Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000023g0290 Nicotiana tabacum HOM05D002484 ORTHO05D002541 2.5e-42 174.9 80 100.0
Solyc01g011495.1 Solanum lycopersicum HOM05D002484 ORTHO05D002541 1.7e-25 119.0 80 66.2
CAN.G559.4 Capsicum annuum HOM05D002484 ORTHO05D002541 2.9e-22 108.2 86 62.8
Solyc01g011435.1 Solanum lycopersicum HOM05D002484 ORTHO05D002541 6.1e-20 100.5 82 59.8
Nitab4.5_0000023g0330 Nicotiana tabacum HOM05D002484 ORTHO05D002541 1.4e-19 99.4 97 55.7
Nitab4.5_0000023g0340 Nicotiana tabacum HOM05D002484 ORTHO05D002541 3.0e-19 98.2 82 61.0
Peaxi162Scf00324g00715 Petunia axillaris HOM05D002484 ORTHO05D002541 2.4e-16 88.6 79 57.0
Peaxi162Scf00324g00722 Petunia axillaris HOM05D002484 ORTHO05D002541 9.1e-16 86.7 79 55.7
Peaxi162Scf00324g00716 Petunia axillaris HOM05D002484 ORTHO05D002541 4.5e-15 84.3 81 54.3
Nitab4.5_0005600g0020 Nicotiana tabacum HOM05D002484 ORTHO05D002541 2.2e-14 82.0 66 57.6
CAN.G1126.34 Capsicum annuum HOM05D002484 ORTHO05D002541 4.2e-13 77.8 68 51.5
Thecc.02G082200 Theobroma cacao HOM05D002484 ORTHO05D002541 1.6e-12 75.9 77 45.5
Solyc07g009260.3 Solanum lycopersicum HOM05D002484 ORTHO05D002541 4.7e-12 74.3 68 50.0
Nn3g20428 Nelumbo nucifera HOM05D002484 ORTHO05D002541 3.0e-11 71.6 80 47.5
COL.COLO4_25964 Corchorus olitorius HOM05D002484 ORTHO05D002541 4.0e-11 71.2 80 47.5
TWI56G0984 Tripterygium wilfordii HOM05D002484 ORTHO05D002541 8.8e-11 70.1 77 44.2
Ciclev10030125m.g Citrus clementina HOM05D002484 ORTHO05D002541 1.5e-10 69.3 78 44.9
AL7G11150 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 3.3e-10 68.2 78 42.3
Carub.0007s0110 Capsella rubella HOM05D002484 ORTHO05D002541 3.3e-10 68.2 79 41.8
Psat4g203560 Pisum sativum HOM05D002484 ORTHO05D002541 5.7e-10 67.4 78 44.9
AL1G32330 Arabidopsis lyrata HOM05D002484 ORTHO05D002541 7.5e-10 67.0 70 47.1
Medtr8g012805 Medicago truncatula HOM05D002484 ORTHO05D002541 1.3e-09 66.2 79 43.0
arahy.Tifrunner.gnm1.ann1.81M2S6 Arachis hypogaea HOM05D002484 ORTHO05D002541 1.7e-09 65.9 81 44.4
PGR031G2841 Punica granatum HOM05D002484 ORTHO05D002541 1.7e-09 65.9 67 46.3
Actinidia27667 Actinidia chinensis HOM05D002484 ORTHO05D002541 2.2e-09 65.5 78 43.6
AT1G19610 Arabidopsis thaliana HOM05D002484 ORTHO05D002541 2.8e-09 65.1 70 45.7
COL.COLO4_25966 Corchorus olitorius HOM05D002484 ORTHO05D002541 2.8e-09 65.1 68 44.1
Atru.chr13.431 Acer truncatum HOM05D002484 ORTHO05D002541 3.7e-09 64.7 81 43.2
Medtr8g012795 Medicago truncatula HOM05D002484 ORTHO05D002541 3.7e-09 64.7 63 42.9
Ciclev10029712m.g Citrus clementina HOM05D002484 ORTHO05D002541 4.8e-09 64.3 80 45.0
Ciclev10029828m.g Citrus clementina HOM05D002484 ORTHO05D002541 4.8e-09 64.3 80 45.0
Medtr8g012775 Medicago truncatula HOM05D002484 ORTHO05D002541 4.8e-09 64.3 70 45.7
TPR.G11190 Trifolium pratense HOM05D002484 ORTHO05D002541 4.8e-09 64.3 53 54.7
Duzib248G1325 Durio zibethinus HOM05D001795 ORTHO05D002541 6.3e-09 63.9 50 52.0
Thhalv10009242m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 8.2e-09 63.5 70 44.3
BcaC08g46653 Brassica carinata HOM05D002484 ORTHO05D002541 1.1e-08 63.2 60 46.7
COL.COLO4_25963 Corchorus olitorius HOM05D002484 ORTHO05D002541 1.1e-08 63.2 70 50.0
Thhalv10029442m.g Eutrema salsugineum HOM05D002484 ORTHO05D002541 1.1e-08 63.2 63 44.4
RcHm_v2.0_Chr6g0301471 Rosa chinensis HOM05D002484 ORTHO05D002541 1.1e-08 63.2 80 41.2
BcaB03g12908 Brassica carinata HOM05D002484 ORTHO05D002541 1.4e-08 62.8 61 44.3
BraA08t34910Z Brassica rapa HOM05D002484 ORTHO05D002541 1.4e-08 62.8 61 44.3
CARHR247530 Cardamine hirsuta HOM05D002484 ORTHO05D002541 1.4e-08 62.8 78 42.3
Lsat_1_v5_gn_7_90221 Lactuca sativa HOM05D002484 ORTHO05D002541 1.4e-08 62.8 78 42.3
Lj3g0015575 Lotus japonicus HOM05D002484 ORTHO05D002541 1.4e-08 62.8 71 42.3
Peaxi162Scf00069g00313 Petunia axillaris HOM05D015613 ORTHO05D011265 1.4e-08 62.8 76 44.7
Sp1g17450 Schrenkiella parvula HOM05D002484 ORTHO05D002541 1.4e-08 62.8 70 42.9
C06p46130 Brassica napus HOM05D002484 ORTHO05D002541 1.8e-08 62.4 71 45.1
BolC6t39666H Brassica oleracea HOM05D002484 ORTHO05D002541 1.8e-08 62.4 71 45.1
Carub.0007s0108 Capsella rubella HOM05D002484 ORTHO05D002541 1.8e-08 62.4 63 46.0
Atru.chr5.3052 Acer truncatum HOM05D002484 ORTHO05D002541 2.4e-08 62.0 78 44.9
HanXRQChr16g0505521 Helianthus annuus HOM05D002484 ORTHO05D002541 2.4e-08 62.0 78 43.6
Medtr8g012835 Medicago truncatula HOM05D002484 ORTHO05D002541 2.4e-08 62.0 46 54.3
BraA07t31386Z Brassica rapa HOM05D002484 ORTHO05D002541 3.1e-08 61.6 60 45.0
Cc00_g34420 Coffea canephora HOM05D025805 ORTHO05D011265 3.1e-08 61.6 83 41.0
BolC8t49576H Brassica oleracea HOM05D002484 ORTHO05D002541 4.1e-08 61.2 61 44.3
Carub.0001s1915 Capsella rubella HOM05D002484 ORTHO05D002541 4.1e-08 61.2 70 42.9
COL.COLO4_25965 Corchorus olitorius HOM05D002484 ORTHO05D002541 5.3e-08 60.8 71 47.9
HanXRQChr16g0505511 Helianthus annuus HOM05D002484 ORTHO05D002541 7.0e-08 60.5 78 42.3
A05p26930 Brassica napus HOM05D002484 ORTHO05D002541 9.1e-08 60.1 68 44.1
C01p00390 Brassica napus HOM05D002484 ORTHO05D002541 9.1e-08 60.1 68 44.1
BraA05t21573Z Brassica rapa HOM05D002484 ORTHO05D002541 9.1e-08 60.1 68 44.1
FAN20G1957 Fragaria x ananassa HOM05D002484 ORTHO05D002541 9.1e-08 60.1 73 42.5
Migut.N00483 Erythranthe guttata HOM05D002484 ORTHO05D002541 1.6e-07 59.3 80 38.8
TPR.G17112 Trifolium pratense HOM05D002484 ORTHO05D002541 1.6e-07 59.3 52 50.0
ATR1149G048 Amborella trichopoda HOM05D002484 ORTHO05D002541 2.0e-07 58.9 65 40.0
ECA236G2706 Erigeron canadensis HOM05D002484 ORTHO05D002541 2.7e-07 58.5 78 41.0
Nitab4.5_0002537g0050 Nicotiana tabacum HOM05D024896 ORTHO05D011265 2.7e-07 58.5 66 47.0
Psat4g205720 Pisum sativum HOM05D015613 ORTHO05D011265 2.7e-07 58.5 71 40.8
Sed0028225 Sechium edule HOM05D002484 ORTHO05D002541 2.7e-07 58.5 78 41.0
Nitab4.5_0000023g0280 Nicotiana tabacum HOM05D002484 ORTHO05D282385 4.5e-07 57.8 59 50.8
PGR031G0268 Punica granatum HOM05D002484 ORTHO05D002541 4.5e-07 57.8 56 44.6
ECA236G3295 Erigeron canadensis HOM05D002484 ORTHO05D002541 5.9e-07 57.4 78 41.0
HanXRQChr16g0506041 Helianthus annuus HOM05D002484 ORTHO05D002541 5.9e-07 57.4 78 39.7
Medtr8g012785 Medicago truncatula HOM05D002484 ORTHO05D002541 5.9e-07 57.4 45 51.1
Medtr8g012870 Medicago truncatula HOM05D002484 ORTHO05D002541 5.9e-07 57.4 69 42.0
Prupe.1G376000 Prunus persica HOM05D002484 ORTHO05D002541 5.9e-07 57.4 61 47.5
Lsat_1_v5_gn_5_65860 Lactuca sativa HOM05D002484 ORTHO05D002541 7.7e-07 57.0 78 41.0
BcaB03g14925 Brassica carinata HOM05D002484 ORTHO05D002541 1.0e-06 56.6 71 39.4
BcaNung01275 Brassica carinata HOM05D002484 ORTHO05D002541 1.0e-06 56.6 50 48.0
Psat4g205640 Pisum sativum HOM05D002484 ORTHO05D002541 1.0e-06 56.6 71 40.8
BcaC03g15628 Brassica carinata HOM05D002484 ORTHO05D002541 1.3e-06 56.2 79 39.2
SHI09116 Sapria himalayana HOM05D002484 ORTHO05D002541 1.3e-06 56.2 60 43.3
Atru.chr5.3054 Acer truncatum HOM05D002484 ORTHO05D002541 1.7e-06 55.8 79 43.0
Lsat_1_v5_gn_7_90281 Lactuca sativa HOM05D002484 ORTHO05D002541 1.7e-06 55.8 46 54.3
Solyc07g009080.4 Solanum lycopersicum HOM05D010303 ORTHO05D011265 1.7e-06 55.8 84 35.7
A02p20250 Brassica napus HOM05D002484 ORTHO05D002541 2.2e-06 55.5 46 47.8
C02p33650 Brassica napus HOM05D002484 ORTHO05D002541 2.2e-06 55.5 46 47.8
BolC2t09339H Brassica oleracea HOM05D002484 ORTHO05D002541 2.2e-06 55.5 46 47.8
BraA02t07059Z Brassica rapa HOM05D002484 ORTHO05D002541 2.2e-06 55.5 46 47.8
Solyc07g009100.3 Solanum lycopersicum HOM05D010303 ORTHO05D011265 2.9e-06 55.1 84 35.7
Aa31LG7G4230 Aethionema arabicum HOM05D002484 ORTHO05D002541 3.8e-06 54.7 51 47.1
Glyma.18G027700 Glycine max HOM05D002484 ORTHO05D002541 3.8e-06 54.7 46 54.3
BcaB05g24945 Brassica carinata HOM05D002484 ORTHO05D002541 5.0e-06 54.3 46 47.8
BcaB05g24946 Brassica carinata HOM05D002484 ORTHO05D002541 5.0e-06 54.3 46 47.8
A02p20260 Brassica napus HOM05D002484 ORTHO05D002541 5.0e-06 54.3 64 40.6
C02p33640 Brassica napus HOM05D002484 ORTHO05D002541 5.0e-06 54.3 64 40.6
BolC2t09340H Brassica oleracea HOM05D002484 ORTHO05D002541 5.0e-06 54.3 64 40.6
BraA02t07060Z Brassica rapa HOM05D002484 ORTHO05D002541 5.0e-06 54.3 64 40.6
HanXRQChr16g0505831 Helianthus annuus HOM05D002484 ORTHO05D002541 5.0e-06 54.3 78 37.2
PSO302G0221 Papaver somniferum HOM05D018786 ORTHO05D002541 5.0e-06 54.3 46 47.8
Solyc07g009020.2 Solanum lycopersicum HOM05D010303 ORTHO05D011265 5.0e-06 54.3 79 38.0
Sopen07g005040 Solanum pennellii HOM05D010303 ORTHO05D011265 5.0e-06 54.3 79 38.0
Prupe.8G071600 Prunus persica HOM05D002484 ORTHO05D002541 6.5e-06 53.9 92 39.1
Solyc07g009040.3 Solanum lycopersicum HOM05D010303 ORTHO05D011265 8.5e-06 53.5 79 38.0


User provided reference genes

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