Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 3.9e-287 990.7 482 100.0
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 8.7e-271 936.4 498 93.0
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 3.9e-255 884.4 499 88.2
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 1.0e-234 816.6 503 81.5
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 3.6e-176 622.1 500 66.8
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 1.0e-170 604.0 502 63.3
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 2.9e-165 585.9 503 62.6
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 3.8e-165 585.5 500 64.6
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 5.4e-164 581.6 503 62.6
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 6.0e-163 578.2 385 77.1
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 7.3e-161 571.2 504 61.3
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 2.4e-159 566.2 503 61.2
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 1.2e-158 563.9 504 62.5
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 5.8e-158 561.6 503 60.6
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 6.4e-157 558.1 503 59.6
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 9.3e-156 554.3 502 60.6
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 6.0e-155 551.6 503 60.0
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 6.0e-155 551.6 504 61.5
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 2.3e-154 549.7 504 58.7
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 6.2e-152 541.6 503 59.2
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 3.1e-151 539.3 503 60.2
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 1.6e-147 526.9 512 57.8
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 3.5e-147 525.8 501 58.1
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.3e-146 523.9 503 58.1
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 1.8e-146 523.5 502 57.6
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 6.7e-146 521.5 505 58.4
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 5.6e-145 518.5 524 57.3
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 9.6e-145 517.7 503 57.7
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 1.2e-142 510.8 507 57.0
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 5.8e-142 508.4 501 58.1
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.4e-140 503.8 490 59.0
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.3e-138 497.3 503 56.1
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 5.1e-138 495.4 487 57.9
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 2.5e-137 493.0 522 56.5
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 1.2e-134 484.2 492 54.9
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 1.5e-134 483.8 504 58.5
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 1.5e-134 483.8 461 57.9
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 4.5e-134 482.3 484 56.4
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 2.9e-133 479.6 491 58.0
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 4.6e-131 472.2 501 56.1
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 7.9e-131 471.5 490 56.7
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.9e-131 471.5 490 56.7
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 7.9e-131 471.5 490 56.7
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 1.3e-130 470.7 446 57.6
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.9e-130 469.2 490 56.5
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 1.9e-129 466.8 507 54.0
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 8.2e-128 461.5 512 52.1
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.1e-127 461.1 490 56.3
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 5.3e-127 458.8 467 57.6
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 5.3e-127 458.8 529 53.9
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 5.9e-126 455.3 498 54.4
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 2.9e-125 453.0 507 52.9
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 4.2e-124 449.1 608 46.7
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 7.9e-123 444.9 487 52.8
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 5.1e-122 442.2 499 52.3
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 2.2e-120 436.8 425 57.9
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 3.4e-118 429.5 487 51.5
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 5.9e-118 428.7 491 50.9
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 7.7e-118 428.3 541 49.9
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 1.6e-115 420.6 507 50.7
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 7.9e-115 418.3 495 51.5
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.4e-114 417.5 377 60.5
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 1.8e-114 417.2 461 53.6
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 3.9e-114 416.0 376 60.4
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 1.1e-113 414.5 397 60.5
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 2.2e-112 410.2 514 50.0
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 1.1e-111 407.9 476 52.5
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 1.2e-110 404.4 418 56.5
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 1.5e-110 404.1 501 48.7
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 2.6e-110 403.3 495 49.1
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 3.5e-110 402.9 501 49.5
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 1.0e-109 401.4 510 48.8
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 1.0e-109 401.4 502 49.0
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 1.0e-109 401.4 498 48.6
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 1.3e-109 401.0 505 49.7
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 7.2e-108 395.2 486 49.0
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 1.2e-107 394.4 385 60.0
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 2.7e-107 393.3 385 59.7
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 3.9e-106 389.4 377 57.8
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 1.5e-105 387.5 527 46.1
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 3.3e-105 386.3 497 47.9
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 5.7e-105 385.6 503 49.5
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 1.7e-104 384.0 505 48.9
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 5.0e-101 372.5 385 55.3
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 1.5e-100 370.9 501 46.9
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 1.9e-100 370.5 502 47.2
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 8.3e-96 355.1 390 54.1
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 1.4e-95 354.4 425 52.7
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 2.2e-93 347.1 367 55.3
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 3.8e-93 346.3 486 46.1
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 3.2e-92 343.2 384 53.4
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 3.2e-92 343.2 407 51.8
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 2.3e-90 337.0 484 45.2
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 2.0e-89 334.0 522 42.5
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 1.1e-87 328.2 362 52.8
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 1.4e-87 327.8 362 53.0
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 2.4e-87 327.0 463 46.7
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 7.0e-87 325.5 464 45.7
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 3.5e-86 323.2 389 51.2
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 7.2e-84 315.5 364 51.1
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 1.6e-83 314.3 363 51.0
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 1.2e-81 308.1 501 41.7
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 2.0e-81 307.4 362 50.3
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 1.7e-80 304.3 378 50.0
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 2.2e-80 303.9 369 50.7
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 2.2e-80 303.9 446 45.5
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 4.9e-80 302.8 378 49.2
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 2.4e-79 300.4 378 48.9
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 4.1e-79 299.7 368 50.5
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 4.5e-78 296.2 365 49.6
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 1.0e-77 295.0 326 54.9
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 9.5e-76 288.5 439 43.1
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 3.6e-75 286.6 387 48.3
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 1.0e-74 285.0 384 48.2
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 3.4e-73 280.0 455 42.0
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 4.1e-71 273.1 493 41.0
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 5.0e-69 266.2 417 44.1
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 4.7e-67 259.6 474 38.4
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 3.7e-64 250.0 344 43.9
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 1.9e-60 237.7 471 39.3
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 6.2e-59 232.6 289 48.4
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 8.3e-56 222.2 383 40.7
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 5.4e-55 219.5 264 48.9
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 7.8e-54 215.7 197 55.3
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 3.2e-47 193.7 243 48.6
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 2.4e-39 167.5 108 75.0
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 1.2e-38 165.2 416 36.3
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 4.0e-34 150.2 370 34.9
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 2.6e-33 147.5 164 48.8
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 1.7e-32 144.8 247 37.7
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 4.9e-32 143.3 199 39.7
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.6e-30 138.3 84 79.8
Sopen01g013720 Solanum pennellii HOM05D005357 ORTHO05D006354 2.3e-29 134.4 112 66.1
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 3.9e-29 133.7 292 33.9
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 1.5e-28 131.7 93 67.7
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 2.5e-28 131.0 147 42.9
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 4.9e-24 116.7 106 48.1
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 7.1e-23 112.8 253 34.4
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 4.1e-18 97.1 68 73.5
Sopen01g013770 Solanum pennellii HOM05D005357 ORTHO05D006354 7.2e-15 86.3 258 30.6
Oeu020881.1 Olea europaea HOM05D005357 ORTHO05D006354 7.4e-12 76.3 81 53.1
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 3.6e-06 57.4 52 63.5


User provided reference genes

Program Settings