Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000028g0100 Nicotiana tabacum HOM05D000040 ORTHO05D004411 5.6e-33 143.7 71 100.0
Nitab4.5_0000491g0050 Nicotiana tabacum HOM05D000040 ORTHO05D004411 9.5e-25 116.3 61 90.2
Nitab4.5_0009703g0030 Nicotiana tabacum HOM05D000040 ORTHO05D004411 2.8e-24 114.8 61 90.2
Nitab4.5_0000949g0030 Nicotiana tabacum HOM05D000040 ORTHO05D004411 4.4e-22 107.5 61 83.6
Nitab4.5_0002738g0090 Nicotiana tabacum HOM05D000040 ORTHO05D004411 1.7e-21 105.5 64 75.0
Nitab4.5_0000221g0120 Nicotiana tabacum HOM05D000040 ORTHO05D004411 3.7e-21 104.4 61 77.0
Peaxi162Scf00324g00011 Petunia axillaris HOM05D000040 ORTHO05D004411 4.1e-20 100.9 61 78.7
Solyc07g054650.1 Solanum lycopersicum HOM05D000040 ORTHO05D004411 9.2e-20 99.8 61 77.0
Peaxi162Scf00324g00113 Petunia axillaris HOM05D000040 ORTHO05D004411 7.8e-19 96.7 61 72.1
Nitab4.5_0000414g0030 Nicotiana tabacum HOM05D000040 ORTHO05D004411 8.9e-15 83.2 55 70.9
Migut.J01527 Erythranthe guttata HOM05D000040 ORTHO05D004411 1.1e-09 66.2 61 49.2
Sp4g02840 Schrenkiella parvula HOM05D000040 ORTHO05D004411 1.1e-09 66.2 60 48.3
Ciclev10010455m.g Citrus clementina HOM05D000040 ORTHO05D004411 5.6e-09 63.9 61 47.5
QL09p044087 Quercus lobata HOM05D000040 ORTHO05D004411 7.3e-09 63.5 59 52.5
AL4G13980 Arabidopsis lyrata HOM05D000040 ORTHO05D004411 1.2e-08 62.8 60 48.3
Rhsim11G0054600 Rhododendron simsii HOM05D000040 ORTHO05D004411 2.1e-08 62.0 62 48.4
CARHR184620 Cardamine hirsuta HOM05D000040 ORTHO05D004411 4.7e-08 60.8 60 46.7
Eucgr.C00126 Eucalyptus grandis HOM05D000040 ORTHO05D004411 4.7e-08 60.8 66 47.0
QL09p044227 Quercus lobata HOM05D000040 ORTHO05D004411 4.7e-08 60.8 61 47.5
BcaB06g27949 Brassica carinata HOM05D000040 ORTHO05D004411 6.2e-08 60.5 60 45.0
Migut.J01526 Erythranthe guttata HOM05D000040 ORTHO05D004411 6.2e-08 60.5 67 41.8
Atru.chr7.415 Acer truncatum HOM05D000040 ORTHO05D004411 8.1e-08 60.1 63 39.7
Thhalv10000692m.g Eutrema salsugineum HOM05D000040 ORTHO05D004411 8.1e-08 60.1 60 46.7
AT2G23945 Arabidopsis thaliana HOM05D000040 ORTHO05D004411 1.1e-07 59.7 58 48.3
BraA04t17441Z Brassica rapa HOM05D000040 ORTHO05D004411 1.1e-07 59.7 60 45.0
Carub.0007s1062 Capsella rubella HOM05D000040 ORTHO05D004411 1.1e-07 59.7 62 38.7
QL09p044169 Quercus lobata HOM05D000040 ORTHO05D004411 1.1e-07 59.7 60 51.7
QL09p044223 Quercus lobata HOM05D000040 ORTHO05D004411 1.1e-07 59.7 59 45.8
Cpa.g.sc95.20 Carica papaya HOM05D000040 ORTHO05D004411 1.4e-07 59.3 68 41.2
Rhsim11G0054000 Rhododendron simsii HOM05D000040 ORTHO05D004411 1.4e-07 59.3 62 46.8
COL.COLO4_36866 Corchorus olitorius HOM05D000178 ORTHO05D001582 1.8e-07 58.9 61 42.6
Sp7g27830 Schrenkiella parvula HOM05D000040 ORTHO05D004411 1.8e-07 58.9 55 45.5
AL7G22210 Arabidopsis lyrata HOM05D000040 ORTHO05D004411 2.4e-07 58.5 62 38.7
BcaC02g08516 Brassica carinata HOM05D000040 ORTHO05D004411 2.4e-07 58.5 60 43.3
A04p18300 Brassica napus HOM05D000040 ORTHO05D004411 2.4e-07 58.5 60 43.3
C04p53530 Brassica napus HOM05D000040 ORTHO05D004411 2.4e-07 58.5 60 43.3
BolC4t26906H Brassica oleracea HOM05D000040 ORTHO05D004411 2.4e-07 58.5 60 43.3
Glyma.02G207600 Glycine max HOM05D000040 ORTHO05D004411 2.4e-07 58.5 62 43.5
TWI32G0816 Tripterygium wilfordii HOM05D000040 ORTHO05D004411 3.1e-07 58.2 59 42.4
Ciclev10010459m.g Citrus clementina HOM05D000040 ORTHO05D004411 4.0e-07 57.8 68 38.2
DCAR_017417 Daucus carota HOM05D000040 ORTHO05D000267 4.0e-07 57.8 68 45.6
Lj4g0010597 Lotus japonicus HOM05D000040 ORTHO05D004411 4.0e-07 57.8 67 40.3
GSVIVG01010876001 Vitis vinifera HOM05D000040 ORTHO05D004411 4.0e-07 57.8 61 44.3
Aa31LG2G7290 Aethionema arabicum HOM05D000040 ORTHO05D000267 5.2e-07 57.4 57 52.6
AT4G30030 Arabidopsis thaliana HOM05D000040 ORTHO05D004411 5.2e-07 57.4 62 38.7
arahy.Tifrunner.gnm1.ann1.3JTE6T Arachis hypogaea HOM05D000040 ORTHO05D004411 5.2e-07 57.4 65 41.5
Ciclev10033403m.g Citrus clementina HOM05D000040 ORTHO05D004411 6.8e-07 57.0 62 43.5
Migut.K01202 Erythranthe guttata HOM05D000040 ORTHO05D000267 6.8e-07 57.0 55 52.7
Hma1.2p1_0186F.1_g081680 Hydrangea macrophylla HOM05D000040 ORTHO05D000267 6.8e-07 57.0 67 47.8
Lj6g0001499 Lotus japonicus HOM05D000040 ORTHO05D004411 6.8e-07 57.0 61 44.3
Rhsim11G0054700 Rhododendron simsii HOM05D000040 ORTHO05D004411 6.8e-07 57.0 62 43.5
Aa31LG7G12960 Aethionema arabicum HOM05D000040 ORTHO05D004411 8.9e-07 56.6 60 40.0
C01p09050 Brassica napus HOM05D000040 ORTHO05D004411 8.9e-07 56.6 64 37.5
BolC1t00896H Brassica oleracea HOM05D000040 ORTHO05D004411 8.9e-07 56.6 64 37.5
DCAR_013067 Daucus carota HOM05D000040 ORTHO05D000267 8.9e-07 56.6 58 50.0
Duzib168G2409 Durio zibethinus HOM05D000040 ORTHO05D004411 8.9e-07 56.6 61 44.3
Thecc.09G157400 Theobroma cacao HOM05D000040 ORTHO05D004411 8.9e-07 56.6 61 44.3
BcaC06g31197 Brassica carinata HOM05D000040 ORTHO05D000267 1.2e-06 56.2 57 52.6
CSS0005485 Camellia sinensis var. sinensis HOM05D000040 ORTHO05D000267 1.2e-06 56.2 57 47.4
CSS0040582 Camellia sinensis var. sinensis HOM05D000040 ORTHO05D000267 1.2e-06 56.2 57 47.4
Carub.0004s0311 Capsella rubella HOM05D000040 ORTHO05D004411 1.2e-06 56.2 60 43.3
CAN.G1156.41 Capsicum annuum HOM05D000040 ORTHO05D000267 1.2e-06 56.2 67 46.3
Oeu050107.1 Olea europaea HOM05D000040 ORTHO05D000267 1.2e-06 56.2 57 52.6
QL09p044042 Quercus lobata HOM05D000040 ORTHO05D004411 1.2e-06 56.2 57 49.1
AT2G03200 Arabidopsis thaliana HOM05D000040 ORTHO05D000267 1.5e-06 55.8 57 52.6
Dinv27327 Davidia involucrata HOM05D000040 ORTHO05D000267 1.5e-06 55.8 57 52.6
AL5G12850 Arabidopsis lyrata HOM05D000040 ORTHO05D000267 2.0e-06 55.5 57 52.6
Cpa.g.sc66.118 Carica papaya HOM05D003913 ORTHO05D004411 2.0e-06 55.5 56 46.4
Ciclev10033845m.g Citrus clementina HOM05D000040 ORTHO05D004411 2.0e-06 55.5 56 44.6
Migut.L00257 Erythranthe guttata HOM05D000040 ORTHO05D000267 2.0e-06 55.5 55 50.9
Eucgr.H05072 Eucalyptus grandis HOM05D000040 ORTHO05D000267 2.0e-06 55.5 57 50.9
THA.LOC104819569 Tarenaya hassleriana HOM05D000040 ORTHO05D000267 2.0e-06 55.5 57 50.9
BcaC04g21499 Brassica carinata HOM05D000040 ORTHO05D000267 2.6e-06 55.1 57 49.1
C09p31100 Brassica napus HOM05D000040 ORTHO05D000267 2.6e-06 55.1 57 49.1
COL.COLO4_10075 Corchorus olitorius HOM05D000040 ORTHO05D004411 2.6e-06 55.1 61 39.3
Lsat_1_v5_gn_1_103840 Lactuca sativa HOM05D000261 ORTHO05D000566 2.6e-06 55.1 60 51.7
Sp2g14130 Schrenkiella parvula HOM05D000040 ORTHO05D000267 2.6e-06 55.1 57 52.6
Thecc.09G156400 Theobroma cacao HOM05D000040 ORTHO05D004411 2.6e-06 55.1 60 41.7
Thhalv10004149m.g Eutrema salsugineum HOM05D000040 ORTHO05D000267 3.4e-06 54.7 57 49.1
Medtr3g097150 Medicago truncatula HOM05D000040 ORTHO05D000267 3.4e-06 54.7 57 52.6
Psat5g058200 Pisum sativum HOM05D000040 ORTHO05D000267 3.4e-06 54.7 57 52.6
TWI75G0767 Tripterygium wilfordii HOM05D000040 ORTHO05D000267 3.4e-06 54.7 59 49.2
ATR1096G019 Amborella trichopoda HOM05D000040 ORTHO05D000267 4.4e-06 54.3 58 48.3
Solyc05g056450.3 Solanum lycopersicum HOM05D000040 ORTHO05D000267 4.4e-06 54.3 59 50.8
THA.LOC104814661 Tarenaya hassleriana HOM05D000040 ORTHO05D004411 4.4e-06 54.3 65 40.0
arahy.Tifrunner.gnm1.ann1.DI51MF Arachis hypogaea HOM05D000040 ORTHO05D004411 5.8e-06 53.9 65 38.5
BcaB07g30681 Brassica carinata HOM05D000040 ORTHO05D000267 5.8e-06 53.9 57 47.4
Migut.J01519 Erythranthe guttata HOM05D000040 ORTHO05D004411 5.8e-06 53.9 58 43.1
Migut.J01520 Erythranthe guttata HOM05D000040 ORTHO05D017232 5.8e-06 53.9 58 43.1
Eucgr.H03635 Eucalyptus grandis HOM05D000040 ORTHO05D004411 5.8e-06 53.9 60 41.7
Lsat_1_v5_gn_0_2320 Lactuca sativa HOM05D000261 ORTHO05D000566 5.8e-06 53.9 61 45.9
PGSC0003DMG400023324 Solanum tuberosum HOM05D000040 ORTHO05D000267 5.8e-06 53.9 59 50.8
SGA_v2.0_scaffold69G23232 Striga asiatica HOM05D000040 ORTHO05D004411 5.8e-06 53.9 69 34.8
THA.LOC104814718 Tarenaya hassleriana HOM05D000040 ORTHO05D004411 5.8e-06 53.9 59 39.0
THA.LOC104814719 Tarenaya hassleriana HOM05D000040 ORTHO05D004411 5.8e-06 53.9 62 37.1
TWI32G1092 Tripterygium wilfordii HOM05D000040 ORTHO05D004411 5.8e-06 53.9 59 40.7
VMungo1309G1254 Vigna mungo HOM05D000040 ORTHO05D004411 5.8e-06 53.9 65 38.5
A09p24220 Brassica napus HOM05D000040 ORTHO05D000267 7.6e-06 53.5 57 47.4
BolC9t55967H Brassica oleracea HOM05D000040 ORTHO05D000267 7.6e-06 53.5 57 47.4
BraA09t38019Z Brassica rapa HOM05D000040 ORTHO05D000267 7.6e-06 53.5 57 47.4
AUR62006919 Chenopodium quinoa HOM05D000040 ORTHO05D000267 7.6e-06 53.5 57 50.9
Ca_17009_v3 Cicer arietinum L. HOM05D000040 ORTHO05D000267 7.6e-06 53.5 57 54.4
THA.LOC104819958 Tarenaya hassleriana HOM05D000040 ORTHO05D004411 7.6e-06 53.5 60 40.0
Thecc.09G183900 Theobroma cacao HOM05D000040 ORTHO05D004411 7.6e-06 53.5 61 41.0
TAR625G0408 Trochodendron aralioides HOM05D000040 ORTHO05D004411 7.6e-06 53.5 60 43.3
A01p08080 Brassica napus HOM05D000040 ORTHO05D004411 9.9e-06 53.1 64 35.9
A06p43270 Brassica napus HOM05D000040 ORTHO05D000267 9.9e-06 53.1 57 50.9
BraA01t00753Z Brassica rapa HOM05D000040 ORTHO05D004411 9.9e-06 53.1 64 35.9
BraA06t27213Z Brassica rapa HOM05D000040 ORTHO05D000267 9.9e-06 53.1 57 50.9
Ciclev10010016m.g Citrus clementina HOM05D000040 ORTHO05D004411 9.9e-06 53.1 61 41.0
Lj7P339T19 Lonicera japonica HOM05D000040 ORTHO05D000267 9.9e-06 53.1 68 41.2
Potri.006G179500 Populus trichocarpa HOM05D000040 ORTHO05D004411 9.9e-06 53.1 65 38.5
TWI32G0630 Tripterygium wilfordii HOM05D000040 ORTHO05D004411 9.9e-06 53.1 59 40.7


User provided reference genes

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