Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000008g0680 Nicotiana tabacum HOM05D003540 ORTHO05D004012 2.3e-108 395.6 198 100.0
Nitab4.5_0013778g0010 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.6e-69 266.5 176 80.7
Nitab4.5_0001078g0070 Nicotiana tabacum HOM05D003540 ORTHO05D004012 3.8e-39 165.6 192 52.1
PGSC0003DMG401002119 Solanum tuberosum HOM05D003540 ORTHO05D004012 6.1e-37 158.3 85 92.9
Peaxi162Scf00139g00825 Petunia axillaris HOM05D003540 ORTHO05D004012 7.9e-37 157.9 85 92.9
CAN.G1538.2 Capsicum annuum HOM05D003540 ORTHO05D004012 3.0e-36 156.0 85 91.8
Solyc02g063075.1 Solanum lycopersicum HOM05D003540 ORTHO05D004012 5.1e-36 155.2 85 91.8
Sopen02g014150 Solanum pennellii HOM05D003540 ORTHO05D004012 5.1e-36 155.2 85 91.8
PGSC0003DMG400024178 Solanum tuberosum HOM05D003540 ORTHO05D004012 5.1e-36 155.2 85 91.8
Sopen04g029890 Solanum pennellii HOM05D003540 ORTHO05D004012 1.1e-35 154.1 85 90.6
Nitab4.5_0001984g0080 Nicotiana tabacum HOM05D003540 ORTHO05D004012 2.6e-35 152.9 85 90.6
Solyc04g074940.4 Solanum lycopersicum HOM05D003540 ORTHO05D004012 5.7e-35 151.8 85 89.4
CAN.G460.5 Capsicum annuum HOM05D003540 ORTHO05D004012 9.7e-35 151.0 85 89.4
Rhsim06G0075200 Rhododendron simsii HOM05D003540 ORTHO05D004012 8.2e-34 147.9 85 85.9
Actinidia29606 Actinidia chinensis HOM05D003540 ORTHO05D004012 2.4e-33 146.4 85 85.9
CSS0040126 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 4.1e-33 145.6 85 85.9
Peaxi162Scf00725g00536 Petunia axillaris HOM05D003540 ORTHO05D004012 7.0e-33 144.8 85 85.9
Cc10_g15500 Coffea canephora HOM05D003540 ORTHO05D004012 5.9e-32 141.7 85 82.4
Dinv44828 Davidia involucrata HOM05D003540 ORTHO05D004012 1.0e-31 141.0 85 82.4
Dinv42647 Davidia involucrata HOM05D003540 ORTHO05D004012 1.3e-31 140.6 80 87.5
HanXRQChr08g0226211 Helianthus annuus HOM05D003540 ORTHO05D004012 3.8e-31 139.0 85 82.4
CSS0047709 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 3.2e-30 136.0 85 80.0
HanXRQChr02g0046851 Helianthus annuus HOM05D003540 ORTHO05D004012 3.2e-30 136.0 85 81.2
ECA234G0792 Erigeron canadensis HOM05D003540 ORTHO05D004012 5.5e-30 135.2 85 80.0
Lsat_1_v5_gn_1_2480 Lactuca sativa HOM05D003540 ORTHO05D004012 5.5e-30 135.2 85 80.0
vmacro04682 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 1.2e-29 134.0 91 79.1
ECA247G1419 Erigeron canadensis HOM05D003540 ORTHO05D004012 3.6e-29 132.5 85 78.8
Eucgr.F00400 Eucalyptus grandis HOM05D003540 ORTHO05D004012 5.2e-28 128.6 87 73.6
Rhsim07G0209200 Rhododendron simsii HOM05D003540 ORTHO05D004012 6.7e-28 128.3 85 77.6
CsaV3_3G047800 Cucumis sativus L. HOM05D003540 ORTHO05D004012 8.8e-28 127.9 162 50.6
Aa31LG6G11550 Aethionema arabicum HOM05D003540 ORTHO05D004012 1.1e-27 127.5 179 45.3
Ciclev10002815m.g Citrus clementina HOM05D003540 ORTHO05D004012 3.7e-26 122.5 89 75.3
Gohir.D06G033200 Gossypium hirsutum HOM05D003540 ORTHO05D004012 3.7e-26 122.5 88 76.1
Gorai.010G036600 Gossypium raimondii HOM05D003540 ORTHO05D004012 3.7e-26 122.5 88 76.1
BolC7t42159H Brassica oleracea HOM05D003540 ORTHO05D004012 4.8e-26 122.1 173 44.5
PGR031G1594 Punica granatum HOM05D003540 ORTHO05D004012 4.8e-26 122.1 86 73.3
Duzib093G0958 Durio zibethinus HOM05D003540 ORTHO05D004012 6.3e-26 121.7 88 76.1
Thecc.08G066000 Theobroma cacao HOM05D003540 ORTHO05D004012 8.2e-26 121.3 88 75.0
GSVIVG01009122001 Vitis vinifera HOM05D003540 ORTHO05D004012 1.4e-25 120.6 85 68.2
COL.COLO4_11964 Corchorus olitorius HOM05D003540 ORTHO05D004012 1.8e-25 120.2 88 75.0
Cpa.g.sc36.201 Carica papaya HOM05D003540 ORTHO05D004012 3.1e-25 119.4 87 73.6
Gohir.A06G032664 Gossypium hirsutum HOM05D003540 ORTHO05D004012 3.1e-25 119.4 88 72.7
Nitab4.5_0007681g0020 Nicotiana tabacum HOM05D003540 ORTHO05D004012 3.1e-25 119.4 61 96.7
THA.LOC104812634 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 3.1e-25 119.4 86 74.4
QL09p016915 Quercus lobata HOM05D003540 ORTHO05D004012 7.0e-25 118.2 85 68.2
TAR625G0842 Trochodendron aralioides HOM05D003540 ORTHO05D004012 7.0e-25 118.2 83 68.7
THA.LOC104820588 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 1.2e-24 117.5 86 73.3
CANSAT25G0001 Cannabis sativa HOM05D003540 ORTHO05D004012 2.0e-24 116.7 74 78.4
Duzib116G0544 Durio zibethinus HOM05D003540 ORTHO05D004012 2.0e-24 116.7 88 75.0
Manes.18G062100 Manihot esculenta HOM05D003540 ORTHO05D004012 2.7e-24 116.3 86 69.8
TAR381G0359 Trochodendron aralioides HOM05D003540 ORTHO05D004012 2.7e-24 116.3 83 68.7
Aa31LG5G21170 Aethionema arabicum HOM05D003540 ORTHO05D004012 3.5e-24 115.9 86 70.9
EL10Ac3g06094 Beta vulgaris HOM05D003540 ORTHO05D004012 3.5e-24 115.9 73 79.5
Aqoxy6G00672 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 4.5e-24 115.5 80 68.8
CSS0040517 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 4.5e-24 115.5 85 70.6
BolC3t19806H Brassica oleracea HOM05D003540 ORTHO05D004012 7.7e-24 114.8 89 66.3
AL7G41530 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 1.0e-23 114.4 89 66.3
BcaC06g35396 Brassica carinata HOM05D003540 ORTHO05D004012 1.0e-23 114.4 90 66.7
BcaNung06434 Brassica carinata HOM05D003540 ORTHO05D004012 1.0e-23 114.4 86 68.6
BraA08t34486Z Brassica rapa HOM05D003540 ORTHO05D004012 1.0e-23 114.4 86 68.6
Potri.005G159600 Populus trichocarpa HOM05D003540 ORTHO05D004012 1.0e-23 114.4 87 71.3
TWI12G0801 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 1.0e-23 114.4 87 70.1
Atru.chr13.1061 Acer truncatum HOM05D003540 ORTHO05D004012 1.3e-23 114.0 84 73.8
AT4G14600 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 1.7e-23 113.6 89 67.4
C03p75500 Brassica napus HOM05D003540 ORTHO05D004012 2.2e-23 113.2 86 67.4
BraA07t28888Z Brassica rapa HOM05D003540 ORTHO05D004012 2.2e-23 113.2 85 69.4
Hma1.2p1_0961F.1_g241695 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 2.2e-23 113.2 85 68.2
Hma1.2p1_0961F.1_g241710 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 2.2e-23 113.2 85 68.2
BcaNung06754 Brassica carinata HOM05D003540 ORTHO05D004012 3.8e-23 112.5 86 66.3
Duzib041G0585 Durio zibethinus HOM05D003540 ORTHO05D004012 3.8e-23 112.5 88 72.7
Thhalv10009065m.g Eutrema salsugineum HOM05D003540 ORTHO05D004012 3.8e-23 112.5 86 68.6
Sp1g25000 Schrenkiella parvula HOM05D003540 ORTHO05D004012 5.0e-23 112.1 86 67.4
A08p25340 Brassica napus HOM05D003540 ORTHO05D004012 8.5e-23 111.3 84 69.0
CiPaw.07G169400 Carya illinoinensis HOM05D003540 ORTHO05D004012 8.5e-23 111.3 83 67.5
Sc23g0000530 Simmondsia chinensis HOM05D003540 ORTHO05D004012 8.5e-23 111.3 73 75.3
Aqoxy1G03155 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 1.5e-22 110.5 85 65.9
CARHR028280 Cardamine hirsuta HOM05D003540 ORTHO05D004012 1.5e-22 110.5 89 65.2
SalBow6G2258 Salvia bowleyana HOM05D003540 ORTHO05D004012 1.5e-22 110.5 75 74.7
SalBow6G4055 Salvia bowleyana HOM05D003540 ORTHO05D004012 1.5e-22 110.5 75 74.7
Carub.0001s2726 Capsella rubella HOM05D003540 ORTHO05D004012 1.9e-22 110.2 89 64.0
BcaB03g13908 Brassica carinata HOM05D003540 ORTHO05D004012 2.5e-22 109.8 86 66.3
BcaB07g32485 Brassica carinata HOM05D003540 ORTHO05D004012 2.5e-22 109.8 86 65.1
A07p10970 Brassica napus HOM05D003540 ORTHO05D004012 2.5e-22 109.8 85 68.2
Oeu024713.1 Olea europaea HOM05D003540 ORTHO05D004012 2.5e-22 109.8 75 74.7
Prupe.1G526600 Prunus persica HOM05D003540 ORTHO05D004012 3.2e-22 109.4 72 73.6
Nn1g08254 Nelumbo nucifera HOM05D003540 ORTHO05D004012 4.2e-22 109.0 90 60.0
MSTRG.9688 Avicennia marina HOM05D003540 ORTHO05D004012 5.5e-22 108.6 75 73.3
Potri.002G102400 Populus trichocarpa HOM05D003540 ORTHO05D004012 9.4e-22 107.8 73 72.6
Sabra05G0121300 Salix brachista HOM05D003540 ORTHO05D004012 9.4e-22 107.8 85 64.7
Sed0022834 Sechium edule HOM05D003540 ORTHO05D004012 9.4e-22 107.8 88 64.8
Migut.D01990 Erythranthe guttata HOM05D003540 ORTHO05D004012 1.6e-21 107.1 72 73.6
Ah.05g170560 Amaranthus hybridus HOM05D003540 ORTHO05D004012 2.1e-21 106.7 73 71.2
Sc01g0000960 Simmondsia chinensis HOM05D003540 ORTHO05D004012 2.1e-21 106.7 66 77.3
AT1G29060 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 2.7e-21 106.3 86 64.0
AUR62002400 Chenopodium quinoa HOM05D003540 ORTHO05D004012 2.7e-21 106.3 74 74.3
MBI06_g18789_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 2.7e-21 106.3 83 63.9
AL1G42780 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 3.6e-21 105.9 89 62.9
Oeu013165.1 Olea europaea HOM05D003540 ORTHO05D004012 3.6e-21 105.9 76 71.1
Manes.02G147700 Manihot esculenta HOM05D003540 ORTHO05D004012 4.7e-21 105.5 85 67.1
BcaC05g26921 Brassica carinata HOM05D003540 ORTHO05D004012 8.0e-21 104.8 86 64.0
C05p27740 Brassica napus HOM05D003540 ORTHO05D004012 8.0e-21 104.8 86 64.0
AUR62019000 Chenopodium quinoa HOM05D003540 ORTHO05D004012 1.0e-20 104.4 68 75.0
AUR62027843 Chenopodium quinoa HOM05D003540 ORTHO05D004012 1.0e-20 104.4 68 75.0
MELO3C003542.2 Cucumis melo HOM05D003540 ORTHO05D004012 1.4e-20 104.0 88 64.8
arahy.Tifrunner.gnm1.ann1.Q67T8J Arachis hypogaea HOM05D003540 ORTHO05D004012 5.2e-20 102.1 82 67.1
BolC5t31494H Brassica oleracea HOM05D003540 ORTHO05D004012 6.8e-20 101.7 84 64.3
MBI02_g18294_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 6.8e-20 101.7 83 61.4
VMungo0647G0300 Vigna mungo HOM05D003540 ORTHO05D004012 6.8e-20 101.7 86 62.8
Glyma.04G097000 Glycine max HOM05D003540 ORTHO05D004012 8.8e-20 101.3 86 64.0
GSVIVG01003618001 Vitis vinifera HOM05D003540 ORTHO05D004012 8.8e-20 101.3 67 73.1
Glyma.06G098800 Glycine max HOM05D003540 ORTHO05D004012 1.2e-19 100.9 86 65.1
Nn1g05484 Nelumbo nucifera HOM05D003540 ORTHO05D004012 1.2e-19 100.9 65 75.4
arahy.Tifrunner.gnm1.ann1.QI1MS0 Arachis hypogaea HOM05D003540 ORTHO05D004012 1.5e-19 100.5 82 65.9
DCAR_001735 Daucus carota HOM05D003540 ORTHO05D004012 2.6e-19 99.8 71 74.6
Sed0006262 Sechium edule HOM05D003540 ORTHO05D004012 2.6e-19 99.8 88 61.4
TWI74G0452 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 2.6e-19 99.8 69 68.1
Phvul.008G178700 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 3.4e-19 99.4 86 62.8
Glyma.14G179100 Glycine max HOM05D003540 ORTHO05D004012 4.4e-19 99.0 86 61.6
Lj1g0000615 Lotus japonicus HOM05D003540 ORTHO05D004012 4.4e-19 99.0 86 62.8
Atru.chr3.3368 Acer truncatum HOM05D003185 ORTHO05D007711 5.7e-19 98.6 80 67.5
Lalb_Chr10g0102641 Lupinus albus HOM05D003540 ORTHO05D004012 5.7e-19 98.6 85 63.5
arahy.Tifrunner.gnm1.ann1.41SNZJ Arachis hypogaea HOM05D003540 ORTHO05D004012 7.5e-19 98.2 83 62.7
arahy.Tifrunner.gnm1.ann1.NU78SD Arachis hypogaea HOM05D003540 ORTHO05D004012 7.5e-19 98.2 83 62.7
Lalb_Chr23g0270301 Lupinus albus HOM05D003540 ORTHO05D004012 7.5e-19 98.2 84 66.7
Ca_16024_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 9.8e-19 97.8 84 66.7
CDE05G3211 Ceratophyllum demersum HOM05D000364 ORTHO05D004012 1.3e-18 97.4 72 68.1
HPP92_023309 Vanilla planifolia HOM05D003540 ORTHO05D004012 1.3e-18 97.4 75 60.0
CDE05G3432 Ceratophyllum demersum HOM05D003540 ORTHO05D004012 1.7e-18 97.1 72 68.1
ClCG11G014400 Citrullus lanatus HOM05D003540 ORTHO05D004012 2.2e-18 96.7 100 58.0
Glyma.02G211500 Glycine max HOM05D003540 ORTHO05D004012 2.8e-18 96.3 86 59.3
Ca_05384_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 4.8e-18 95.5 81 63.0
MSTRG.11484 Avicennia marina HOM05D003540 ORTHO05D004012 6.3e-18 95.1 75 66.7
Medtr3g099773 Medicago truncatula HOM05D003540 ORTHO05D004012 1.4e-17 94.0 82 65.9
Medtr5g065550 Medicago truncatula HOM05D003540 ORTHO05D004012 1.4e-17 94.0 86 59.3
COL.COLO4_27316 Corchorus olitorius HOM05D003540 ORTHO05D004012 2.4e-17 93.2 69 65.2
CiPaw.01G047900 Carya illinoinensis HOM05D003540 ORTHO05D004012 3.1e-17 92.8 70 62.9
Migut.O00140 Erythranthe guttata HOM05D003540 ORTHO05D004012 4.1e-17 92.4 75 66.7
Gohir.A11G205600 Gossypium hirsutum HOM05D003540 ORTHO05D004012 4.1e-17 92.4 69 63.8
Gorai.007G236000 Gossypium raimondii HOM05D003540 ORTHO05D004012 4.1e-17 92.4 69 63.8
Lj1g0025059 Lotus japonicus HOM05D003540 ORTHO05D004012 4.1e-17 92.4 86 59.3
TPR.G6376 Trifolium pratense HOM05D003540 ORTHO05D004012 4.1e-17 92.4 84 63.1
ATR0736G080 Amborella trichopoda HOM05D003540 ORTHO05D004012 5.4e-17 92.0 81 60.5
Gohir.D11G218000 Gossypium hirsutum HOM05D003540 ORTHO05D004012 7.0e-17 91.7 69 63.8
Lsat_1_v5_gn_6_105381 Lactuca sativa HOM05D003540 ORTHO05D004012 7.0e-17 91.7 66 69.7
SalBow7G2649 Salvia bowleyana HOM05D003540 ORTHO05D004012 9.1e-17 91.3 75 64.0
Thecc.01G093400 Theobroma cacao HOM05D003540 ORTHO05D004012 9.1e-17 91.3 69 63.8
Psat2g066800 Pisum sativum HOM05D003540 ORTHO05D004012 1.2e-16 90.9 86 58.1
Phvul.009G034800 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 2.0e-16 90.1 86 57.0
vmacro21941 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 2.0e-16 90.1 86 58.1
SalBow6G0357 Salvia bowleyana HOM05D003540 ORTHO05D004012 2.7e-16 89.7 75 62.7
SGA_v2.0_scaffold5G02749 Striga asiatica HOM05D003540 ORTHO05D004012 3.5e-16 89.4 75 64.0
QL06p047634 Quercus lobata HOM05D003540 ORTHO05D004012 4.5e-16 89.0 67 61.2
Psat5g050000 Pisum sativum HOM05D003540 ORTHO05D004012 5.9e-16 88.6 84 59.5
CSS0021893 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 1.0e-15 87.8 71 60.6
MD15G1380400 Malus domestica HOM05D003540 ORTHO05D004012 1.0e-15 87.8 75 57.3
SGA_v2.0_scaffold37G14731 Striga asiatica HOM05D003540 ORTHO05D004012 1.0e-15 87.8 75 62.7
Cfa013710 Carpinus fangiana HOM05D003540 ORTHO05D004012 1.7e-15 87.0 76 64.5
Haze_22354 Corylus avellana HOM05D003540 ORTHO05D004012 1.7e-15 87.0 75 64.0
Hund16878 Selenicereus undatus HOM05D003540 ORTHO05D004012 3.8e-15 85.9 92 55.4
Os07g0577900 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 2.5e-14 83.2 63 61.9
Zm00001eb325480 Zea mays HOM05D003540 ORTHO05D004012 3.2e-14 82.8 71 59.2
SEGI_39968 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 5.5e-14 82.0 75 54.7
FAN13G2229 Fragaria x ananassa HOM05D003540 ORTHO05D004012 3.6e-13 79.3 54 68.5
Lalb_Chr23g0270201 Lupinus albus HOM05D003540 ORTHO05D004012 4.7e-13 79.0 64 67.2
Os03g0187700 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 4.7e-13 79.0 71 56.3
SEGI_15699 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 4.7e-13 79.0 72 52.8
Zm00001eb107620 Zea mays HOM05D003540 ORTHO05D004012 4.7e-13 79.0 71 56.3
FvH4_5g35960 Fragaria vesca HOM05D003540 ORTHO05D004012 1.8e-12 77.0 61 60.7
FAN18G2789 Fragaria x ananassa HOM05D003540 ORTHO05D004012 1.8e-12 77.0 61 60.7
PSO675G6040 Papaver somniferum HOM05D003540 ORTHO05D004012 1.8e-12 77.0 76 53.9
RcHm_v2.0_Chr7g0237701 Rosa chinensis HOM05D003540 ORTHO05D004012 1.8e-12 77.0 61 60.7
FAN08G1899 Fragaria x ananassa HOM05D003540 ORTHO05D004012 3.0e-12 76.3 54 66.7
Manes.02G214300 Manihot esculenta HOM05D003636 ORTHO05D005160 3.0e-12 76.3 64 64.1
AagrBONN_evm.TU.Sc2ySwM_228.2385 Anthoceros agrestis HOM05D003540 ORTHO05D004012 1.2e-11 74.3 70 50.0
TWI56G0839 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 9.8e-11 71.2 45 75.6
Cc04_g11820 Coffea canephora HOM05D003540 ORTHO05D004012 3.7e-10 69.3 90 47.8
MD08G1191600 Malus domestica HOM05D003540 ORTHO05D004012 4.9e-10 68.9 64 56.2
Oeu023447.1 Olea europaea HOM05D003540 ORTHO05D004012 6.3e-10 68.6 52 65.4
SMO141G0171 Selaginella moellendorffii HOM05D003540 ORTHO05D004012 4.1e-09 65.9 50 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2961 Anthoceros agrestis HOM05D003540 ORTHO05D004012 2.7e-08 63.2 81 44.4
Mapoly0006s0109 Marchantia polymorpha HOM05D003540 ORTHO05D004012 5.9e-08 62.0 66 45.5
Sabra17G0067100 Salix brachista HOM05D003540 ORTHO05D004012 1.0e-07 61.2 91 44.0
Haze_15046 Corylus avellana HOM05D003540 ORTHO05D004012 3.8e-07 59.3 42 66.7
Pp3c7_10130 Physcomitrium patens HOM05D003540 ORTHO05D004012 5.0e-07 58.9 51 52.9


User provided reference genes

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