Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.9e-210 736.1 526 100.0
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.2e-187 659.4 526 92.2
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 3.7e-166 589.0 533 80.5
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 2.0e-143 513.5 535 66.4
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 1.2e-137 494.2 535 65.4
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 2.4e-133 479.9 535 66.2
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 3.2e-133 479.6 535 65.6
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 6.8e-120 435.3 547 64.7
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 4.9e-118 429.1 548 61.1
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 3.9e-115 419.5 543 62.8
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 2.4e-112 410.2 543 67.6
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.4e-111 406.4 546 61.0
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 9.9e-111 404.8 545 66.4
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 7.1e-109 398.7 545 56.5
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 7.1e-109 398.7 556 58.8
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 7.1e-109 398.7 548 62.8
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 9.3e-109 398.3 545 58.9
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 1.6e-108 397.5 551 58.1
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 2.7e-108 396.7 547 58.9
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 4.6e-108 396.0 549 58.3
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 4.6e-108 396.0 548 58.6
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 4.6e-108 396.0 585 56.6
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 6.0e-108 395.6 541 59.1
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 3.0e-107 393.3 547 57.8
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.5e-106 390.2 543 64.6
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 5.6e-106 389.0 540 59.8
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 5.6e-106 389.0 544 59.7
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.3e-105 387.9 551 60.6
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.1e-105 387.1 551 60.6
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 4.8e-105 386.0 555 58.7
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 4.8e-105 386.0 545 58.9
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.1e-104 384.8 535 59.3
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 6.9e-104 382.1 544 54.4
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 9.0e-104 381.7 544 57.2
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 2.6e-103 380.2 555 64.9
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 5.8e-103 379.0 548 59.5
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 9.9e-103 378.3 547 58.3
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 2.9e-102 376.7 549 60.5
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 3.8e-102 376.3 549 58.7
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 4.9e-102 375.9 547 56.5
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 6.4e-102 375.6 540 58.1
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 1.4e-101 374.4 550 56.4
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 3.2e-101 373.2 553 57.3
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 5.5e-101 372.5 551 56.1
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 9.3e-101 371.7 544 58.1
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 1.2e-100 371.3 564 55.9
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 6.0e-100 369.0 552 58.3
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 1.8e-99 367.5 546 58.8
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 3.9e-99 366.3 535 53.3
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 3.9e-99 366.3 550 64.9
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 8.7e-99 365.2 549 58.7
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 8.7e-99 365.2 546 59.0
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 1.1e-98 364.8 546 56.0
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.1e-98 364.8 569 55.9
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 1.1e-98 364.8 563 55.4
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 5.6e-98 362.5 546 59.7
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 1.3e-97 361.3 550 58.0
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 1.6e-97 360.9 555 55.7
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 2.1e-97 360.5 544 61.6
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.1e-96 358.2 541 58.6
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 1.1e-96 358.2 541 58.6
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.4e-96 357.8 577 48.2
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 1.4e-96 357.8 546 55.3
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 1.4e-96 357.8 547 61.6
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 1.8e-96 357.5 556 57.9
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 2.4e-96 357.1 549 58.5
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 4.0e-96 356.3 518 62.2
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 1.5e-95 354.4 560 52.5
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 2.0e-95 354.0 545 56.3
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 5.8e-95 352.4 548 57.3
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 2.2e-94 350.5 555 53.9
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 2.2e-94 350.5 575 57.0
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 8.4e-94 348.6 556 53.4
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 1.1e-93 348.2 538 59.3
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 5.5e-93 345.9 553 53.5
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.9e-90 337.4 543 55.8
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 1.9e-90 337.4 538 59.3
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 5.7e-90 335.9 544 63.4
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 7.4e-90 335.5 545 55.6
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 9.6e-90 335.1 559 54.7
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 2.4e-88 330.5 549 53.6
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 7.6e-87 325.5 555 49.9
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 2.9e-86 323.6 544 55.3
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 5.0e-86 322.8 550 53.6
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 1.1e-85 321.6 555 59.3
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 9.3e-85 318.5 545 53.9
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 1.6e-84 317.8 593 51.1
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 1.6e-84 317.8 549 55.4
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 1.6e-84 317.8 549 57.0
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.0e-83 315.1 549 57.7
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 1.9e-82 310.8 544 56.6
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 2.5e-82 310.5 484 59.7
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 2.4e-80 303.9 549 57.7
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 5.9e-79 299.3 552 49.3
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 2.2e-78 297.4 544 54.8
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 3.8e-78 296.6 548 54.4
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 5.0e-78 296.2 553 53.0
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 2.5e-77 293.9 541 52.1
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 2.5e-77 293.9 543 56.4
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 2.7e-76 290.4 541 57.1
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.7e-76 290.4 224 78.1
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 5.7e-74 282.7 552 49.8
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 9.7e-74 282.0 555 47.4
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 1.3e-73 281.6 582 47.3
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 6.9e-72 275.8 550 48.7
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 2.6e-71 273.9 552 49.5
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 5.9e-71 272.7 585 50.6
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 5.0e-70 269.6 565 47.1
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 1.1e-69 268.5 460 55.4
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 1.4e-69 268.1 468 54.3
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.2e-68 265.0 282 68.1
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.2e-68 265.0 206 72.8
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 2.7e-68 263.8 549 49.5
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.7e-68 263.1 370 59.5
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 7.9e-68 262.3 384 47.1
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 2.0e-63 247.7 606 47.0
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 2.5e-61 240.7 154 81.2
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 2.1e-60 237.7 505 49.3
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 6.7e-59 232.6 478 53.1
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 3.5e-55 220.3 174 67.2
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 5.0e-54 216.5 553 44.7
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.3e-49 201.8 523 39.0
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 2.2e-49 201.1 165 69.1
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.2e-47 195.3 319 51.1
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 1.4e-43 181.8 436 48.4
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 6.6e-38 162.9 283 55.5
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 2.2e-33 147.9 122 67.2
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 4.1e-32 143.7 268 53.0
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 2.5e-29 134.4 114 67.5
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 3.6e-28 130.6 104 72.1
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 2.3e-27 127.9 121 64.5
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 6.8e-27 126.3 539 37.8
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 5.8e-26 123.2 109 64.2
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 7.5e-26 122.9 249 50.2
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 9.8e-26 122.5 74 81.1
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 3.2e-24 117.5 81 67.9
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 9.2e-24 115.9 105 66.7
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 1.3e-17 95.5 147 41.5
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 5.4e-16 90.1 96 58.3
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.9e-14 84.0 64 67.2
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 2.8e-12 77.8 103 49.5
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 4.7e-12 77.0 73 67.1
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 4.7e-12 77.0 73 67.1
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.4e-11 75.5 46 82.6
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 1.5e-10 72.0 75 57.3
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 9.9e-10 69.3 86 50.0
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 6.4e-09 66.6 110 47.3
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 1.4e-08 65.5 58 63.8
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.6e-07 62.0 110 72.7
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 3.5e-07 60.8 158 34.2


User provided reference genes

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