Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000014g0130 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.3e-80 303.1 162 100.0
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 4.9e-61 238.0 162 82.1
PGSC0003DMG400002853 Solanum tuberosum HOM05D003879 ORTHO05D003858 2.2e-29 132.9 145 57.9
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.5e-28 130.2 172 51.2
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 2.1e-27 126.3 102 61.8
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 2.6e-25 119.4 163 45.4
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 3.3e-25 119.0 97 58.8
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 5.7e-25 118.2 104 56.7
Solyc04g005580.1 Solanum lycopersicum HOM05D003879 ORTHO05D003858 7.5e-25 117.9 88 65.9
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 1.3e-24 117.1 92 59.8
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 2.8e-24 115.9 158 48.7
Sopen04g001620 Solanum pennellii HOM05D003879 ORTHO05D003858 2.8e-24 115.9 144 54.9
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 2.8e-24 115.9 70 72.9
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 3.7e-24 115.5 78 65.4
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 4.8e-24 115.2 127 47.2
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 6.3e-24 114.8 163 47.9
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.1e-23 114.0 144 50.7
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 1.1e-23 114.0 79 62.0
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 1.1e-23 114.0 151 45.0
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 1.4e-23 113.6 175 39.4
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 1.8e-23 113.2 110 50.0
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 2.4e-23 112.8 170 44.1
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 4.1e-23 112.1 139 47.5
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 4.1e-23 112.1 152 48.0
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 5.3e-23 111.7 84 64.3
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 7.0e-23 111.3 167 46.7
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 7.0e-23 111.3 130 46.2
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 7.0e-23 111.3 104 51.9
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 9.1e-23 110.9 125 49.6
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 1.2e-22 110.5 116 52.6
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 1.2e-22 110.5 79 63.3
Lsat_1_v5_gn_4_10781 Lactuca sativa HOM05D003879 ORTHO05D003858 1.2e-22 110.5 135 45.2
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 1.6e-22 110.2 158 41.8
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.6e-22 110.2 137 48.2
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 2.0e-22 109.8 88 58.0
Sopen05g007910 Solanum pennellii HOM05D003879 ORTHO05D003858 2.0e-22 109.8 86 59.3
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 2.7e-22 109.4 133 48.9
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 3.5e-22 109.0 131 49.6
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 3.5e-22 109.0 139 46.0
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 3.5e-22 109.0 86 55.8
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 3.5e-22 109.0 81 61.7
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 3.5e-22 109.0 76 61.8
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 4.5e-22 108.6 120 51.7
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 4.5e-22 108.6 101 59.4
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 5.9e-22 108.2 138 48.6
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 7.7e-22 107.8 116 52.6
ECA234G2637 Erigeron canadensis HOM05D003879 ORTHO05D003858 7.7e-22 107.8 99 55.6
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 7.7e-22 107.8 119 47.1
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.0e-21 107.5 80 63.8
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 1.0e-21 107.5 78 60.3
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 1.0e-21 107.5 146 46.6
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 1.3e-21 107.1 80 58.8
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 1.3e-21 107.1 145 44.1
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 1.3e-21 107.1 80 56.2
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 1.3e-21 107.1 121 51.2
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 1.7e-21 106.7 147 45.6
VMungo0251G2410 Vigna mungo HOM05D003879 ORTHO05D003858 1.7e-21 106.7 85 57.6
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 2.9e-21 105.9 146 44.5
HanXRQChr12g0361951 Helianthus annuus HOM05D003879 ORTHO05D003858 2.9e-21 105.9 87 59.8
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 2.9e-21 105.9 80 62.5
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 2.9e-21 105.9 145 48.3
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 3.8e-21 105.5 74 62.2
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 3.8e-21 105.5 135 44.4
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 5.0e-21 105.1 90 57.8
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 5.0e-21 105.1 149 42.3
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 5.0e-21 105.1 149 42.3
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 5.0e-21 105.1 74 60.8
Lsat_1_v5_gn_8_48881 Lactuca sativa HOM05D003879 ORTHO05D003858 5.0e-21 105.1 94 55.3
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 6.5e-21 104.8 67 65.7
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 6.5e-21 104.8 91 52.7
Aqoxy5G03435 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 8.5e-21 104.4 84 59.5
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 1.1e-20 104.0 128 49.2
Prupe.5G003300 Prunus persica HOM05D003879 ORTHO05D003858 1.1e-20 104.0 156 42.9
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 1.5e-20 103.6 168 41.1
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 1.5e-20 103.6 76 63.2
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 1.5e-20 103.6 78 59.0
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 1.5e-20 103.6 90 55.6
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 1.9e-20 103.2 113 52.2
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 1.9e-20 103.2 162 42.0
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 2.5e-20 102.8 80 56.2
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 3.2e-20 102.4 154 46.8
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 4.2e-20 102.1 80 57.5
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 4.2e-20 102.1 119 45.4
RhsimUnG0183500 Rhododendron simsii HOM05D003879 ORTHO05D003858 5.5e-20 101.7 153 41.2
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 7.2e-20 101.3 84 54.8
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 9.4e-20 100.9 96 54.2
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 9.4e-20 100.9 119 42.0
Lj3P1034T75 Lonicera japonica HOM05D003879 ORTHO05D003858 1.2e-19 100.5 66 66.7
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 1.6e-19 100.1 99 49.5
RcHm_v2.0_Chr1g0342011 Rosa chinensis HOM05D003879 ORTHO05D003858 1.6e-19 100.1 78 56.4
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 2.1e-19 99.8 137 44.5
ECA233G3198 Erigeron canadensis HOM05D003879 ORTHO05D003858 2.1e-19 99.8 89 55.1
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 2.7e-19 99.4 140 47.1
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 2.7e-19 99.4 122 43.4
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 3.6e-19 99.0 156 40.4
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 4.7e-19 98.6 76 59.2
Phvul.005G037600 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 4.7e-19 98.6 84 52.4
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 4.7e-19 98.6 177 37.3
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 6.1e-19 98.2 135 43.0
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 8.0e-19 97.8 146 42.5
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 1.0e-18 97.4 143 41.3
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 1.4e-18 97.1 153 45.8
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 1.4e-18 97.1 153 45.8
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.4e-18 97.1 135 45.2
Phvul.002G169800 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 1.4e-18 97.1 108 46.3
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 2.3e-18 96.3 140 44.3
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 3.0e-18 95.9 132 49.2
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 3.0e-18 95.9 135 40.7
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 3.0e-18 95.9 138 46.4
SalBow1G6087 Salvia bowleyana HOM05D003879 ORTHO05D003858 3.0e-18 95.9 70 65.7
SalBow6G3484 Salvia bowleyana HOM05D003879 ORTHO05D003858 3.0e-18 95.9 70 65.7
SalBow6G4156 Salvia bowleyana HOM05D003879 ORTHO05D003858 3.0e-18 95.9 70 65.7
SalBow8G1644 Salvia bowleyana HOM05D003879 ORTHO05D003858 3.0e-18 95.9 70 65.7
HPP92_007611 Vanilla planifolia HOM05D003879 ORTHO05D003858 3.0e-18 95.9 84 51.2
PSO017G6566 Papaver somniferum HOM05D003879 ORTHO05D003858 5.2e-18 95.1 78 55.1
PSO478G4561 Papaver somniferum HOM05D003879 ORTHO05D003858 5.2e-18 95.1 78 55.1
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 6.8e-18 94.7 132 45.5
Cc11_g12680 Coffea canephora HOM05D003879 ORTHO05D003858 1.2e-17 94.0 164 40.9
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 1.2e-17 94.0 131 45.0
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 1.2e-17 94.0 78 51.3
Os03g0647400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 1.5e-17 93.6 83 50.6
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 2.0e-17 93.2 97 50.5
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 2.6e-17 92.8 76 51.3
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 3.4e-17 92.4 85 51.8
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 3.4e-17 92.4 72 55.6
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 3.4e-17 92.4 73 56.2
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 3.4e-17 92.4 73 56.2
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 5.7e-17 91.7 97 47.4
Potri.013G109100 Populus trichocarpa HOM05D003879 ORTHO05D003858 7.5e-17 91.3 72 55.6
Zm00001eb300270 Zea mays HOM05D003879 ORTHO05D003858 7.5e-17 91.3 72 51.4
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 9.8e-17 90.9 149 40.9
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 1.3e-16 90.5 94 47.9
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 1.3e-16 90.5 94 47.9
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 1.3e-16 90.5 94 47.9
Rhsim05G0092100 Rhododendron simsii HOM05D003879 ORTHO05D003858 1.3e-16 90.5 87 47.1
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 2.2e-16 89.7 76 55.3
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 2.8e-16 89.4 81 49.4
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 3.7e-16 89.0 94 46.8
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 4.8e-16 88.6 108 44.4
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 4.8e-16 88.6 108 44.4
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 4.8e-16 88.6 72 51.4
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 8.3e-16 87.8 95 49.5
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 1.1e-15 87.4 89 48.3
AUR62005832 Chenopodium quinoa HOM05D003879 ORTHO05D003858 1.4e-15 87.0 92 46.7
AUR62032825 Chenopodium quinoa HOM05D000508 ORTHO05D000371 4.1e-15 85.5 78 51.3
Os07g0158400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 4.1e-15 85.5 95 44.2
A09p62510 Brassica napus HOM05D003879 ORTHO05D003858 7.0e-15 84.7 94 45.7
Lj6C784G16 Lonicera japonica HOM05D000508 ORTHO05D006805 1.6e-14 83.6 64 59.4
Zm00001eb050330 Zea mays HOM05D003879 ORTHO05D003858 3.5e-14 82.4 98 44.9
Zm00001eb218620 Zea mays HOM05D003879 ORTHO05D003858 3.5e-14 82.4 99 43.4
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 6.5e-13 78.2 153 34.0
FvH4_5g26420 Fragaria vesca HOM05D003879 ORTHO05D003858 2.5e-12 76.3 106 41.5
FAN13G1900 Fragaria x ananassa HOM05D003879 ORTHO05D003858 2.5e-12 76.3 106 41.5
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 2.5e-12 76.3 161 36.6
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 2.5e-12 76.3 161 36.6
Mapoly0084s0083 Marchantia polymorpha HOM05D003879 ORTHO05D003858 1.6e-11 73.6 94 39.4
Pp3c16_17450 Physcomitrium patens HOM05D003879 ORTHO05D003858 2.7e-11 72.8 144 32.6
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 3.6e-11 72.4 83 42.2
CBR_g26201 Chara braunii HOM05D003879 ORTHO05D003858 1.8e-10 70.1 85 41.2
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 2.3e-10 69.7 142 33.8
FAN18G4377 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.2e-09 67.4 165 35.2
Sp1g12000 Schrenkiella parvula HOM05D011464 ORTHO05D003858 4.4e-09 65.5 67 47.8
SMO353G0120 Selaginella moellendorffii HOM05D003879 ORTHO05D003858 4.4e-09 65.5 70 44.3
AL1G25890 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 4.9e-08 62.0 66 42.4
Mapoly0074s0048 Marchantia polymorpha HOM05D003879 ORTHO05D003858 4.1e-07 58.9 70 37.1
CARHR014440 Cardamine hirsuta HOM05D003879 ORTHO05D003858 2.7e-06 56.2 58 37.9
Cre14.g619950 Chlamydomonas reinhardtii HOM05D003879 ORTHO05D003858 4.5e-06 55.5 77 39.0
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 7.7e-06 54.7 68 38.2


User provided reference genes

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