Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.4e-200 701.0 348 100.0
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.4e-192 674.9 348 96.3
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 2.2e-167 592.4 356 84.0
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 6.9e-161 570.9 352 81.0
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 4.5e-160 568.2 359 79.9
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 1.4e-158 563.1 359 79.1
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 7.9e-157 557.4 359 79.1
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 6.7e-156 554.3 357 79.6
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.3e-147 525.4 305 90.2
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.1e-137 492.3 342 76.9
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 3.5e-136 488.8 347 72.6
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 7.5e-123 444.5 361 64.5
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 1.2e-120 437.2 355 63.7
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 3.8e-119 432.2 360 63.9
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 6.1e-109 398.3 360 61.1
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 6.8e-108 394.8 353 62.9
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 1.4e-105 387.1 353 59.8
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.4e-105 387.1 355 58.9
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.0e-104 383.3 359 57.1
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.0e-104 383.3 359 57.1
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 2.0e-104 383.3 348 58.0
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 2.3e-103 379.8 374 54.3
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.5e-102 377.1 359 54.3
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.3e-102 375.9 364 57.7
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 5.6e-102 375.2 364 55.8
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.1e-101 373.2 363 57.0
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 3.6e-101 372.5 376 53.7
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 1.0e-100 370.9 351 55.3
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 3.1e-100 369.4 359 52.4
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 3.1e-100 369.4 348 56.9
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 8.9e-100 367.9 377 53.1
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 1.7e-98 363.6 374 53.5
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 7.0e-97 358.2 363 52.9
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 2.7e-96 356.3 279 62.7
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 4.6e-96 355.5 362 53.9
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 7.8e-96 354.8 361 52.9
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.7e-95 353.6 361 53.2
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 2.3e-95 353.2 351 54.1
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.3e-95 353.2 354 53.7
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 3.0e-95 352.8 365 53.4
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 3.0e-95 352.8 332 58.1
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 6.6e-95 351.7 362 53.3
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 1.5e-94 350.5 372 52.7
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 1.5e-94 350.5 372 52.7
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 7.3e-94 348.2 355 52.7
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 9.5e-94 347.8 361 53.2
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 9.5e-94 347.8 354 54.0
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 1.2e-93 347.4 363 52.3
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 1.2e-93 347.4 354 54.0
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.8e-93 346.3 367 52.0
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 3.6e-93 345.9 360 51.7
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.4e-92 344.0 358 53.9
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 5.2e-92 342.0 342 53.2
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 8.9e-92 341.3 357 54.3
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 8.9e-92 341.3 365 54.5
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 2.0e-91 340.1 357 51.5
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 9.8e-91 337.8 365 52.9
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 1.7e-90 337.0 361 51.5
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 2.9e-90 336.3 361 51.5
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 3.7e-90 335.9 364 50.3
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 6.4e-90 335.1 363 52.6
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 6.4e-90 335.1 363 51.0
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 6.4e-90 335.1 361 51.5
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 5.4e-89 332.0 357 52.4
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 1.2e-88 330.9 366 51.1
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 1.6e-88 330.5 350 53.1
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 3.0e-87 326.2 349 52.7
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 1.1e-86 324.3 360 50.3
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 5.6e-86 322.0 269 57.2
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 7.3e-86 321.6 283 59.0
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 7.3e-86 321.6 350 50.9
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 9.5e-86 321.2 364 48.9
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 2.1e-85 320.1 364 48.9
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.8e-85 319.7 364 49.5
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 8.1e-85 318.2 351 49.3
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 1.1e-84 317.8 348 50.0
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 1.4e-84 317.4 346 53.5
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.4e-84 317.4 364 49.5
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 2.3e-84 316.6 343 48.4
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 2.3e-84 316.6 354 48.9
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 3.1e-84 316.2 351 50.1
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 3.1e-84 316.2 363 49.0
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 5.2e-84 315.5 352 49.4
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 5.2e-84 315.5 345 49.0
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 6.8e-84 315.1 369 50.4
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 8.9e-84 314.7 358 47.2
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.2e-83 314.3 319 53.3
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 1.5e-83 313.9 364 47.8
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 2.0e-83 313.5 362 48.9
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 3.4e-83 312.8 349 50.4
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 3.4e-83 312.8 347 50.1
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 4.4e-83 312.4 346 50.3
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 7.6e-83 311.6 282 57.4
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 6.4e-82 308.5 352 49.1
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 6.4e-82 308.5 364 48.9
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 1.1e-81 307.8 353 49.0
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 5.4e-81 305.4 359 47.4
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 7.1e-81 305.1 293 52.9
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.6e-80 303.9 391 46.0
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.6e-80 303.9 391 46.0
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.6e-80 303.9 394 45.2
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 2.1e-80 303.5 350 49.1
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 3.5e-80 302.8 356 47.8
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 4.6e-80 302.4 353 49.0
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 4.6e-80 302.4 368 46.2
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 4.6e-80 302.4 356 49.4
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 6.0e-80 302.0 367 48.0
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 6.0e-80 302.0 343 47.2
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 7.8e-80 301.6 355 49.3
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 1.3e-79 300.8 347 49.0
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 1.7e-79 300.4 353 47.6
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 8.6e-79 298.1 347 48.7
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 1.1e-78 297.7 355 48.7
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 2.5e-78 296.6 352 46.9
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 3.3e-78 296.2 352 46.6
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 5.6e-78 295.4 332 51.8
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 1.6e-77 293.9 238 61.3
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 3.6e-77 292.7 343 46.1
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 4.7e-77 292.4 339 46.3
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 1.1e-76 291.2 343 48.1
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 2.4e-76 290.0 358 46.9
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.1e-76 289.7 390 44.4
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.5e-75 287.3 349 47.3
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.2e-74 283.5 281 52.0
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 2.9e-74 283.1 286 55.9
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.1e-73 281.2 343 46.1
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 4.2e-73 279.3 308 51.0
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.6e-72 277.3 324 48.8
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 3.0e-71 273.1 344 48.3
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 4.3e-70 269.2 255 53.3
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 7.3e-70 268.5 310 50.0
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.1e-69 266.9 269 52.0
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 3.1e-68 263.1 231 56.7
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 2.0e-67 260.4 272 50.4
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 2.0e-67 260.4 272 50.4
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 1.3e-66 257.7 304 48.4
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 1.3e-66 257.7 272 50.0
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 2.2e-66 256.9 318 47.5
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 4.9e-66 255.8 309 46.0
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 5.4e-65 252.3 366 41.0
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.5e-62 243.4 278 48.6
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 6.4e-58 228.8 360 41.7
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 4.2e-57 226.1 311 40.2
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.9e-54 217.2 214 51.9
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 2.8e-53 213.4 311 43.1
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 8.1e-53 211.8 344 38.4
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 2.0e-51 207.2 259 45.6
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.4e-51 206.5 319 40.8
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.7e-48 196.8 319 37.3
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 4.6e-48 196.1 213 50.2
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 2.3e-39 167.2 117 64.1
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 3.0e-39 166.8 196 49.5
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.9e-39 166.4 181 49.7
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 3.9e-39 166.4 249 39.0
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 5.1e-39 166.0 220 42.3
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 8.7e-39 165.2 124 71.8
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 6.3e-37 159.1 448 28.1
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.5e-35 154.5 149 57.0
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 2.6e-30 137.1 146 47.9
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 1.5e-27 127.9 164 47.0
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 6.5e-26 122.5 77 68.8
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 1.6e-24 117.9 299 29.4
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.7e-24 117.1 159 45.9
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 3.0e-23 113.6 135 48.1
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 3.0e-23 113.6 201 37.8
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 1.1e-22 111.7 121 47.9
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 1.9e-17 94.4 105 42.9
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 9.4e-17 92.0 101 54.5
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.2e-16 91.7 83 53.0
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 2.1e-16 90.9 83 51.8
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 4.0e-15 86.7 107 43.9
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 1.2e-14 85.1 274 25.9
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 2.0e-14 84.3 138 33.3
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 1.3e-13 81.6 150 35.3
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 6.3e-13 79.3 78 55.1
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 1.1e-12 78.6 132 35.6
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 5.0e-10 69.7 116 34.5
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 4.2e-09 66.6 55 58.2
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 7.2e-09 65.9 43 69.8
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 1.6e-08 64.7 56 55.4
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 6.1e-08 62.8 43 69.8
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 2.3e-07 60.8 47 66.0
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 2.6e-06 57.4 49 59.2


User provided reference genes

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