Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 5.9e-82 307.8 189 100.0
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 9.2e-59 230.7 167 90.4
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 1.5e-53 213.4 156 74.4
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 1.5e-53 213.4 156 74.4
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 4.1e-51 205.3 157 72.6
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 4.1e-51 205.3 166 69.9
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 2.7e-50 202.6 166 69.3
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 1.5e-48 196.8 160 66.9
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 1.1e-46 190.7 170 62.4
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 3.1e-46 189.1 171 61.4
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 4.4e-45 185.3 157 63.7
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 9.9e-45 184.1 157 64.3
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 1.3e-44 183.7 170 61.8
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 2.9e-44 182.6 177 57.6
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 2.9e-44 182.6 163 62.6
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 2.9e-44 182.6 167 60.5
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 3.8e-44 182.2 167 59.9
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 6.4e-44 181.4 162 63.0
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.4e-44 181.4 162 63.0
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 8.4e-44 181.0 164 61.0
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.1e-43 180.6 181 56.9
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.1e-43 180.6 181 56.9
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.1e-43 180.6 163 62.6
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 1.1e-43 180.6 167 61.1
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 1.9e-43 179.9 161 63.4
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 3.2e-43 179.1 156 61.5
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 3.2e-43 179.1 167 59.3
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 4.2e-43 178.7 167 59.3
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 4.2e-43 178.7 160 61.9
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 5.4e-43 178.3 166 59.0
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 5.4e-43 178.3 171 61.4
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 7.1e-43 177.9 167 58.7
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 7.1e-43 177.9 173 59.0
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 9.2e-43 177.6 160 61.9
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 9.2e-43 177.6 160 61.9
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 9.2e-43 177.6 168 60.7
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 9.2e-43 177.6 156 62.8
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.2e-42 177.2 157 62.4
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.2e-42 177.2 157 62.4
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 1.6e-42 176.8 157 61.1
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 1.6e-42 176.8 151 62.9
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 2.1e-42 176.4 167 58.7
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 2.1e-42 176.4 162 59.3
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 2.7e-42 176.0 154 64.3
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 2.7e-42 176.0 150 64.7
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 3.5e-42 175.6 150 64.7
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 3.5e-42 175.6 167 57.5
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 7.8e-42 174.5 167 59.3
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.7e-41 173.3 157 62.4
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 2.3e-41 172.9 150 63.3
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 2.3e-41 172.9 150 63.3
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 3.9e-41 172.2 170 57.6
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 5.1e-41 171.8 162 58.6
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 6.6e-41 171.4 164 61.0
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 6.6e-41 171.4 157 60.5
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 8.7e-41 171.0 162 58.6
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 8.7e-41 171.0 164 59.8
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.1e-40 170.6 124 74.2
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 1.1e-40 170.6 146 66.4
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 1.9e-40 169.9 168 58.9
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 1.9e-40 169.9 168 58.9
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 1.9e-40 169.9 168 58.9
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 1.9e-40 169.9 152 61.2
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 1.9e-40 169.9 156 59.6
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.9e-40 169.9 172 56.4
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 1.9e-40 169.9 130 70.0
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.5e-40 169.5 165 58.2
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 2.5e-40 169.5 163 60.7
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 4.3e-40 168.7 142 64.1
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.3e-40 168.7 167 56.9
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 5.6e-40 168.3 157 59.2
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 5.6e-40 168.3 152 59.9
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 5.6e-40 168.3 159 58.5
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 7.3e-40 167.9 156 59.6
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 9.6e-40 167.5 162 58.6
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 1.2e-39 167.2 153 74.5
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 1.2e-39 167.2 173 55.5
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 2.1e-39 166.4 183 54.1
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 2.1e-39 166.4 158 58.9
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.8e-39 166.0 165 57.0
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.8e-39 166.0 165 57.0
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 3.6e-39 165.6 157 58.6
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 3.6e-39 165.6 160 57.5
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.7e-39 165.2 125 71.2
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 4.7e-39 165.2 156 60.3
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 6.2e-39 164.9 160 56.2
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 6.2e-39 164.9 157 58.6
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 6.2e-39 164.9 137 65.7
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 8.1e-39 164.5 157 58.0
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 8.1e-39 164.5 168 56.0
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 1.8e-38 163.3 149 61.7
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.8e-38 163.3 162 58.0
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 2.4e-38 162.9 151 58.9
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 2.4e-38 162.9 155 58.1
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 2.4e-38 162.9 126 69.8
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.0e-38 162.2 171 55.0
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 5.3e-38 161.8 151 57.0
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 1.2e-37 160.6 144 59.7
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 1.2e-37 160.6 167 55.1
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 4.4e-37 158.7 117 72.6
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 1.7e-36 156.8 157 55.4
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 2.2e-36 156.4 144 59.0
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 3.8e-36 155.6 151 58.3
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 4.9e-36 155.2 128 65.6
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 8.4e-36 154.5 159 56.0
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-35 153.7 141 60.3
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 3.2e-35 152.5 141 59.6
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 5.4e-35 151.8 139 59.7
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 5.4e-35 151.8 156 55.1
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 7.1e-35 151.4 161 54.0
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 7.1e-35 151.4 163 54.0
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 7.1e-35 151.4 163 54.0
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 9.3e-35 151.0 141 58.9
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 9.3e-35 151.0 161 54.0
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.2e-34 150.6 123 65.9
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 1.6e-34 150.2 161 53.4
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 2.1e-34 149.8 141 58.2
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.1e-34 149.8 159 55.3
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 2.1e-34 149.8 178 49.4
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 4.6e-34 148.7 129 63.6
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 7.8e-34 147.9 141 58.2
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 7.8e-34 147.9 154 53.2
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 1.7e-33 146.7 162 51.2
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-32 144.1 134 58.2
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 1.1e-32 144.1 141 58.2
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 1.1e-32 144.1 141 58.2
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.3e-32 142.5 171 50.3
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 7.3e-32 141.4 139 57.6
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 1.6e-31 140.2 106 67.9
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 1.3e-28 130.6 124 56.5
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 1.1e-27 127.5 98 71.4
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 2.4e-27 126.3 116 55.2
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.2e-26 124.0 115 54.8
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 1.5e-24 117.1 161 47.2
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 1.9e-24 116.7 117 54.7
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 2.5e-24 116.3 123 55.3
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 7.4e-24 114.8 107 57.9
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 9.6e-24 114.4 109 56.9
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 1.8e-22 110.2 153 45.1
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 1.7e-20 103.6 109 54.1
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.9e-20 102.8 92 62.0
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 1.4e-19 100.5 166 43.4
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 1.9e-19 100.1 109 51.4
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.2e-19 99.0 96 59.4
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.2e-19 99.0 96 59.4
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 7.9e-18 94.7 141 44.0
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.3e-17 93.2 85 61.2
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 1.4e-14 84.0 116 42.2
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.4e-14 83.2 78 57.7
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.0e-14 82.4 89 53.9
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.5e-13 80.5 67 65.7
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 3.8e-12 75.9 76 55.3
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 4.9e-12 75.5 67 62.7
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 4.9e-12 75.5 72 56.9
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 5.5e-11 72.0 79 48.1
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 8.7e-09 64.7 44 72.7
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 9.7e-08 61.2 66 50.0
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 3.7e-07 59.3 61 55.7
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-06 57.4 62 54.8
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 1.8e-06 57.0 47 59.6


User provided reference genes

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