Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 8.5e-53 209.9 95 100.0
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 2.7e-51 204.9 93 98.9
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 1.0e-42 176.4 93 86.0
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 8.8e-42 173.3 98 84.7
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 8.8e-42 173.3 98 84.7
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 7.4e-41 170.2 95 81.1
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 7.4e-41 170.2 98 82.7
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 3.7e-40 167.9 95 81.1
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 4.8e-40 167.5 93 82.8
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 8.2e-40 166.8 95 78.9
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.1e-39 166.4 87 82.8
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 2.4e-39 165.2 78 88.5
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 4.1e-39 164.5 95 80.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 6.9e-39 163.7 93 75.3
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 9.1e-39 163.3 81 88.9
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 9.1e-39 163.3 91 80.2
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.5e-38 162.5 77 88.3
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 2.6e-38 161.8 99 74.7
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 3.4e-38 161.4 93 78.5
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 3.4e-38 161.4 78 87.2
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 3.4e-38 161.4 87 79.3
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 4.5e-38 161.0 86 80.2
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 7.7e-38 160.2 79 84.8
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 7.7e-38 160.2 79 84.8
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 7.7e-38 160.2 95 76.8
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 1.0e-37 159.8 85 81.2
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 1.3e-37 159.5 78 87.2
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 1.7e-37 159.1 79 87.3
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 1.7e-37 159.1 94 73.4
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 2.2e-37 158.7 78 85.9
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 2.2e-37 158.7 78 85.9
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 2.2e-37 158.7 78 84.6
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 2.9e-37 158.3 87 79.3
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 5.0e-37 157.5 89 77.5
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 6.5e-37 157.1 91 78.0
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 6.5e-37 157.1 95 73.7
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 8.5e-37 156.8 87 79.3
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 8.5e-37 156.8 79 84.8
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 1.1e-36 156.4 95 75.8
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 1.4e-36 156.0 87 79.3
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 1.9e-36 155.6 89 75.3
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 1.9e-36 155.6 84 79.8
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 2.5e-36 155.2 87 79.3
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 3.2e-36 154.8 93 75.3
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 4.2e-36 154.5 95 73.7
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 7.2e-36 153.7 85 77.6
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 9.4e-36 153.3 79 82.3
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.2e-35 152.9 76 84.2
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 1.6e-35 152.5 77 84.4
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 2.1e-35 152.1 93 73.1
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 2.1e-35 152.1 87 75.9
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 3.6e-35 151.4 93 73.1
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 3.6e-35 151.4 88 73.9
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 4.7e-35 151.0 89 73.0
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 4.7e-35 151.0 93 73.1
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 6.1e-35 150.6 77 81.8
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 7.9e-35 150.2 77 81.8
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 7.9e-35 150.2 95 69.5
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 1.8e-34 149.1 80 78.8
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 2.3e-34 148.7 79 79.7
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 2.3e-34 148.7 93 71.0
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 3.0e-34 148.3 93 71.0
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 5.2e-34 147.5 80 77.5
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 6.7e-34 147.1 77 80.5
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 8.8e-34 146.7 80 77.5
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 8.8e-34 146.7 93 69.9
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 1.5e-33 146.0 78 78.2
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 1.5e-33 146.0 94 69.1
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 2.0e-33 145.6 87 74.7
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 3.3e-33 144.8 80 75.0
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 3.3e-33 144.8 93 72.0
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 4.4e-33 144.4 97 68.0
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 4.4e-33 144.4 77 80.5
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 5.7e-33 144.1 93 68.8
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 3.7e-32 141.4 91 69.2
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 1.8e-31 139.0 80 71.2
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 1.2e-30 136.3 125 55.2
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 1.6e-30 136.0 91 65.9
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 1.6e-27 125.9 146 46.6
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 1.7e-21 105.9 70 67.1
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 2.5e-20 102.1 198 32.3
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 5.5e-20 100.9 77 59.7
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 8.8e-18 93.6 43 90.7
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 1.2e-17 93.2 42 92.9
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 2.8e-16 88.6 41 90.2
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 8.3e-16 87.0 41 90.2
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 7.0e-15 84.0 42 81.0
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 4.5e-14 81.3 54 68.5
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 3.8e-13 78.2 50 70.0
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 3.8e-13 78.2 55 63.6
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 2.5e-12 75.5 42 73.8
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.6e-11 72.8 43 69.8
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 3.6e-11 71.6 45 71.1
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 1.4e-10 69.7 32 93.8
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 1.8e-10 69.3 86 38.4
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 1.8e-10 69.3 79 41.8
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 2.3e-10 68.9 79 41.8
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 2.3e-10 68.9 79 43.0
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 3.0e-10 68.6 79 40.5
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 4.0e-10 68.2 90 37.8
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 4.0e-10 68.2 79 41.8
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 5.2e-10 67.8 79 40.5
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 6.8e-10 67.4 90 37.8
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 6.8e-10 67.4 96 37.5
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 6.8e-10 67.4 89 39.3
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 8.8e-10 67.0 79 40.5
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 8.8e-10 67.0 79 40.5
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 8.8e-10 67.0 93 38.7
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 1.2e-09 66.6 90 37.8
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 1.2e-09 66.6 89 36.0
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 1.2e-09 66.6 79 40.5
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 1.5e-09 66.2 79 40.5
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 1.5e-09 66.2 79 40.5
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 1.5e-09 66.2 88 37.5
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 2.0e-09 65.9 85 40.0
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 2.0e-09 65.9 85 40.0
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 2.0e-09 65.9 90 37.8
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 2.0e-09 65.9 84 36.9
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 2.6e-09 65.5 86 37.2
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 2.6e-09 65.5 79 39.2
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 3.4e-09 65.1 87 37.9
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 3.4e-09 65.1 84 39.3
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 3.4e-09 65.1 79 39.2
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 4.4e-09 64.7 79 39.2
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 4.4e-09 64.7 79 39.2
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 4.4e-09 64.7 79 39.2
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 5.7e-09 64.3 79 38.0
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 5.7e-09 64.3 79 39.2
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 5.7e-09 64.3 79 39.2
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 5.7e-09 64.3 79 39.2
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 5.7e-09 64.3 77 40.3
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 5.7e-09 64.3 79 38.0
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 5.7e-09 64.3 79 39.2
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 7.5e-09 63.9 79 38.0
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 7.5e-09 63.9 79 38.0
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 7.5e-09 63.9 79 38.0
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 9.8e-09 63.5 85 32.9
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 9.8e-09 63.5 79 39.2
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 9.8e-09 63.5 79 36.7
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 1.3e-08 63.2 88 36.4
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.3e-08 63.2 79 39.2
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 1.7e-08 62.8 88 37.5
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 2.2e-08 62.4 84 35.7
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 2.2e-08 62.4 93 37.6
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 2.2e-08 62.4 79 38.0
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 2.2e-08 62.4 79 36.7
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 2.8e-08 62.0 91 36.3
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 2.8e-08 62.0 79 38.0
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 3.7e-08 61.6 79 35.4
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 3.7e-08 61.6 88 37.5
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 4.9e-08 61.2 79 39.2
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 4.9e-08 61.2 79 36.7
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 4.9e-08 61.2 83 36.1
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 4.9e-08 61.2 91 35.2
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 6.3e-08 60.8 79 35.4
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 6.3e-08 60.8 86 36.0
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 6.3e-08 60.8 86 36.0
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 6.3e-08 60.8 86 36.0
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 6.3e-08 60.8 86 36.0
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 36.7
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 1.1e-07 60.1 79 36.7
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 1.4e-07 59.7 95 33.7
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 1.8e-07 59.3 79 34.2
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 1.8e-07 59.3 101 32.7
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 2.4e-07 58.9 94 34.0
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 3.1e-07 58.5 77 33.8
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 3.1e-07 58.5 77 36.4
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 4.1e-07 58.2 86 32.6
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 4.1e-07 58.2 88 33.0
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 5.4e-07 57.8 108 31.5
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 1.2e-06 56.6 83 34.9
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 2.0e-06 55.8 118 28.8
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 4.5e-06 54.7 83 33.7
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 4.5e-06 54.7 70 38.6
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 4.5e-06 54.7 79 31.6
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 5.9e-06 54.3 86 34.9
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 7.8e-06 53.9 79 36.7


User provided reference genes

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