Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 0.0e+00 2239.2 1135 100.0
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 0.0e+00 2064.3 1142 93.0
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 0.0e+00 1553.5 1172 71.1
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 0.0e+00 1493.4 1519 56.9
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 0.0e+00 1469.9 1519 56.3
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 0.0e+00 1374.0 1430 56.9
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 1.0e-184 651.7 1229 38.6
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 2.0e-180 637.5 1236 36.7
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 2.2e-176 624.0 1300 35.5
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 6.5e-176 622.5 1309 36.1
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 2.3e-173 614.0 1297 34.6
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 1.7e-171 607.8 1305 35.5
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 1.4e-170 604.7 1252 34.7
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 1.2e-169 601.7 1347 33.4
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 4.5e-169 599.7 1262 35.7
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 1.0e-168 598.6 1207 36.0
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 3.7e-163 580.1 1188 34.4
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 2.4e-162 577.4 1290 34.6
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 3.1e-162 577.0 1272 34.2
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 2.3e-157 560.8 1272 33.6
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 3.0e-157 560.5 1300 33.6
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 3.5e-153 547.0 1219 34.9
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 3.5e-153 547.0 1294 35.5
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 7.8e-153 545.8 1390 31.7
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 3.9e-152 543.5 1208 34.0
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 1.2e-150 538.5 1321 33.2
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 2.8e-150 537.3 1282 34.0
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 4.7e-150 536.6 1333 32.7
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 3.7e-147 526.9 1181 32.9
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 4.9e-147 526.6 1325 32.8
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 3.5e-145 520.4 1304 33.0
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 1.0e-144 518.8 1185 32.9
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 1.0e-144 518.8 1439 30.9
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 1.4e-141 508.4 1226 32.0
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.5e-140 505.0 1331 31.7
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 4.4e-140 503.4 1296 31.9
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 4.1e-138 496.9 1308 32.4
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 9.2e-138 495.7 1195 32.0
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 2.7e-137 494.2 1326 31.4
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 3.5e-137 493.8 1329 32.9
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 1.3e-136 491.9 1244 32.2
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 5.1e-136 490.0 1239 33.3
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 1.6e-134 485.0 1180 33.4
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 1.4e-133 481.9 1246 31.7
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 5.2e-133 479.9 1377 30.8
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 8.9e-133 479.2 1226 30.7
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 1.2e-132 478.8 1247 31.8
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 1.7e-131 474.9 1279 32.1
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 2.9e-131 474.2 1263 32.2
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 6.4e-131 473.0 1368 30.9
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 1.9e-130 471.5 1261 32.0
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 3.9e-128 463.8 1261 30.7
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 1.9e-127 461.5 1398 30.0
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 2.5e-127 461.1 1240 30.5
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 2.5e-127 461.1 1226 31.3
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 5.6e-127 459.9 1287 30.4
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 1.2e-124 452.2 1255 31.0
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 5.8e-124 449.9 1253 30.2
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 7.6e-124 449.5 1171 32.0
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 1.3e-123 448.7 1245 29.2
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 2.2e-123 448.0 1291 30.4
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 2.9e-123 447.6 1205 30.9
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 6.4e-123 446.4 1327 29.5
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 6.4e-123 446.4 1480 28.9
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 5.4e-122 443.4 1331 29.3
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 5.4e-122 443.4 1331 29.3
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 1.2e-121 442.2 1342 29.1
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 1.3e-120 438.7 1327 30.7
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 1.7e-120 438.3 1322 29.3
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 3.3e-119 434.1 1354 29.0
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 5.6e-119 433.3 1269 30.6
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 8.1e-118 429.5 1235 30.7
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 2.9e-115 421.0 1593 28.1
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 1.2e-113 415.6 1199 31.1
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 1.9e-111 408.3 1285 29.3
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 1.4e-106 392.1 1181 30.2
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 6.7e-104 383.3 1176 28.6
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 1.1e-103 382.5 1223 28.7
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 7.4e-103 379.8 1236 29.8
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 5.8e-100 370.2 1545 26.9
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.6e-97 362.1 1178 28.9
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 2.3e-96 358.2 899 30.5
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.6e-94 352.1 934 30.7
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 5.3e-93 347.1 1348 27.9
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 1.5e-92 345.5 1152 29.3
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 3.8e-91 340.9 1056 30.2
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 8.4e-91 339.7 913 33.2
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.1e-90 339.3 913 33.3
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 7.9e-89 333.2 972 30.2
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 5.1e-88 330.5 1154 28.0
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 4.3e-87 327.4 756 34.4
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 9.0e-85 319.7 623 34.7
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 1.2e-84 319.3 1231 26.4
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 3.2e-82 311.2 1203 26.2
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 2.5e-79 301.6 1242 26.7
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 3.7e-78 297.7 503 41.6
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 4.7e-73 280.8 752 31.1
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 8.2e-70 270.0 525 38.1
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 2.6e-68 265.0 1223 25.8
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 7.5e-63 246.9 356 40.4
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 7.7e-60 236.9 370 38.6
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 5.0e-59 234.2 205 60.0
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 8.5e-59 233.4 363 43.0
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 7.2e-58 230.3 205 58.5
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 8.3e-54 216.9 270 43.7
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 1.8e-53 215.7 276 42.4
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 2.7e-52 211.8 440 35.9
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.2e-49 203.0 265 45.7
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 8.6e-43 180.3 108 76.9
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 7.3e-42 177.2 539 26.7
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 1.2e-36 159.8 216 40.3
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 3.5e-36 158.3 108 68.5
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 1.1e-34 153.3 116 63.8
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 1.3e-30 139.8 141 46.8
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 6.0e-28 131.0 152 44.7
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 8.6e-27 127.1 90 68.9
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 4.3e-26 124.8 176 41.5
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 2.1e-25 122.5 295 31.2
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 6.2e-25 120.9 82 67.1
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.9e-21 109.4 76 68.4
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 3.5e-20 105.1 66 69.7
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 7.8e-20 104.0 1133 20.0
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 5.6e-18 97.8 65 66.2
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.6e-17 96.3 65 64.6
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 1.8e-16 92.8 80 55.0
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 6.8e-16 90.9 84 53.6
SEGI_38362 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 3.5e-12 78.6 131 33.6
SHI10796 Sapria himalayana HOM05D004942 ORTHO05D005687 3.0e-11 75.5 141 35.5
AagrBONN_evm.TU.Sc2ySwM_362.1676 Anthoceros agrestis HOM05D004942 ORTHO05D005687 4.3e-10 71.6 391 20.7
Eucgr.G02429 Eucalyptus grandis HOM05D004942 ORTHO05D005687 3.6e-09 68.6 62 51.6
Actinidia27213 Actinidia chinensis HOM05D004942 ORTHO05D005687 3.1e-08 65.5 137 35.8
MCO07G070 Micromonas commoda HOM05D004942 ORTHO05D005687 2.0e-07 62.8 123 27.6
Cc00_g10020 Coffea canephora HOM05D000590 ORTHO05D005739 3.4e-07 62.0 142 31.7
Lj3C343G2 Lonicera japonica HOM05D000590 ORTHO05D005739 2.9e-06 58.9 134 29.9
Sed0026193 Sechium edule HOM05D000590 ORTHO05D005739 3.8e-06 58.5 166 31.3


User provided reference genes

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