Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 4.5e-150 534.6 287 100.0
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.2e-137 493.4 287 90.6
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 1.7e-133 479.6 289 84.8
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 2.3e-117 426.0 283 78.8
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 1.3e-109 400.2 316 70.9
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 2.8e-107 392.5 282 73.0
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 4.7e-107 391.7 282 73.0
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 8.9e-106 387.5 257 78.6
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 4.4e-105 385.2 302 69.9
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 7.6e-105 384.4 301 69.4
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 4.2e-103 378.6 215 85.1
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 4.2e-103 378.6 246 78.0
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 7.1e-103 377.9 285 70.9
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 1.6e-102 376.7 214 85.5
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 3.5e-102 375.6 287 70.7
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 3.0e-101 372.5 279 72.8
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 7.3e-100 367.9 295 66.8
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 3.6e-99 365.5 237 77.6
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 4.7e-99 365.2 253 72.7
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.8e-98 363.2 242 76.4
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 4.0e-98 362.1 214 82.7
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 4.0e-98 362.1 288 73.3
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 5.3e-98 361.7 288 69.1
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 9.0e-98 360.9 242 76.0
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 9.0e-98 360.9 242 76.0
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 3.4e-97 359.0 214 81.3
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 1.3e-96 357.1 302 66.6
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 1.4e-95 353.6 286 67.5
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 1.4e-95 353.6 210 81.4
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.9e-95 353.2 243 74.9
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 2.4e-95 352.8 258 74.0
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 4.2e-95 352.1 277 68.6
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 1.6e-94 350.1 281 68.7
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 3.5e-94 349.0 214 79.4
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 6.0e-94 348.2 212 83.5
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 6.0e-94 348.2 288 69.1
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 7.8e-94 347.8 253 69.6
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 1.0e-93 347.4 250 77.6
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.3e-93 347.1 250 74.4
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 1.3e-93 347.1 210 80.5
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 1.7e-93 346.7 215 81.9
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 3.9e-93 345.5 283 68.6
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 8.7e-93 344.4 210 83.3
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 7.3e-92 341.3 240 75.4
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 9.6e-92 340.9 240 75.8
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 1.3e-91 340.5 291 69.1
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 1.6e-91 340.1 308 62.3
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 2.1e-91 339.7 291 68.7
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 6.2e-91 338.2 246 69.5
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.1e-90 337.4 266 68.8
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 1.4e-90 337.0 213 77.0
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 2.4e-90 336.3 213 78.4
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 2.4e-90 336.3 283 65.7
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 3.1e-90 335.9 246 72.0
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 5.3e-90 335.1 243 72.4
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.5e-89 333.6 277 65.3
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 5.8e-89 331.6 296 62.5
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 1.3e-88 330.5 254 73.6
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.7e-88 330.1 193 83.9
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 2.9e-88 329.3 296 66.2
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.1e-87 327.4 238 72.7
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 1.1e-87 327.4 288 66.0
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 2.4e-87 326.2 288 65.6
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 2.4e-87 326.2 284 63.7
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.2e-87 325.9 194 80.4
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 3.2e-87 325.9 293 66.6
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 3.2e-87 325.9 215 74.0
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 1.6e-86 323.6 214 76.6
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 2.7e-86 322.8 244 70.9
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 3.5e-86 322.4 213 77.5
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 4.6e-86 322.0 214 76.2
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 1.3e-85 320.5 279 65.6
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.3e-85 320.5 279 65.6
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 1.3e-85 320.5 295 61.0
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 1.3e-85 320.5 206 78.6
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.9e-85 318.9 210 77.1
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 3.9e-85 318.9 232 72.4
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 6.7e-85 318.2 246 71.1
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 1.1e-84 317.4 292 64.0
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.1e-84 317.4 279 65.2
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 1.1e-84 317.4 212 71.2
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 1.6e-83 313.5 209 76.1
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 8.1e-83 311.2 281 61.9
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 1.1e-82 310.8 300 58.3
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 5.3e-82 308.5 285 59.3
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 6.9e-82 308.1 213 70.0
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 3.4e-81 305.8 243 63.4
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 1.1e-79 300.8 210 71.9
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 2.5e-79 299.7 285 60.4
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 3.2e-79 299.3 213 70.0
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 3.2e-79 299.3 250 66.8
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 4.2e-79 298.9 209 71.8
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 4.6e-78 295.4 246 65.4
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 2.3e-77 293.1 213 71.4
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 3.3e-76 289.3 243 67.5
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 2.1e-75 286.6 210 69.0
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 6.2e-75 285.0 215 67.4
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 1.1e-74 284.3 307 52.4
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 4.9e-72 275.4 153 84.3
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 8.4e-72 274.6 179 73.7
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 8.7e-69 264.6 212 63.7
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 1.3e-67 260.8 230 65.2
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 5.9e-65 251.9 246 56.5
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 4.8e-59 232.3 122 89.3
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 8.5e-56 221.5 213 61.5
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.2e-49 201.1 134 74.6
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 7.7e-49 198.4 201 53.7
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 7.7e-49 198.4 191 59.7
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 1.7e-40 170.6 167 61.1
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 3.4e-36 156.4 176 47.2
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.3e-32 144.4 179 49.2
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 6.5e-32 142.1 89 80.9
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 8.5e-32 141.7 89 80.9
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 2.0e-28 130.6 204 40.7
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 4.1e-26 122.9 94 68.1
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 7.2e-23 112.1 64 81.2
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 6.1e-22 109.0 137 54.0
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.8e-21 107.5 79 68.4
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 3.7e-19 99.8 133 39.8
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 7.0e-18 95.5 126 49.2
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 6.6e-16 89.0 55 76.4
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.5e-15 87.8 107 43.0
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 2.5e-15 87.0 61 73.8
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 6.0e-09 65.9 137 35.0
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.0e-08 65.1 170 32.9
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.3e-08 64.7 185 33.0
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 5.0e-08 62.8 44 70.5
Cpa.g.sc685.1 Carica papaya HOM05D006234 ORTHO05D007813 2.5e-07 60.5 109 38.5
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 3.3e-07 60.1 53 62.3
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 4.3e-07 59.7 30 90.0
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.2e-06 58.2 143 31.5
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 2.1e-06 57.4 142 34.5
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.8e-06 57.0 143 31.5
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.8e-06 57.0 134 32.1
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 2.8e-06 57.0 114 33.3
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 2.8e-06 57.0 112 36.6
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 3.6e-06 56.6 137 32.1
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 4.7e-06 56.2 101 36.6
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 6.2e-06 55.8 137 32.8
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 8.0e-06 55.5 120 35.8


User provided reference genes

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