Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 9.2e-83 310.1 146 100.0
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 3.5e-82 308.1 146 98.6
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 1.4e-78 296.2 146 93.2
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 1.4e-78 296.2 146 93.2
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 1.8e-78 295.8 146 93.2
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 2.4e-78 295.4 146 94.5
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 2.2e-76 288.9 146 91.1
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 2.4e-75 285.4 137 96.4
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 1.5e-72 276.2 146 88.4
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 1.2e-71 273.1 146 86.3
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.4e-70 269.6 146 85.6
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 1.4e-70 269.6 146 84.9
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 3.4e-69 265.0 146 81.5
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 3.4e-69 265.0 147 83.0
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 4.4e-69 264.6 146 83.6
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 4.4e-69 264.6 146 84.2
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 4.4e-69 264.6 150 84.7
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 7.6e-69 263.8 146 83.6
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 9.9e-69 263.5 146 83.6
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 9.9e-69 263.5 146 82.2
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 1.3e-68 263.1 146 84.2
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 1.3e-68 263.1 146 82.2
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 2.2e-68 262.3 146 84.2
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 2.9e-68 261.9 146 83.6
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 2.9e-68 261.9 146 80.8
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 2.9e-68 261.9 146 82.2
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 1.4e-67 259.6 146 83.6
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 1.4e-67 259.6 146 83.6
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 2.4e-67 258.8 147 83.0
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 3.2e-67 258.5 147 81.0
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 7.1e-67 257.3 147 82.3
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 7.1e-67 257.3 146 78.8
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 1.2e-66 256.5 146 80.8
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 1.6e-66 256.1 146 80.8
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 3.5e-66 255.0 147 80.3
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 4.6e-66 254.6 147 81.6
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 4.6e-66 254.6 148 81.1
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 6.0e-66 254.2 151 81.5
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 1.3e-65 253.1 146 79.5
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 3.0e-65 251.9 140 82.1
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 3.0e-65 251.9 147 81.0
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 3.0e-65 251.9 148 79.1
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 3.9e-65 251.5 146 80.1
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 5.1e-65 251.1 146 80.1
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 8.7e-65 250.4 147 77.6
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 8.7e-65 250.4 147 77.6
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.1e-64 250.0 147 78.2
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 1.5e-64 249.6 148 80.4
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 1.9e-64 249.2 146 80.1
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 4.3e-64 248.1 143 77.6
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 5.6e-64 247.7 146 76.0
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 7.3e-64 247.3 146 76.7
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 9.6e-64 246.9 146 75.3
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 1.3e-63 246.5 148 79.1
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.3e-63 246.5 146 75.3
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.3e-63 246.5 146 78.1
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 2.1e-63 245.7 146 77.4
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 3.6e-63 245.0 148 79.7
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 4.8e-63 244.6 150 79.3
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 4.8e-63 244.6 147 78.2
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 4.8e-63 244.6 147 78.2
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 6.2e-63 244.2 146 74.0
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 6.2e-63 244.2 146 75.3
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 8.1e-63 243.8 146 78.1
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 1.1e-62 243.4 146 77.4
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.1e-62 243.4 146 76.0
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 1.8e-62 242.7 146 75.3
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 3.1e-62 241.9 146 76.0
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 3.1e-62 241.9 147 75.5
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 4.0e-62 241.5 147 76.9
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 4.0e-62 241.5 148 78.4
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 4.0e-62 241.5 146 75.3
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 5.3e-62 241.1 146 74.7
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 5.3e-62 241.1 146 76.0
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 9.0e-62 240.4 146 74.7
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 9.0e-62 240.4 146 76.7
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 75.3
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.0e-61 239.2 146 74.7
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.0e-61 239.2 146 74.0
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.0e-61 239.2 146 74.0
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.0e-61 239.2 148 75.7
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 3.4e-61 238.4 146 74.7
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 3.4e-61 238.4 147 76.2
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 4.5e-61 238.0 146 74.7
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 4.5e-61 238.0 146 74.7
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 5.8e-61 237.7 144 74.3
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 5.8e-61 237.7 148 78.4
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 7.6e-61 237.3 146 74.0
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 9.9e-61 236.9 146 74.0
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 9.9e-61 236.9 146 76.7
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.3e-60 236.5 147 74.1
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 1.7e-60 236.1 147 73.5
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.2e-60 235.7 132 81.1
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.2e-60 235.7 132 81.1
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.2e-60 235.7 147 75.5
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 2.9e-60 235.3 148 76.4
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 1.1e-59 233.4 144 73.6
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 1.4e-59 233.0 146 70.5
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.9e-59 232.6 146 73.3
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 2.4e-59 232.3 149 74.5
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.4e-59 232.3 132 80.3
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 4.2e-59 231.5 149 73.8
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 7.1e-59 230.7 149 73.8
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 9.3e-59 230.3 148 75.0
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 2.7e-58 228.8 147 73.5
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 2.7e-58 228.8 147 73.5
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.3e-57 225.7 146 72.6
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 3.9e-57 224.9 147 72.8
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 3.9e-57 224.9 147 72.8
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 3.9e-57 224.9 133 78.2
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 5.1e-57 224.6 146 69.2
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 5.1e-57 224.6 131 74.8
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 5.1e-57 224.6 140 72.9
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 5.1e-57 224.6 146 69.2
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 6.7e-57 224.2 130 79.2
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.5e-56 223.0 150 72.0
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.9e-56 222.6 147 74.8
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 7.4e-56 220.7 150 74.0
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.3e-55 219.9 150 72.7
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 1.6e-55 219.5 147 72.1
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.8e-55 218.8 117 83.8
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 6.2e-55 217.6 125 78.4
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 8.1e-55 217.2 147 70.7
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 4.5e-53 211.5 146 67.8
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 5.8e-53 211.1 150 67.3
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 7.6e-53 210.7 150 71.3
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 2.2e-52 209.1 132 74.2
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 4.9e-52 208.0 151 66.2
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 1.1e-51 206.8 150 68.0
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 1.9e-51 206.1 150 66.0
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 1.9e-51 206.1 150 66.0
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 7.1e-51 204.1 150 67.3
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 1.6e-50 203.0 150 66.7
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 1.6e-50 203.0 150 66.7
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 1.6e-50 203.0 150 66.7
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-48 196.8 148 65.5
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 1.1e-48 196.8 148 65.5
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 1.1e-48 196.8 148 65.5
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 1.1e-48 196.8 146 65.1
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 3.3e-48 195.3 134 70.9
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 3.3e-48 195.3 146 63.7
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 2.1e-47 192.6 123 70.7
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 1.4e-46 189.9 146 66.4
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.1e-43 180.3 146 64.4
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 9.7e-40 167.2 101 75.2
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 8.2e-39 164.1 97 82.5
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 1.8e-38 162.9 101 74.3
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 1.2e-37 160.2 146 60.3
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 7.9e-34 147.5 134 54.5
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 1.9e-32 142.9 122 57.4
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 3.0e-25 119.0 68 80.9
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 5.7e-24 114.8 127 54.3
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 1.7e-23 113.2 75 74.7
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 8.2e-23 110.9 141 43.3
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 2.3e-17 92.8 90 50.0
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 1.1e-11 73.9 98 33.7
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 9.4e-11 70.9 37 78.4
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 5.2e-09 65.1 76 51.3
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 4.8e-07 58.5 69 37.7


User provided reference genes

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