-06 53.1 39 59.0


User provided reference genes

Program Settings