Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 1.7e-140 502.7 257 100.0
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 9.4e-139 496.9 257 98.4
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 3.4e-133 478.4 255 95.3
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 1.3e-132 476.5 255 94.1
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 1.3e-132 476.5 255 94.1
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 3.6e-130 468.4 254 91.7
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 1.3e-127 459.9 255 92.5
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 8.8e-105 384.0 248 77.8
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.3e-103 380.2 253 76.7
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 2.8e-103 379.0 249 79.1
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 2.8e-103 379.0 252 77.4
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 1.1e-102 377.1 248 75.4
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 7.0e-102 374.4 248 74.6
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 5.9e-101 371.3 245 77.6
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 7.7e-101 370.9 253 74.3
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.3e-100 369.4 248 74.6
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.3e-100 369.4 248 74.6
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 2.9e-100 369.0 253 75.1
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 3.8e-100 368.6 250 76.4
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.0e-100 368.2 248 74.2
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.2e-98 363.6 248 75.0
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 8.0e-98 360.9 248 75.0
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 8.0e-98 360.9 253 73.5
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.8e-97 359.8 255 72.9
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 2.3e-97 359.4 248 73.8
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 4.0e-97 358.6 246 73.6
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 5.2e-97 358.2 255 72.9
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 6.8e-97 357.8 248 72.6
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 6.8e-97 357.8 248 72.6
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 1.5e-96 356.7 248 71.8
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 2.0e-96 356.3 248 73.4
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 1.3e-95 353.6 251 72.9
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 1.3e-95 353.6 254 70.9
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 2.9e-95 352.4 254 70.5
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 3.7e-95 352.1 254 70.1
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 4.9e-95 351.7 254 72.0
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 8.3e-95 350.9 248 72.6
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 1.1e-94 350.5 253 73.5
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 5.4e-94 348.2 248 71.8
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 5.4e-94 348.2 248 71.8
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 7.0e-94 347.8 248 71.8
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 1.2e-93 347.1 256 69.9
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.2e-93 347.1 249 71.9
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 2.7e-93 345.9 253 73.5
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 2.7e-93 345.9 248 71.4
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 7.8e-93 344.4 252 72.6
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 1.3e-92 343.6 248 71.0
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 1.3e-92 343.6 248 71.0
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 1.3e-92 343.6 248 71.0
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 1.3e-92 343.6 248 71.0
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 1.3e-92 343.6 253 73.9
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.3e-92 342.8 251 70.9
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 3.0e-92 342.4 254 70.9
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 6.6e-92 341.3 248 70.2
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 6.6e-92 341.3 248 70.6
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 8.6e-92 340.9 248 69.8
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 8.6e-92 340.9 248 71.8
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 1.1e-91 340.5 253 70.4
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 1.5e-91 340.1 256 70.7
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 1.9e-91 339.7 248 71.0
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 1.9e-91 339.7 256 70.3
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 2.5e-91 339.3 248 70.2
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.8e-90 335.9 248 71.0
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 3.6e-90 335.5 256 69.9
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 4.7e-90 335.1 246 71.1
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 2.3e-89 332.8 241 69.3
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.3e-89 332.8 255 67.5
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 6.8e-89 331.3 256 69.1
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 2.0e-88 329.7 250 68.4
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 4.4e-88 328.6 255 68.6
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 9.8e-88 327.4 248 69.4
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 1.3e-87 327.0 254 66.1
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 4.9e-87 325.1 287 62.4
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 4.9e-87 325.1 242 69.4
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 1.9e-86 323.2 254 65.4
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.4e-86 322.8 274 64.2
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 2.4e-86 322.8 249 69.9
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 9.2e-86 320.9 216 75.0
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 3.5e-85 318.9 241 70.1
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.7e-84 316.6 248 68.5
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 2.3e-84 316.2 251 66.5
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 8.6e-84 314.3 250 67.2
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 9.5e-83 310.8 248 66.9
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 4.7e-82 308.5 255 65.1
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 6.2e-82 308.1 251 62.5
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 6.2e-82 308.1 255 64.7
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 2.3e-81 306.2 249 66.3
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 5.2e-81 305.1 249 65.1
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 1.2e-80 303.9 256 63.7
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 1.3e-79 300.4 223 70.4
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 9.2e-78 294.3 215 71.6
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 1.2e-77 293.9 263 64.3
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 6.0e-77 291.6 250 64.4
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 1.3e-76 290.4 246 66.7
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 8.6e-76 287.7 265 59.6
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 8.6e-76 287.7 214 72.9
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 3.3e-75 285.8 241 63.9
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 8.1e-74 281.2 257 58.8
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 8.9e-73 277.7 218 67.9
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 1.7e-71 273.5 261 62.5
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 2.9e-71 272.7 257 57.6
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 3.8e-71 272.3 225 67.1
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 6.4e-71 271.6 253 58.9
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.1e-70 270.8 257 58.0
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 2.7e-69 266.2 308 51.3
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 1.0e-68 264.2 258 58.1
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 2.1e-66 256.5 244 58.2
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 3.6e-66 255.8 206 67.5
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.8e-65 253.4 256 59.4
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 5.2e-65 251.9 246 55.3
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 1.7e-63 246.9 255 56.5
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 1.7e-63 246.9 255 56.5
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 3.8e-63 245.7 249 56.6
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 3.8e-63 245.7 218 67.0
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 1.4e-62 243.8 261 55.6
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 1.9e-62 243.4 189 68.3
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 3.2e-62 242.7 265 57.4
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 4.2e-62 242.3 256 57.0
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 9.3e-62 241.1 260 56.5
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 1.3e-60 237.3 258 55.0
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 1.3e-60 237.3 258 55.0
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 1.3e-60 237.3 258 55.0
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 2.5e-59 233.0 252 54.0
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 3.8e-55 219.2 250 53.2
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 9.9e-48 194.5 140 70.0
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 3.8e-47 192.6 264 43.6
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.8e-42 176.4 134 71.6
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.1e-38 164.5 101 82.2
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 5.1e-36 155.6 221 48.9
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 4.8e-34 149.1 80 85.0
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.4e-30 137.5 128 60.9
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 3.1e-25 119.8 154 39.0
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 9.1e-25 118.2 139 43.9
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 4.5e-24 115.9 132 42.4
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 9.4e-22 108.2 114 61.4
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 2.3e-20 103.6 114 46.5
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 2.0e-19 100.5 158 36.1
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.3e-18 97.8 113 46.0
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 2.8e-18 96.7 112 52.7
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 1.4e-17 94.4 129 39.5
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 9.4e-14 81.6 43 79.1
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 7.4e-11 72.0 38 76.3
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 9.7e-11 71.6 33 93.9
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 1.7e-10 70.9 40 77.5
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 3.7e-10 69.7 48 64.6
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 3.7e-10 69.7 40 75.0
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 2.4e-09 67.0 33 84.8
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.7e-07 60.8 36 77.8
Os04g0392300 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.9e-06 57.4 114 36.0


User provided reference genes

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