Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 2.8e-129 465.3 236 100.0
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 9.9e-111 403.7 230 89.1
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 5.9e-71 271.6 189 72.5
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 6.7e-67 258.1 231 61.5
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 6.3e-65 251.5 230 62.2
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 2.4e-56 223.0 231 56.3
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 1.7e-49 200.3 204 53.9
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 9.1e-48 194.5 246 46.7
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 7.7e-47 191.4 173 56.1
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 1.5e-45 187.2 235 47.7
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 4.2e-45 185.7 241 47.3
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 5.5e-45 185.3 208 51.9
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 4.7e-44 182.2 143 63.6
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.0e-43 181.0 241 46.5
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 2.3e-43 179.9 191 53.9
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 4.0e-43 179.1 185 49.2
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 8.8e-43 177.9 142 61.3
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 1.2e-42 177.6 203 52.7
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 2.0e-42 176.8 238 45.8
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 4.4e-42 175.6 190 51.1
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.3e-41 174.1 168 52.4
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 3.7e-41 172.6 166 54.2
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 4.9e-41 172.2 180 52.2
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 1.1e-40 171.0 200 51.0
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 1.8e-40 170.2 193 47.2
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.8e-40 170.2 207 49.3
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.8e-40 170.2 204 49.0
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 3.1e-40 169.5 161 54.7
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 9.1e-40 167.9 206 49.5
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 4.5e-39 165.6 231 43.7
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 4.5e-39 165.6 144 56.9
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 5.9e-39 165.2 238 42.9
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 7.7e-39 164.9 202 43.6
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 1.0e-38 164.5 189 47.6
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 1.0e-38 164.5 185 47.6
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 1.7e-38 163.7 205 43.9
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 2.9e-38 162.9 168 50.6
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 6.6e-38 161.8 186 51.1
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 6.6e-38 161.8 232 43.5
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 6.6e-38 161.8 208 48.1
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 6.6e-38 161.8 210 45.2
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 8.6e-38 161.4 184 50.0
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 1.1e-37 161.0 234 44.9
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 2.5e-37 159.8 149 50.3
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 3.3e-37 159.5 183 49.2
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 3.3e-37 159.5 232 42.7
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 4.3e-37 159.1 231 40.3
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 5.6e-37 158.7 223 40.8
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 5.6e-37 158.7 140 55.7
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 9.5e-37 157.9 199 44.2
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 1.2e-36 157.5 234 42.3
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 1.2e-36 157.5 161 53.4
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 2.1e-36 156.8 161 52.8
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 4.7e-36 155.6 187 48.7
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 1.0e-35 154.5 175 47.4
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.8e-35 153.7 161 52.8
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 4.0e-35 152.5 155 53.5
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 6.8e-35 151.8 188 42.0
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 1.2e-34 151.0 155 53.5
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 1.5e-34 150.6 154 53.2
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 1.5e-34 150.6 227 42.3
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 2.0e-34 150.2 195 45.1
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 3.4e-34 149.4 155 52.9
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 3.4e-34 149.4 155 52.9
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 4.4e-34 149.1 237 43.0
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 5.7e-34 148.7 195 47.7
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 7.5e-34 148.3 180 51.1
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.3e-33 147.5 208 45.2
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 1.7e-33 147.1 225 44.4
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 1.7e-33 147.1 150 52.7
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.1e-32 144.4 191 47.1
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 4.1e-32 142.5 221 42.1
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 9.2e-32 141.4 233 41.6
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 1.0e-30 137.9 109 58.7
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 3.3e-29 132.9 142 52.1
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 6.2e-28 128.6 160 44.4
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 6.2e-28 128.6 185 43.8
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 1.0e-27 127.9 142 46.5
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 2.0e-26 123.6 175 41.1
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 3.4e-26 122.9 139 46.8
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 5.8e-26 122.1 142 45.1
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 2.2e-25 120.2 146 41.8
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 2.2e-25 120.2 216 40.7
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 2.9e-25 119.8 130 45.4
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.9e-25 119.0 136 41.2
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 6.4e-25 118.6 159 39.6
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.1e-24 117.9 151 41.1
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 1.4e-24 117.5 170 38.8
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 1.4e-24 117.5 170 38.8
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 1.9e-24 117.1 147 42.2
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 2.4e-24 116.7 132 43.2
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 2.4e-24 116.7 132 43.2
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 3.2e-24 116.3 148 38.5
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 4.1e-24 115.9 129 44.2
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 5.4e-24 115.5 142 41.5
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.2e-23 114.4 234 35.0
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 1.2e-23 114.4 142 43.0
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 1.2e-23 114.4 156 40.4
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 1.6e-23 114.0 141 41.8
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 2.0e-23 113.6 141 42.6
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 2.0e-23 113.6 130 43.8
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 3.5e-23 112.8 146 41.8
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 3.5e-23 112.8 130 42.3
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 3.5e-23 112.8 165 38.2
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 4.6e-23 112.5 141 41.1
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 4.6e-23 112.5 147 42.9
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 6.0e-23 112.1 129 41.9
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 7.8e-23 111.7 141 41.1
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 7.8e-23 111.7 144 41.7
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 7.8e-23 111.7 134 42.5
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.7e-22 110.5 132 42.4
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 2.3e-22 110.2 166 36.1
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 2.3e-22 110.2 133 42.1
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 2.3e-22 110.2 133 42.1
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 3.0e-22 109.8 134 41.0
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 3.0e-22 109.8 164 40.9
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.1e-21 107.8 129 42.6
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.1e-21 107.8 138 42.8
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 1.1e-21 107.8 144 41.7
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.5e-21 107.5 142 40.1
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 1.9e-21 107.1 94 52.1
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 1.9e-21 107.1 132 39.4
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.3e-21 105.9 149 39.6
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 1.6e-20 104.0 140 39.3
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 6.2e-20 102.1 77 62.3
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 6.2e-20 102.1 145 35.9
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 8.1e-20 101.7 151 39.1
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 8.1e-20 101.7 151 39.1
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 8.1e-20 101.7 120 42.5
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 1.4e-19 100.9 129 38.0
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 1.4e-19 100.9 151 38.4
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 1.4e-19 100.9 151 37.7
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 1.4e-19 100.9 151 38.4
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 1.4e-19 100.9 151 38.4
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 1.4e-19 100.9 212 33.0
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 1.4e-19 100.9 137 40.9
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.0e-19 99.4 133 36.8
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 4.0e-19 99.4 167 38.3
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 4.0e-19 99.4 133 34.6
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 8.9e-19 98.2 167 37.7
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.2e-18 97.8 133 42.1
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 9.8e-18 94.7 133 37.6
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 1.7e-17 94.0 160 36.2
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 4.9e-17 92.4 117 39.3
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.4e-16 90.9 129 36.4
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.4e-16 90.9 126 39.7
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.4e-16 90.9 104 39.4
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 3.2e-16 89.7 143 36.4
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 7.1e-16 88.6 121 34.7
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 7.1e-16 88.6 132 34.8
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 1.6e-15 87.4 122 34.4
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 2.1e-15 87.0 96 39.6
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 6.0e-15 85.5 95 44.2
Actinidia08745 Actinidia chinensis HOM05D000074 ORTHO05D006801 1.3e-14 84.3 75 57.3
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 6.6e-14 82.0 106 41.5
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 4.3e-13 79.3 88 44.3
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 6.2e-12 75.5 83 44.6
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 6.2e-12 75.5 135 34.8
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 8.1e-12 75.1 80 42.5
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 4.4e-10 69.3 92 37.0
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 1.9e-08 63.9 203 28.1
SMO290G0002 Selaginella moellendorffii HOM05D005423 ORTHO05D006223 7.1e-08 62.0 180 26.7
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 2.7e-07 60.1 142 27.5
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 2.7e-07 60.1 60 41.7


User provided reference genes

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