Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000019g0370 Nicotiana tabacum HOM05D007498 ORTHO05D009384 7.6e-223 776.9 416 100.0
Nitab4.5_0006063g0010 Nicotiana tabacum HOM05D007498 ORTHO05D009384 3.4e-207 724.9 409 95.1
Sopen05g026100 Solanum pennellii HOM05D007498 ORTHO05D009384 1.7e-174 616.3 407 83.0
Solyc05g042050.4 Solanum lycopersicum HOM05D007498 ORTHO05D009384 1.2e-172 610.1 407 82.1
Peaxi162Scf00100g01524 Petunia axillaris HOM05D007498 ORTHO05D009384 3.0e-147 525.8 387 74.7
Dinv08726 Davidia involucrata HOM05D007498 ORTHO05D009384 5.0e-134 481.9 405 65.4
CSS0038240 Camellia sinensis var. sinensis HOM05D007498 ORTHO05D009384 7.3e-133 478.0 405 63.0
Hma1.2p1_0445F.1_g154420 Hydrangea macrophylla HOM05D007498 ORTHO05D009384 1.7e-126 456.8 405 62.2
Hma1.2p1_2381F.1_g320980 Hydrangea macrophylla HOM05D007498 ORTHO05D009384 5.1e-126 455.3 405 62.2
Actinidia13735 Actinidia chinensis HOM05D007498 ORTHO05D009384 5.2e-123 445.3 408 60.8
Cc05_g03070 Coffea canephora HOM05D007498 ORTHO05D009384 5.2e-123 445.3 392 61.5
Actinidia09741 Actinidia chinensis HOM05D007498 ORTHO05D009384 5.8e-122 441.8 405 61.0
GSVIVG01030496001 Vitis vinifera HOM05D007498 ORTHO05D009384 8.4e-121 438.0 383 60.1
TAR629G3061 Trochodendron aralioides HOM05D007498 ORTHO05D009384 1.4e-120 437.2 352 64.2
Manes.12G070200 Manihot esculenta HOM05D007498 ORTHO05D009384 6.6e-118 428.3 352 61.4
QL08p030918 Quercus lobata HOM05D007498 ORTHO05D009384 3.6e-116 422.5 398 59.0
Thecc.01G181300 Theobroma cacao HOM05D007498 ORTHO05D009384 1.2e-114 417.5 366 60.7
TWI18G0826 Tripterygium wilfordii HOM05D007498 ORTHO05D009384 1.2e-114 417.5 367 58.6
PSO541G2474 Papaver somniferum HOM05D007498 ORTHO05D009384 2.0e-114 416.8 373 60.1
Lj1A780G53 Lonicera japonica HOM05D007498 ORTHO05D009384 2.6e-114 416.4 391 57.8
Rhsim09G0054300 Rhododendron simsii HOM05D007498 ORTHO05D009384 5.8e-114 415.2 454 54.0
Eucgr.A01096 Eucalyptus grandis HOM05D007498 ORTHO05D009384 9.9e-114 414.5 354 62.4
CiPaw.03G155900 Carya illinoinensis HOM05D007498 ORTHO05D009384 1.3e-113 414.1 367 58.6
Prupe.3G211200 Prunus persica HOM05D007498 ORTHO05D009384 1.3e-113 414.1 375 58.4
Rhsim06G0166900 Rhododendron simsii HOM05D007498 ORTHO05D009384 2.2e-113 413.3 454 54.0
COL.COLO4_21864 Corchorus olitorius HOM05D007498 ORTHO05D009384 8.4e-113 411.4 379 58.6
Ciclev10015493m.g Citrus clementina HOM05D007498 ORTHO05D009384 5.4e-112 408.7 387 59.9
vmacro12166 Vaccinium macrocarpon HOM05D007498 ORTHO05D009384 5.4e-112 408.7 484 50.6
CANSAT64G1398 Cannabis sativa HOM05D007498 ORTHO05D009384 3.5e-111 406.0 353 60.1
Gorai.001G216600 Gossypium raimondii HOM05D007498 ORTHO05D009384 3.5e-111 406.0 352 61.4
RcHm_v2.0_Chr2g0158311 Rosa chinensis HOM05D007498 ORTHO05D009384 6.0e-111 405.2 371 59.3
PSO675G1300 Papaver somniferum HOM05D007498 ORTHO05D009384 1.0e-110 404.4 402 56.0
MD17G1103400 Malus domestica HOM05D007498 ORTHO05D009384 8.7e-110 401.4 353 60.3
Sc21g0001170 Simmondsia chinensis HOM05D007498 ORTHO05D009384 1.9e-109 400.2 387 55.0
Gohir.A07G187000 Gossypium hirsutum HOM05D007498 ORTHO05D009384 3.3e-109 399.4 372 58.9
Lj6g0022389 Lotus japonicus HOM05D007498 ORTHO05D009384 4.8e-108 395.6 353 58.4
HanXRQChr12g0373631 Helianthus annuus HOM05D007498 ORTHO05D009384 6.2e-108 395.2 368 57.6
Lsat_1_v5_gn_5_123880 Lactuca sativa HOM05D007498 ORTHO05D009384 8.1e-108 394.8 371 56.3
MBI19_g41387_MAGBIO Magnolia biondii HOM05D007498 ORTHO05D009384 1.4e-107 394.0 393 53.7
FAN05G5059 Fragaria x ananassa HOM05D007498 ORTHO05D009384 4.0e-107 392.5 361 58.4
PGR042G1731 Punica granatum HOM05D007498 ORTHO05D009384 4.0e-107 392.5 352 58.8
Medtr3g080260 Medicago truncatula HOM05D007498 ORTHO05D009384 1.2e-106 391.0 352 56.2
TPR.G34497 Trifolium pratense HOM05D007498 ORTHO05D009384 1.3e-105 387.5 352 56.0
FvH4_6g42420 Fragaria vesca HOM05D007498 ORTHO05D009384 3.8e-105 386.0 352 58.8
AL3G43270 Arabidopsis lyrata HOM05D007498 ORTHO05D009384 3.2e-104 382.9 369 58.5
Lsat_1_v5_gn_7_95281 Lactuca sativa HOM05D007498 ORTHO05D009384 4.2e-104 382.5 397 53.1
Phvul.006G012811 Phaseolus vulgaris HOM05D007498 ORTHO05D009384 5.4e-104 382.1 380 54.2
Carub.0003s2696 Capsella rubella HOM05D007498 ORTHO05D009384 2.7e-103 379.8 364 56.3
Nn1g03383 Nelumbo nucifera HOM05D007498 ORTHO05D009384 4.6e-103 379.0 353 56.7
Sabra14G0119400 Salix brachista HOM05D007498 ORTHO05D009384 4.6e-103 379.0 374 54.3
AT2G05755 Arabidopsis thaliana HOM05D007498 ORTHO05D009384 3.0e-102 376.3 376 56.6
THA.LOC104815344 Tarenaya hassleriana HOM05D007498 ORTHO05D009384 1.1e-101 374.4 373 56.3
Aqoxy1G04193 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 5.6e-101 372.1 357 55.2
CARHR103340 Cardamine hirsuta HOM05D007498 ORTHO05D009384 5.6e-101 372.1 372 56.7
Sp3g24210 Schrenkiella parvula HOM05D007498 ORTHO05D009384 9.6e-101 371.3 398 54.8
Sed0020195 Sechium edule HOM05D007498 ORTHO05D009384 5.3e-99 365.5 352 56.8
Aa31LG8G11370 Aethionema arabicum HOM05D007498 ORTHO05D009384 1.5e-98 364.0 368 53.5
Gohir.D07G193500 Gossypium hirsutum HOM05D007498 ORTHO05D009384 1.5e-98 364.0 305 63.0
CsaV3_6G037690 Cucumis sativus L. HOM05D007498 ORTHO05D009384 5.8e-98 362.1 364 55.8
A03p44690 Brassica napus HOM05D007498 ORTHO05D009384 3.8e-97 359.4 370 54.6
C03p55520 Brassica napus HOM05D007498 ORTHO05D009384 1.9e-96 357.1 375 53.6
BcaC01g03153 Brassica carinata HOM05D007498 ORTHO05D009384 2.4e-96 356.7 375 53.9
BcaB08g34508 Brassica carinata HOM05D007498 ORTHO05D009384 7.1e-96 355.1 370 54.6
MD09G1113300 Malus domestica HOM05D007498 ORTHO05D009384 1.2e-95 354.4 323 58.8
Gorai.001G095600 Gossypium raimondii HOM05D007498 ORTHO05D009384 7.9e-95 351.7 351 55.3
BraA03t13603Z Brassica rapa HOM05D007498 ORTHO05D009384 3.0e-94 349.7 383 52.7
BolC3t17828H Brassica oleracea HOM05D000228 ORTHO05D001122 1.1e-93 347.8 388 51.8
ATR0059G023 Amborella trichopoda HOM05D007498 ORTHO05D009384 2.1e-87 327.0 355 52.1
MELO3C014431.2 Cucumis melo HOM05D007498 ORTHO05D009384 3.3e-85 319.7 404 48.0
Duzib138G1101 Durio zibethinus HOM05D007498 ORTHO05D009384 1.8e-83 313.9 366 51.1
ClCG07G002420 Citrullus lanatus HOM05D007498 ORTHO05D009384 2.3e-78 297.0 354 50.8
ECA234G3795 Erigeron canadensis HOM05D007498 ORTHO05D009384 1.1e-75 288.1 286 57.3
Psat5g106880 Pisum sativum HOM05D007498 ORTHO05D009384 2.2e-73 280.4 251 55.8
Gohir.A07G083200 Gossypium hirsutum HOM05D007498 ORTHO05D009384 1.4e-72 277.7 269 56.5
Gohir.D07G089300 Gossypium hirsutum HOM05D007498 ORTHO05D009384 2.1e-71 273.9 270 55.9
Thhalv10002583m.g Eutrema salsugineum HOM05D007498 ORTHO05D009384 2.6e-69 266.9 378 47.4
FAN09G2551 Fragaria x ananassa HOM05D007498 ORTHO05D009384 9.7e-69 265.0 302 51.0
SEGI_23048 Sequoiadendron giganteum HOM05D007498 ORTHO05D009384 8.2e-68 261.9 366 40.7
Aqoxy1G02942 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 6.9e-67 258.8 251 54.6
Ca_16281_v3 Cicer arietinum L. HOM05D007498 ORTHO05D009384 2.2e-60 237.3 353 40.5
Potri.014G157700 Populus trichocarpa HOM05D007498 ORTHO05D009384 3.7e-60 236.5 204 58.3
CDE07G0657 Ceratophyllum demersum HOM05D000323 ORTHO05D009384 5.3e-59 232.6 324 41.4
DCAR_019260 Daucus carota HOM05D007498 ORTHO05D001133 3.7e-52 209.9 167 63.5
FAN14G0249 Fragaria x ananassa HOM05D007498 ORTHO05D001133 5.2e-46 189.5 360 38.6
MD09G1113200 Malus domestica HOM05D007498 ORTHO05D009384 2.6e-45 187.2 199 51.8
AagrBONN_evm.TU.Sc2ySwM_344.4295 Anthoceros agrestis HOM05D007498 ORTHO05D009384 1.0e-41 175.3 398 30.9
Cpa.g.sc132.15 Carica papaya HOM05D007498 ORTHO05D009384 2.1e-39 167.5 142 64.1
Mapoly0005s0243 Marchantia polymorpha HOM05D007498 ORTHO05D009384 7.5e-37 159.1 344 30.5
Pp3c17_21590 Physcomitrium patens HOM05D007498 ORTHO05D009384 1.6e-34 151.4 297 31.6
Haze_12773 Corylus avellana HOM05D007498 ORTHO05D009384 3.6e-31 140.2 202 45.5
SMO146G0054 Selaginella moellendorffii HOM05D007498 ORTHO05D009384 3.0e-30 137.1 294 31.3
VMungo0540G0169 Vigna mungo HOM05D007498 ORTHO05D009384 1.1e-27 128.6 110 59.1
Atru.chr6.3249 Acer truncatum HOM05D007498 ORTHO05D009384 7.5e-21 105.9 84 65.5
Atru.chr6.3248 Acer truncatum HOM05D007498 ORTHO05D009384 8.6e-17 92.4 70 67.1
Aqoxy1G02941 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 4.3e-16 90.1 87 57.5
VMungo0540G1885 Vigna mungo HOM05D007498 ORTHO05D009384 9.5e-08 62.4 57 52.6
Cre07.g355550 Chlamydomonas reinhardtii HOM05D024201 ORTHO05D009384 2.8e-07 60.8 318 23.3
Cfa025227 Carpinus fangiana HOM05D007498 ORTHO05D009384 1.4e-06 58.5 336 25.0


User provided reference genes

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