Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 7.5e-104 380.6 198 100.0
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.9e-63 245.7 183 77.0
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 6.7e-60 234.6 188 72.3
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 1.6e-58 229.9 190 72.1
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 2.8e-58 229.2 190 71.6
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.4e-57 226.9 187 71.1
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 2.4e-57 226.1 158 79.7
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 6.9e-57 224.6 184 69.0
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 9.0e-57 224.2 182 68.7
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 7.6e-56 221.1 187 69.0
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 7.6e-56 221.1 184 68.5
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 3.2e-54 215.7 183 67.8
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 1.4e-49 200.3 184 64.7
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 9.0e-49 197.6 188 63.3
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.0e-47 194.1 185 63.2
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 2.0e-43 179.9 182 55.5
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 1.7e-42 176.8 145 64.8
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 2.2e-42 176.4 162 57.4
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 2.8e-42 176.0 137 64.2
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 3.7e-42 175.6 138 68.1
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 6.3e-42 174.9 175 56.0
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 1.1e-41 174.1 185 55.7
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 1.1e-41 174.1 199 52.8
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 1.8e-41 173.3 126 70.6
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 2.4e-41 172.9 166 59.0
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 2.4e-41 172.9 180 55.6
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 3.1e-41 172.6 162 58.6
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 4.1e-41 172.2 165 60.6
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 5.3e-41 171.8 151 61.6
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.2e-40 170.6 142 62.0
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.5e-40 170.2 142 61.3
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.5e-40 170.2 142 61.3
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.5e-40 170.2 142 61.3
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.0e-40 169.9 172 57.6
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 2.6e-40 169.5 147 61.9
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 4.5e-40 168.7 169 57.4
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 4.5e-40 168.7 144 61.1
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 4.5e-40 168.7 160 55.0
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.9e-40 168.3 172 57.6
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 7.7e-40 167.9 142 61.3
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 7.7e-40 167.9 142 61.3
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 7.7e-40 167.9 187 56.1
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 1.0e-39 167.5 161 59.0
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 1.0e-39 167.5 110 76.4
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 1.0e-39 167.5 164 56.1
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.3e-39 167.2 139 62.6
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 1.7e-39 166.8 170 57.1
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 2.2e-39 166.4 175 55.4
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 2.9e-39 166.0 138 63.8
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 3.8e-39 165.6 167 56.3
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 3.8e-39 165.6 164 57.9
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 5.0e-39 165.2 147 59.9
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 5.0e-39 165.2 139 62.6
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 5.0e-39 165.2 163 56.4
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 5.0e-39 165.2 163 56.4
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 6.5e-39 164.9 177 53.7
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 6.5e-39 164.9 163 57.1
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 6.5e-39 164.9 166 56.6
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 6.5e-39 164.9 168 57.7
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 8.5e-39 164.5 170 56.5
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 8.5e-39 164.5 170 56.5
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 8.5e-39 164.5 147 59.9
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 8.5e-39 164.5 149 58.4
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.4e-38 163.7 165 55.2
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 1.9e-38 163.3 178 53.4
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 1.9e-38 163.3 150 60.0
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 1.9e-38 163.3 171 55.6
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 2.5e-38 162.9 146 60.3
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 2.5e-38 162.9 176 53.4
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 3.2e-38 162.5 130 66.2
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 3.2e-38 162.5 137 61.3
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 3.2e-38 162.5 159 53.5
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 4.2e-38 162.2 141 58.2
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 4.2e-38 162.2 140 62.9
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 4.2e-38 162.2 162 57.4
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 5.5e-38 161.8 113 71.7
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 7.2e-38 161.4 143 58.7
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 1.2e-37 160.6 136 61.0
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 1.6e-37 160.2 163 54.6
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 1.6e-37 160.2 139 61.9
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.6e-37 160.2 148 57.4
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 1.6e-37 160.2 147 58.5
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 2.1e-37 159.8 124 64.5
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 2.1e-37 159.8 166 56.0
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 2.1e-37 159.8 141 58.9
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 2.1e-37 159.8 161 53.4
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 2.7e-37 159.5 124 63.7
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 2.7e-37 159.5 172 52.3
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 2.7e-37 159.5 140 60.7
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 2.7e-37 159.5 178 50.6
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 2.7e-37 159.5 138 62.3
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 3.6e-37 159.1 164 53.0
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 4.7e-37 158.7 140 62.1
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 4.7e-37 158.7 140 61.4
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 4.7e-37 158.7 118 66.1
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 4.7e-37 158.7 123 64.2
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 7.9e-37 157.9 151 56.3
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 1.0e-36 157.5 174 54.0
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 1.0e-36 157.5 174 54.0
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.0e-36 157.5 168 52.4
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 1.0e-36 157.5 118 66.9
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 1.8e-36 156.8 151 57.6
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 1.8e-36 156.8 169 52.7
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 2.3e-36 156.4 165 55.2
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 2.3e-36 156.4 118 66.1
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 2.3e-36 156.4 159 56.0
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 2.3e-36 156.4 162 53.1
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 3.9e-36 155.6 148 56.8
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 3.9e-36 155.6 166 54.2
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 6.7e-36 154.8 170 54.1
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 6.7e-36 154.8 165 52.7
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 6.7e-36 154.8 150 57.3
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 8.8e-36 154.5 181 51.4
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.5e-35 153.7 163 54.6
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 2.0e-35 153.3 118 64.4
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.6e-35 152.9 146 56.2
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 3.3e-35 152.5 126 60.3
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 7.4e-35 151.4 111 69.4
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 7.4e-35 151.4 165 50.3
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 7.4e-35 151.4 104 73.1
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 1.3e-34 150.6 128 58.6
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 6.3e-34 148.3 129 58.9
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 2.4e-33 146.4 161 54.0
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 7.0e-33 144.8 169 49.7
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.2e-32 144.1 170 50.6
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.7e-31 140.2 91 74.7
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 2.2e-31 139.8 91 72.5
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 3.8e-31 139.0 168 48.2
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 5.0e-31 138.7 144 53.5
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 6.5e-31 138.3 92 70.7
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 8.5e-31 137.9 107 67.3
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 8.5e-31 137.9 119 57.1
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 1.1e-30 137.5 109 59.6
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 4.2e-30 135.6 130 57.7
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 5.5e-30 135.2 91 70.3
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 5.5e-30 135.2 151 49.0
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 9.4e-30 134.4 114 61.4
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 3.6e-29 132.5 91 69.2
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 6.1e-29 131.7 107 62.6
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 8.0e-29 131.3 91 70.3
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 1.8e-28 130.2 142 47.9
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 2.8e-26 122.9 113 61.9
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 4.8e-26 122.1 104 54.8
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 6.3e-26 121.7 134 53.0
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.7e-24 116.3 147 49.0
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.0e-23 114.4 134 50.7
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 3.6e-21 105.9 107 50.5
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 7.5e-19 98.2 112 51.8
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 9.8e-19 97.8 72 72.2
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 3.7e-18 95.9 59 79.7
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 1.1e-17 94.4 59 76.3
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 2.4e-17 93.2 95 45.3
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 3.1e-17 92.8 110 50.0
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 5.4e-17 92.0 78 56.4
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 1.2e-16 90.9 134 42.5
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 3.8e-15 85.9 58 72.4
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 1.1e-14 84.3 101 41.6
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 4.2e-14 82.4 70 60.0
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 1.6e-13 80.5 59 67.8
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 2.1e-13 80.1 106 46.2
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 2.9e-07 59.7 82 43.9


User provided reference genes

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