Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000020g0420 Nicotiana tabacum HOM05D000120 ORTHO05D020895 2.0e-36 155.2 75 100.0
CAN.G1230.14 Capsicum annuum HOM05D000120 ORTHO05D000068 2.3e-13 78.6 51 62.7
Nitab4.5_0005761g0070 Nicotiana tabacum HOM05D000120 ORTHO05D000068 2.3e-13 78.6 51 62.7
Nitab4.5_0000109g0240 Nicotiana tabacum HOM05D000120 ORTHO05D000068 4.0e-13 77.8 51 60.8
Peaxi162Scf00603g00214 Petunia axillaris HOM05D000120 ORTHO05D000068 8.8e-13 76.6 51 60.8
Nitab4.5_0001945g0020 Nicotiana tabacum HOM05D000120 ORTHO05D020895 5.7e-12 73.9 51 62.7
Migut.A00066 Erythranthe guttata HOM05D000120 ORTHO05D000068 1.7e-11 72.4 51 58.8
CsaV3_6G031900 Cucumis sativus L. HOM05D000120 ORTHO05D000068 2.2e-11 72.0 51 56.9
Solyc06g066120.3 Solanum lycopersicum HOM05D000120 ORTHO05D000068 4.8e-11 70.9 51 56.9
Sopen06g024600 Solanum pennellii HOM05D000120 ORTHO05D000068 4.8e-11 70.9 51 56.9
PGSC0003DMG401020473 Solanum tuberosum HOM05D000120 ORTHO05D000068 4.8e-11 70.9 51 56.9
Nitab4.5_0001306g0080 Nicotiana tabacum HOM05D000120 ORTHO05D020895 6.3e-11 70.5 48 64.6
ClCG00G004670 Citrullus lanatus HOM05D000120 ORTHO05D000068 1.1e-10 69.7 51 54.9
ClCG08G009770 Citrullus lanatus HOM05D000120 ORTHO05D000068 1.1e-10 69.7 51 54.9
Duzib187G0014 Durio zibethinus HOM05D000120 ORTHO05D000068 1.1e-10 69.7 51 54.9
Oeu022306.1 Olea europaea HOM05D000120 ORTHO05D000068 1.1e-10 69.7 51 58.8
ECA236G2268 Erigeron canadensis HOM05D000120 ORTHO05D000068 3.1e-10 68.2 51 52.9
Medtr3g023740 Medicago truncatula HOM05D000120 ORTHO05D000068 4.1e-10 67.8 51 54.9
Potri.006G219700 Populus trichocarpa HOM05D000120 ORTHO05D000068 4.1e-10 67.8 51 51.0
QL02p017225 Quercus lobata HOM05D000120 ORTHO05D000068 4.1e-10 67.8 51 52.9
vmacro12622 Vaccinium macrocarpon HOM05D000120 ORTHO05D000068 4.1e-10 67.8 51 56.9
GSVIVG01035481001 Vitis vinifera HOM05D000120 ORTHO05D000068 4.1e-10 67.8 51 49.0
Sed0009289 Sechium edule HOM05D000120 ORTHO05D000068 5.3e-10 67.4 51 54.9
PGR142G0334 Punica granatum HOM05D000120 ORTHO05D000068 7.0e-10 67.0 51 51.0
Rhsim01G0182900 Rhododendron simsii HOM05D000120 ORTHO05D000068 7.0e-10 67.0 51 54.9
Atru.chr7.1836 Acer truncatum HOM05D000120 ORTHO05D000068 9.1e-10 66.6 51 51.0
Cfa017863 Carpinus fangiana HOM05D000120 ORTHO05D007928 9.1e-10 66.6 51 51.0
Ciclev10010487m.g Citrus clementina HOM05D000120 ORTHO05D000068 9.1e-10 66.6 51 49.0
CANSAT25G2409 Cannabis sativa HOM05D000120 ORTHO05D000068 1.2e-09 66.2 51 51.0
Haze_18307 Corylus avellana HOM05D000120 ORTHO05D000068 1.6e-09 65.9 51 49.0
Manes.16G086400 Manihot esculenta HOM05D000120 ORTHO05D000068 1.6e-09 65.9 51 52.9
Sabra06G0169600 Salix brachista HOM05D000120 ORTHO05D000068 1.6e-09 65.9 51 49.0
SalBow4G3291 Salvia bowleyana HOM05D000120 ORTHO05D000068 1.6e-09 65.9 51 49.0
Cpa.g.sc126.11 Carica papaya HOM05D000120 ORTHO05D000068 2.0e-09 65.5 51 51.0
Cc08_g01060 Coffea canephora HOM05D000120 ORTHO05D000068 2.0e-09 65.5 51 51.0
arahy.Tifrunner.gnm1.ann1.0RR02G Arachis hypogaea HOM05D000120 ORTHO05D000068 2.7e-09 65.1 51 52.9
arahy.Tifrunner.gnm1.ann1.4XS3SM Arachis hypogaea HOM05D000120 ORTHO05D000068 2.7e-09 65.1 51 52.9
MELO3C011492.2 Cucumis melo HOM05D000120 ORTHO05D000068 2.7e-09 65.1 52 53.8
Dinv41850 Davidia involucrata HOM05D000120 ORTHO05D000068 2.7e-09 65.1 51 51.0
Actinidia29349 Actinidia chinensis HOM05D000120 ORTHO05D000068 3.5e-09 64.7 47 57.4
Nitab4.5_0006891g0040 Nicotiana tabacum HOM05D000120 ORTHO05D020895 3.5e-09 64.7 38 78.9
Sc23g0006110 Simmondsia chinensis HOM05D000120 ORTHO05D000068 5.9e-09 63.9 48 50.0
Nitab4.5_0002702g0060 Nicotiana tabacum HOM05D000120 ORTHO05D020895 7.7e-09 63.5 35 80.0
EL10Ac2g02412 Beta vulgaris HOM05D000120 ORTHO05D000068 1.0e-08 63.2 48 52.1
Duzib168G0681 Durio zibethinus HOM05D000120 ORTHO05D000068 1.0e-08 63.2 51 51.0
SGA_v2.0_scaffold64G21893 Striga asiatica HOM05D000120 ORTHO05D000068 1.0e-08 63.2 51 51.0
Lalb_Chr08g0244761 Lupinus albus HOM05D000120 ORTHO05D000068 1.3e-08 62.8 47 53.2
MD08G1072800 Malus domestica HOM05D000120 ORTHO05D000068 1.3e-08 62.8 48 52.1
Thecc.09G064700 Theobroma cacao HOM05D000120 ORTHO05D000068 1.3e-08 62.8 51 49.0
Ah.12g061260 Amaranthus hybridus HOM05D000120 ORTHO05D000068 2.2e-08 62.0 48 50.0
Eucgr.C00736 Eucalyptus grandis HOM05D000120 ORTHO05D000068 2.9e-08 61.6 51 47.1
Lj8C481G4 Lonicera japonica HOM05D000120 ORTHO05D000068 3.8e-08 61.2 47 48.9
THA.LOC104815088 Tarenaya hassleriana HOM05D000120 ORTHO05D000068 3.8e-08 61.2 48 52.1
TPR.G13631 Trifolium pratense HOM05D000120 ORTHO05D000068 3.8e-08 61.2 51 47.1
TPR.G3517 Trifolium pratense HOM05D000120 ORTHO05D000068 3.8e-08 61.2 51 47.1
AUR62020286 Chenopodium quinoa HOM05D000120 ORTHO05D000068 5.0e-08 60.8 48 50.0
AUR62037717 Chenopodium quinoa HOM05D000120 ORTHO05D000068 5.0e-08 60.8 48 50.0
DCAR_007768 Daucus carota HOM05D000120 ORTHO05D000068 5.0e-08 60.8 48 45.8
Lj8A454G27 Lonicera japonica HOM05D000120 ORTHO05D000068 5.0e-08 60.8 47 48.9
TWI63G1625 Tripterygium wilfordii HOM05D000120 ORTHO05D000068 5.0e-08 60.8 48 50.0
HanXRQChr05g0135891 Helianthus annuus HOM05D000120 ORTHO05D000068 6.5e-08 60.5 51 47.1
Nn8g38646 Nelumbo nucifera HOM05D000120 ORTHO05D000068 6.5e-08 60.5 51 45.1
Psat5g034200 Pisum sativum HOM05D000120 ORTHO05D000068 6.5e-08 60.5 48 50.0
Lj1g0021873 Lotus japonicus HOM05D000120 ORTHO05D000068 8.5e-08 60.1 48 50.0
MD15G1049000 Malus domestica HOM05D000120 ORTHO05D000068 8.5e-08 60.1 48 47.9
PSO135G0749 Papaver somniferum HOM05D000120 ORTHO05D000068 8.5e-08 60.1 48 50.0
PSO724G0475 Papaver somniferum HOM05D000120 ORTHO05D000068 8.5e-08 60.1 48 50.0
TPR.G25348 Trifolium pratense HOM05D000120 ORTHO05D000068 8.5e-08 60.1 51 47.1
Lsat_1_v5_gn_8_70560 Lactuca sativa HOM05D000120 ORTHO05D000068 1.1e-07 59.7 51 45.1
Psat5g034320 Pisum sativum HOM05D000120 ORTHO05D000068 1.1e-07 59.7 48 47.9
Sp5g17330 Schrenkiella parvula HOM05D000120 ORTHO05D000068 1.1e-07 59.7 48 50.0
Gohir.A08G247300 Gossypium hirsutum HOM05D000120 ORTHO05D000068 1.5e-07 59.3 45 51.1
Lalb_Chr23g0267991 Lupinus albus HOM05D000120 ORTHO05D000068 1.5e-07 59.3 47 48.9
HanXRQChr09g0261871 Helianthus annuus HOM05D000120 ORTHO05D000068 1.9e-07 58.9 51 47.1
Medtr3g105230 Medicago truncatula HOM05D000120 ORTHO05D000068 1.9e-07 58.9 51 47.1
TWI34G1263 Tripterygium wilfordii HOM05D000120 ORTHO05D000068 1.9e-07 58.9 48 47.9
TPR.G3543 Trifolium pratense HOM05D000120 ORTHO05D000068 2.5e-07 58.5 48 45.8
ATR0598G236 Amborella trichopoda HOM05D000120 ORTHO05D000068 3.2e-07 58.2 51 41.2
Carub.0005s0965 Capsella rubella HOM05D000120 ORTHO05D000068 3.2e-07 58.2 51 47.1
Gohir.D08G268500 Gossypium hirsutum HOM05D000120 ORTHO05D000068 3.2e-07 58.2 45 51.1
Gorai.004G286200 Gossypium raimondii HOM05D000120 ORTHO05D000068 3.2e-07 58.2 45 51.1
Hma1.2p1_0641F.1_g194180 Hydrangea macrophylla HOM05D000120 ORTHO05D000068 3.2e-07 58.2 51 45.1
unitig_748.g7560 Utricularia gibba HOM05D000120 ORTHO05D000068 3.2e-07 58.2 53 54.7
Aa31LG4G13560 Aethionema arabicum HOM05D000120 ORTHO05D000068 4.2e-07 57.8 48 47.9
Aqoxy7G04084 Aquilegia oxysepala HOM05D000120 ORTHO05D000068 5.5e-07 57.4 48 47.9
FvH4_2g30880 Fragaria vesca HOM05D000120 ORTHO05D000068 5.5e-07 57.4 48 47.9
FAN20G1907 Fragaria x ananassa HOM05D000120 ORTHO05D000068 5.5e-07 57.4 48 47.9
FAN24G1804 Fragaria x ananassa HOM05D000120 ORTHO05D000068 5.5e-07 57.4 48 47.9
Prupe.1G403300 Prunus persica HOM05D000120 ORTHO05D000068 5.5e-07 57.4 51 43.1
Thhalv10002503m.g Eutrema salsugineum HOM05D000120 ORTHO05D000068 7.2e-07 57.0 48 45.8
TAR624G0349 Trochodendron aralioides HOM05D000120 ORTHO05D007928 7.2e-07 57.0 51 43.1
BcaB01g01211 Brassica carinata HOM05D000120 ORTHO05D000068 9.4e-07 56.6 48 45.8
BcaC01g02087 Brassica carinata HOM05D000120 ORTHO05D000068 9.4e-07 56.6 48 45.8
A06p22340 Brassica napus HOM05D000120 ORTHO05D000068 9.4e-07 56.6 48 45.8
C03p68730 Brassica napus HOM05D000120 ORTHO05D000068 9.4e-07 56.6 48 45.8
BolC3t19126H Brassica oleracea HOM05D000120 ORTHO05D000068 9.4e-07 56.6 48 45.8
BraA06t25320Z Brassica rapa HOM05D000120 ORTHO05D000068 9.4e-07 56.6 48 45.8
Sed0000254 Sechium edule HOM05D000120 ORTHO05D000068 9.4e-07 56.6 44 52.3
AL5G21900 Arabidopsis lyrata HOM05D000120 ORTHO05D000068 1.2e-06 56.2 48 47.9
AT3G43860 Arabidopsis thaliana HOM05D000120 ORTHO05D000068 1.2e-06 56.2 48 47.9
Manes.03G053900 Manihot esculenta HOM05D000120 ORTHO05D000068 1.2e-06 56.2 51 43.1
Ah.04g159720 Amaranthus hybridus HOM05D000120 ORTHO05D000068 1.6e-06 55.8 54 42.6
ATR0693G460 Amborella trichopoda HOM05D000120 ORTHO05D000068 1.6e-06 55.8 68 38.2
CARHR154110 Cardamine hirsuta HOM05D000120 ORTHO05D000068 1.6e-06 55.8 48 47.9
DCAR_003720 Daucus carota HOM05D000120 ORTHO05D000068 1.6e-06 55.8 41 56.1
ECA247G1389 Erigeron canadensis HOM05D000120 ORTHO05D000068 1.6e-06 55.8 66 43.9
Aqoxy5G00788 Aquilegia oxysepala HOM05D000120 ORTHO05D000068 2.1e-06 55.5 51 43.1
MSTRG.11632 Avicennia marina HOM05D000120 ORTHO05D000068 2.1e-06 55.5 51 47.1
CDE04G0980 Ceratophyllum demersum HOM05D000120 ORTHO05D000068 2.1e-06 55.5 51 43.1
A06p26800 Brassica napus HOM05D000120 ORTHO05D000068 2.7e-06 55.1 48 45.8
BraA06t25609Z Brassica rapa HOM05D000120 ORTHO05D000068 2.7e-06 55.1 48 45.8
FAN27G1543 Fragaria x ananassa HOM05D000120 ORTHO05D000068 2.7e-06 55.1 45 48.9
MBI05_g04842_MAGBIO Magnolia biondii HOM05D000120 ORTHO05D000068 3.6e-06 54.7 68 36.8
Hund05443 Selenicereus undatus HOM05D000120 ORTHO05D000068 3.6e-06 54.7 51 41.2
EL10Ac4g10104 Beta vulgaris HOM05D000120 ORTHO05D000068 4.7e-06 54.3 54 42.6
AUR62010397 Chenopodium quinoa HOM05D000120 ORTHO05D000068 4.7e-06 54.3 68 38.2
Gohir.D06G079500 Gossypium hirsutum HOM05D000120 ORTHO05D000068 4.7e-06 54.3 51 41.2
Gorai.010G092700 Gossypium raimondii HOM05D000120 ORTHO05D000068 4.7e-06 54.3 51 41.2
HanXRQChr10g0284851 Helianthus annuus HOM05D000120 ORTHO05D000068 4.7e-06 54.3 68 36.8
SEGI_05311 Sequoiadendron giganteum HOM05D000120 ORTHO05D000068 4.7e-06 54.3 51 39.2
CAN.G397.96 Capsicum annuum HOM05D000120 ORTHO05D000068 6.1e-06 53.9 41 51.2
AUR62006550 Chenopodium quinoa HOM05D000120 ORTHO05D000068 6.1e-06 53.9 54 42.6
Ah.15g093060 Amaranthus hybridus HOM05D000120 ORTHO05D000068 8.0e-06 53.5 73 37.0
BcaB02g10770 Brassica carinata HOM05D000120 ORTHO05D000068 8.0e-06 53.5 48 43.8
Gohir.A06G080000 Gossypium hirsutum HOM05D000120 ORTHO05D000068 8.0e-06 53.5 51 41.2
HanXRQChr15g0465551 Helianthus annuus HOM05D000120 ORTHO05D000068 8.0e-06 53.5 68 36.8
HanXRQChr17g0566861 Helianthus annuus HOM05D000120 ORTHO05D000068 8.0e-06 53.5 41 46.3
MD03G1291200 Malus domestica HOM05D000120 ORTHO05D000068 8.0e-06 53.5 51 41.2
MD11G1307100 Malus domestica HOM05D000120 ORTHO05D000068 8.0e-06 53.5 51 41.2


User provided reference genes

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