Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000007g0020 Nicotiana tabacum HOM05D002383 ORTHO05D002515 2.6e-46 188.3 94 100.0
Nitab4.5_0012264g0010 Nicotiana tabacum HOM05D002383 ORTHO05D002515 1.2e-35 152.9 93 88.2
Peaxi162Scf00128g00012 Petunia axillaris HOM05D002383 ORTHO05D002515 5.9e-14 80.9 87 60.9
CSS0034273 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 2.2e-13 79.0 85 54.1
Thecc.04G017100 Theobroma cacao HOM05D002383 ORTHO05D002515 6.5e-13 77.4 85 54.1
MSTRG.7920 Avicennia marina HOM05D002383 ORTHO05D002515 8.5e-13 77.0 74 58.1
COL.COLO4_29113 Corchorus olitorius HOM05D002383 ORTHO05D002515 8.5e-13 77.0 82 56.1
PGR142G2811 Punica granatum HOM05D002383 ORTHO05D002515 2.5e-12 75.5 85 54.1
Thecc.02G258100 Theobroma cacao HOM05D002383 ORTHO05D002515 3.2e-12 75.1 84 53.6
CSS0031549 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 4.2e-12 74.7 85 50.6
Glyma.01G026600 Glycine max HOM05D002383 ORTHO05D002515 4.2e-12 74.7 85 52.9
MD13G1102700 Malus domestica HOM05D002383 ORTHO05D002515 4.2e-12 74.7 88 51.1
Duzib264G1049 Durio zibethinus HOM05D002383 ORTHO05D002515 7.2e-12 73.9 82 54.9
Rhsim12G0112000 Rhododendron simsii HOM05D002383 ORTHO05D002515 9.4e-12 73.6 78 51.3
TPR.G34660 Trifolium pratense HOM05D002383 ORTHO05D002515 1.6e-11 72.8 84 45.2
Manes.12G024000 Manihot esculenta HOM05D002383 ORTHO05D002515 2.1e-11 72.4 85 51.8
CiPaw.06G068500 Carya illinoinensis HOM05D002383 ORTHO05D002515 2.7e-11 72.0 84 50.0
Hma1.2p1_0223F.1_g094100 Hydrangea macrophylla HOM05D002383 ORTHO05D002515 2.7e-11 72.0 81 53.1
Haze_12239 Corylus avellana HOM05D002383 ORTHO05D002515 3.6e-11 71.6 85 52.9
Glyma.02G038200 Glycine max HOM05D002383 ORTHO05D002515 3.6e-11 71.6 85 52.9
Lj4g0012935 Lotus japonicus HOM05D002383 ORTHO05D002515 3.6e-11 71.6 66 56.1
Manes.15G150600 Manihot esculenta HOM05D002383 ORTHO05D002515 3.6e-11 71.6 85 50.6
Potri.008G187300 Populus trichocarpa HOM05D002383 ORTHO05D002515 3.6e-11 71.6 88 46.6
Gohir.D02G159400 Gossypium hirsutum HOM05D002383 ORTHO05D002515 4.6e-11 71.2 86 50.0
Ciclev10017241m.g Citrus clementina HOM05D002383 ORTHO05D002515 6.1e-11 70.9 89 49.4
Duzib187G0948 Durio zibethinus HOM05D002383 ORTHO05D002515 6.1e-11 70.9 85 51.8
Gorai.005G179500 Gossypium raimondii HOM05D002383 ORTHO05D002515 6.1e-11 70.9 86 50.0
Potri.010G045200 Populus trichocarpa HOM05D002383 ORTHO05D002515 6.1e-11 70.9 88 48.9
TAR371G1055 Trochodendron aralioides HOM05D002383 ORTHO05D002515 6.1e-11 70.9 84 51.2
Gohir.A03G136100 Gossypium hirsutum HOM05D002383 ORTHO05D002515 7.9e-11 70.5 86 50.0
Lalb_Chr09g0334821 Lupinus albus HOM05D002383 ORTHO05D002515 1.0e-10 70.1 73 49.3
Sabra17G0061800 Salix brachista HOM05D002383 ORTHO05D002515 1.4e-10 69.7 85 49.4
TWI56G1026 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 1.4e-10 69.7 87 48.3
TAR629G2295 Trochodendron aralioides HOM05D002383 ORTHO05D002515 1.4e-10 69.7 85 50.6
MSTRG.570 Avicennia marina HOM05D002383 ORTHO05D002515 1.8e-10 69.3 77 58.4
Glyma.18G143300 Glycine max HOM05D002383 ORTHO05D002515 1.8e-10 69.3 87 47.1
Hma1.2p1_0160F.1_g071240 Hydrangea macrophylla HOM05D002383 ORTHO05D002515 1.8e-10 69.3 67 56.7
Manes.13G025600 Manihot esculenta HOM05D002383 ORTHO05D002515 1.8e-10 69.3 84 47.6
Potri.017G070000 Populus trichocarpa HOM05D002383 ORTHO05D002515 1.8e-10 69.3 85 50.6
Prupe.1G243100 Prunus persica HOM05D002383 ORTHO05D002515 1.8e-10 69.3 87 48.3
Cfa009202 Carpinus fangiana HOM05D002383 ORTHO05D002515 2.3e-10 68.9 86 53.5
FAN02G4557 Fragaria x ananassa HOM05D002383 ORTHO05D002515 2.3e-10 68.9 87 48.3
RcHm_v2.0_Chr2g0172811 Rosa chinensis HOM05D002383 ORTHO05D002515 2.3e-10 68.9 87 50.6
Ca_04169_v3 Cicer arietinum L. HOM05D002383 ORTHO05D002515 3.0e-10 68.6 85 52.9
Lalb_Chr05g0216591 Lupinus albus HOM05D002383 ORTHO05D002515 3.0e-10 68.6 85 49.4
Psat1g054720 Pisum sativum HOM05D002383 ORTHO05D002515 3.0e-10 68.6 84 52.4
VMungo0251G0034 Vigna mungo HOM05D002383 ORTHO05D002515 3.0e-10 68.6 84 45.2
Duzib248G0824 Durio zibethinus HOM05D002383 ORTHO05D002515 3.9e-10 68.2 86 47.7
Migut.H00078 Erythranthe guttata HOM05D002383 ORTHO05D002515 3.9e-10 68.2 82 50.0
FAN05G3597 Fragaria x ananassa HOM05D002383 ORTHO05D002515 3.9e-10 68.2 87 48.3
Phvul.003G064100 Phaseolus vulgaris HOM05D002383 ORTHO05D002515 3.9e-10 68.2 84 44.0
Aqoxy5G03793 Aquilegia oxysepala HOM05D002383 ORTHO05D002515 5.1e-10 67.8 72 48.6
Duzib268G1316 Durio zibethinus HOM05D002383 ORTHO05D002515 5.1e-10 67.8 85 50.6
Migut.K01394 Erythranthe guttata HOM05D002383 ORTHO05D002515 5.1e-10 67.8 91 49.5
FvH4_6g51230 Fragaria vesca HOM05D002383 ORTHO05D002515 5.1e-10 67.8 87 48.3
FAN14G3744 Fragaria x ananassa HOM05D002383 ORTHO05D002515 5.1e-10 67.8 87 48.3
MD17G1027200 Malus domestica HOM05D002383 ORTHO05D002515 5.1e-10 67.8 86 47.7
Manes.17G112300 Manihot esculenta HOM05D002383 ORTHO05D002515 6.7e-10 67.4 86 46.5
Nn3g16740 Nelumbo nucifera HOM05D002383 ORTHO05D002515 6.7e-10 67.4 85 51.8
Nn4g22639 Nelumbo nucifera HOM05D002383 ORTHO05D002515 6.7e-10 67.4 85 50.6
Nitab4.5_0008365g0010 Nicotiana tabacum HOM05D002383 ORTHO05D002515 6.7e-10 67.4 89 44.9
SalBow7G3295 Salvia bowleyana HOM05D002383 ORTHO05D002515 6.7e-10 67.4 86 48.8
Medtr6g005250 Medicago truncatula HOM05D002383 ORTHO05D002515 8.8e-10 67.0 85 51.8
COL.COLO4_24249 Corchorus olitorius HOM05D002383 ORTHO05D002515 1.1e-09 66.6 91 46.2
MBI16_g23839_MAGBIO Magnolia biondii HOM05D002383 ORTHO05D002515 1.1e-09 66.6 89 51.7
Sp7g01460 Schrenkiella parvula HOM05D002383 ORTHO05D002515 1.1e-09 66.6 83 50.6
CANSAT01G0072 Cannabis sativa HOM05D002383 ORTHO05D002515 1.5e-09 66.2 102 45.1
Lalb_Chr02g0160501 Lupinus albus HOM05D002383 ORTHO05D002515 1.5e-09 66.2 82 48.8
Sabra08G0141800 Salix brachista HOM05D002383 ORTHO05D002515 1.5e-09 66.2 89 43.8
SGA_v2.0_scaffold18G08279 Striga asiatica HOM05D002383 ORTHO05D002515 1.5e-09 66.2 89 47.2
Atru.chr11.2114 Acer truncatum HOM05D002383 ORTHO05D002515 2.0e-09 65.9 92 46.7
Atru.chr11.2129 Acer truncatum HOM05D002383 ORTHO05D002515 2.0e-09 65.9 92 46.7
BcaB06g27511 Brassica carinata HOM05D002383 ORTHO05D002515 2.0e-09 65.9 83 48.2
Eucgr.I01742 Eucalyptus grandis HOM05D002383 ORTHO05D002515 2.0e-09 65.9 90 46.7
MD09G1027300 Malus domestica HOM05D002383 ORTHO05D002515 2.0e-09 65.9 86 46.5
Prupe.3G291500 Prunus persica HOM05D002383 ORTHO05D002515 2.0e-09 65.9 85 47.1
PGSC0003DMG400018626 Solanum tuberosum HOM05D059959 ORTHO05D051309 2.0e-09 65.9 66 59.1
TAR374G1253 Trochodendron aralioides HOM05D002383 ORTHO05D002515 2.0e-09 65.9 86 48.8
C04p47260 Brassica napus HOM05D002383 ORTHO05D002515 2.5e-09 65.5 83 47.0
BolC4t26325H Brassica oleracea HOM05D002383 ORTHO05D002515 2.5e-09 65.5 83 47.0
BraA04t17007Z Brassica rapa HOM05D002383 ORTHO05D002515 3.3e-09 65.1 83 47.0
Migut.E00196 Erythranthe guttata HOM05D002383 ORTHO05D002515 3.3e-09 65.1 87 51.7
CSS0011711 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 4.3e-09 64.7 86 51.2
DCAR_007058 Daucus carota HOM05D002383 ORTHO05D002515 4.3e-09 64.7 67 59.7
Eucgr.B03299 Eucalyptus grandis HOM05D002383 ORTHO05D002515 4.3e-09 64.7 89 46.1
Lj2g0006785 Lotus japonicus HOM05D002383 ORTHO05D002515 4.3e-09 64.7 87 51.7
Rhsim10G0017000 Rhododendron simsii HOM05D002383 ORTHO05D002515 4.3e-09 64.7 84 51.2
MSTRG.3147 Avicennia marina HOM05D002383 ORTHO05D002515 5.7e-09 64.3 85 50.6
Gohir.D12G149200 Gossypium hirsutum HOM05D002383 ORTHO05D002515 5.7e-09 64.3 84 41.7
Gorai.008G160700 Gossypium raimondii HOM05D002383 ORTHO05D002515 5.7e-09 64.3 84 41.7
Hma1.2p1_2120F.1_g314410 Hydrangea macrophylla HOM05D002383 ORTHO05D002515 5.7e-09 64.3 87 47.1
Nitab4.5_0002468g0100 Nicotiana tabacum HOM05D002383 ORTHO05D002515 5.7e-09 64.3 95 47.4
Sed0020664 Sechium edule HOM05D002383 ORTHO05D002515 5.7e-09 64.3 86 45.3
THA.LOC104809580 Tarenaya hassleriana HOM05D002383 ORTHO05D002515 5.7e-09 64.3 83 48.2
TAR622G1076 Trochodendron aralioides HOM05D002383 ORTHO05D002515 5.7e-09 64.3 85 50.6
MSTRG.24037 Avicennia marina HOM05D002383 ORTHO05D002515 7.4e-09 63.9 86 48.8
CAN.G1057.2 Capsicum annuum HOM05D002383 ORTHO05D002515 7.4e-09 63.9 86 46.5
CiPaw.05G183200 Carya illinoinensis HOM05D002383 ORTHO05D002515 7.4e-09 63.9 84 50.0
Cc11_g15590 Coffea canephora HOM05D002383 ORTHO05D002515 7.4e-09 63.9 85 47.1
Thhalv10009472m.g Eutrema salsugineum HOM05D002383 ORTHO05D002515 7.4e-09 63.9 89 47.2
Nitab4.5_0005022g0010 Nicotiana tabacum HOM05D002383 ORTHO05D002515 7.4e-09 63.9 87 44.8
CSS0002762 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 9.7e-09 63.5 86 47.7
Medtr8g069510 Medicago truncatula HOM05D002383 ORTHO05D002515 9.7e-09 63.5 87 47.1
Psat4g115800 Pisum sativum HOM05D002383 ORTHO05D002515 9.7e-09 63.5 93 44.1
Sed0014920 Sechium edule HOM05D002383 ORTHO05D002515 9.7e-09 63.5 86 45.3
TWI12G0144 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 9.7e-09 63.5 87 48.3
Aa31LG9G1160 Aethionema arabicum HOM05D002383 ORTHO05D002515 1.3e-08 63.2 85 45.9
CARHR261560 Cardamine hirsuta HOM05D002383 ORTHO05D002515 1.3e-08 63.2 88 46.6
Glyma.08G282900 Glycine max HOM05D002383 ORTHO05D002515 1.3e-08 63.2 95 43.2
Gohir.A12G144600 Gossypium hirsutum HOM05D002383 ORTHO05D002515 1.3e-08 63.2 84 41.7
PGSC0003DMG400006915 Solanum tuberosum HOM05D002383 ORTHO05D002515 1.3e-08 63.2 86 45.3
TWI36G1091 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 1.3e-08 63.2 83 48.2
A04p13490 Brassica napus HOM05D002383 ORTHO05D002515 1.7e-08 62.8 83 45.8
Lsat_1_v5_gn_4_183900 Lactuca sativa HOM05D002383 ORTHO05D002515 1.7e-08 62.8 86 48.8
MD16G1102900 Malus domestica HOM05D002383 ORTHO05D002515 1.7e-08 62.8 78 48.7
SalBow8G3288 Salvia bowleyana HOM05D002383 ORTHO05D002515 1.7e-08 62.8 84 51.2
Sopen02g031160 Solanum pennellii HOM05D002383 ORTHO05D002515 1.7e-08 62.8 87 50.6
PGSC0003DMG400012600 Solanum tuberosum HOM05D002383 ORTHO05D002515 1.7e-08 62.8 87 47.1
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 1.7e-08 62.8 79 44.3
Duzib251G0524 Durio zibethinus HOM05D002383 ORTHO05D002515 2.2e-08 62.4 88 45.5
QL03p058475 Quercus lobata HOM05D002383 ORTHO05D002515 2.2e-08 62.4 84 45.2
Actinidia05994 Actinidia chinensis HOM05D002383 ORTHO05D002515 2.8e-08 62.0 81 44.4
Sabra10G0023100 Salix brachista HOM05D001342 ORTHO05D001286 2.8e-08 62.0 96 43.8
SalBow1G3310 Salvia bowleyana HOM05D002383 ORTHO05D002515 2.8e-08 62.0 86 47.7
Sp2g03960 Schrenkiella parvula HOM05D002383 ORTHO05D002515 2.8e-08 62.0 86 44.2
TPR.G14081 Trifolium pratense HOM05D002383 ORTHO05D002515 2.8e-08 62.0 87 48.3
VMungo1215G0977 Vigna mungo HOM05D002383 ORTHO05D002515 2.8e-08 62.0 94 42.6
AT1G10690 Arabidopsis thaliana HOM05D002383 ORTHO05D002515 3.7e-08 61.6 85 47.1
Gohir.A09G029100 Gossypium hirsutum HOM05D002383 ORTHO05D002515 3.7e-08 61.6 80 45.0
Gohir.D09G028600 Gossypium hirsutum HOM05D002383 ORTHO05D002515 3.7e-08 61.6 80 45.0
Gorai.006G033300 Gossypium raimondii HOM05D002383 ORTHO05D002515 3.7e-08 61.6 80 45.0
HanXRQChr15g0475321 Helianthus annuus HOM05D002383 ORTHO05D002515 3.7e-08 61.6 82 43.9
Lalb_Chr09g0326151 Lupinus albus HOM05D002383 ORTHO05D002515 3.7e-08 61.6 86 46.5
Phvul.002G150700 Phaseolus vulgaris HOM05D002383 ORTHO05D002515 3.7e-08 61.6 88 43.2
Rhsim08G0050700 Rhododendron simsii HOM05D002383 ORTHO05D002515 4.8e-08 61.2 86 44.2
AL1G21560 Arabidopsis lyrata HOM05D002383 ORTHO05D002515 6.3e-08 60.8 85 45.9
Solyc02g086450.1 Solanum lycopersicum HOM05D002383 ORTHO05D002515 6.3e-08 60.8 87 49.4
AT5G40460 Arabidopsis thaliana HOM05D002383 ORTHO05D002515 8.2e-08 60.5 89 46.1
Thhalv10028250m.g Eutrema salsugineum HOM05D002383 ORTHO05D002515 8.2e-08 60.5 86 43.0
Sc03g0007450 Simmondsia chinensis HOM05D002383 ORTHO05D002515 1.1e-07 60.1 81 40.7
CANSAT64G1350 Cannabis sativa HOM05D002383 ORTHO05D002515 1.4e-07 59.7 99 44.4
DCAR_021721 Daucus carota HOM05D002383 ORTHO05D002515 1.4e-07 59.7 86 45.3
Nitab4.5_0003318g0140 Nicotiana tabacum HOM05D002383 ORTHO05D002515 1.4e-07 59.7 82 48.8
Nitab4.5_0003318g0160 Nicotiana tabacum HOM05D002383 ORTHO05D002515 1.4e-07 59.7 85 47.1
RcHm_v2.0_Chr4g0432781 Rosa chinensis HOM05D002383 ORTHO05D002515 1.4e-07 59.7 77 45.5
THA.LOC104825323 Tarenaya hassleriana HOM05D002383 ORTHO05D002515 1.4e-07 59.7 82 42.7
VMungo0464G1703 Vigna mungo HOM05D002383 ORTHO05D002515 1.4e-07 59.7 62 54.8
Cpa.g.sc33.8 Carica papaya HOM05D002383 ORTHO05D002515 1.8e-07 59.3 85 50.6
MELO3C021579.2 Cucumis melo HOM05D002383 ORTHO05D002515 1.8e-07 59.3 86 47.7
SGA_v2.0_scaffold224G42989 Striga asiatica HOM05D002383 ORTHO05D002515 1.8e-07 59.3 85 48.2
Atru.chr6.2391 Acer truncatum HOM05D002383 ORTHO05D002515 3.1e-07 58.5 85 44.7
BcaC05g24959 Brassica carinata HOM05D002383 ORTHO05D002515 3.1e-07 58.5 86 44.2
Lsat_1_v5_gn_0_39801 Lactuca sativa HOM05D002383 ORTHO05D002515 3.1e-07 58.5 86 43.0
Solyc02g067810.1 Solanum lycopersicum HOM05D002383 ORTHO05D002515 3.1e-07 58.5 86 44.2
CARHR010870 Cardamine hirsuta HOM05D002383 ORTHO05D002515 4.1e-07 58.2 87 46.0
TWI18G1125 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 4.1e-07 58.2 84 45.2
Aqoxy3G01198 Aquilegia oxysepala HOM05D002383 ORTHO05D002515 5.3e-07 57.8 84 42.9
AL2G15780 Arabidopsis lyrata HOM05D002383 ORTHO05D002515 5.3e-07 57.8 86 46.5
FAN22G0427 Fragaria x ananassa HOM05D002383 ORTHO05D002515 6.9e-07 57.4 71 46.5
Lsat_1_v5_gn_2_91461 Lactuca sativa HOM05D002383 ORTHO05D002515 6.9e-07 57.4 87 46.0
Oeu018138.1 Olea europaea HOM05D002383 ORTHO05D002515 6.9e-07 57.4 68 45.6
Oeu036541.1 Olea europaea HOM05D002383 ORTHO05D002515 6.9e-07 57.4 86 45.3
Phvul.004G010700 Phaseolus vulgaris HOM05D002383 ORTHO05D002515 6.9e-07 57.4 62 53.2
Sopen02g016920 Solanum pennellii HOM05D002383 ORTHO05D002515 6.9e-07 57.4 70 47.1
FAN17G0502 Fragaria x ananassa HOM05D002383 ORTHO05D002515 9.1e-07 57.0 71 45.1
PGR083G1142 Punica granatum HOM05D002383 ORTHO05D002515 9.1e-07 57.0 89 43.8
Cpa.g.sc130.83 Carica papaya HOM05D002383 ORTHO05D002515 1.2e-06 56.6 82 46.3
ClCG09G019250 Citrullus lanatus HOM05D002383 ORTHO05D002515 1.2e-06 56.6 86 46.5
PSO782G0538 Papaver somniferum HOM05D002383 ORTHO05D002515 1.5e-06 56.2 72 47.2
CsaV3_5G027140 Cucumis sativus L. HOM05D002383 ORTHO05D002515 2.0e-06 55.8 86 45.3
FvH4_4g25460 Fragaria vesca HOM05D002383 ORTHO05D002515 2.0e-06 55.8 71 45.1
FAN07G2594 Fragaria x ananassa HOM05D002383 ORTHO05D002515 2.0e-06 55.8 72 47.2
FAN12G0172 Fragaria x ananassa HOM05D002383 ORTHO05D002515 2.0e-06 55.8 71 45.1
Aa31LG2G9800 Aethionema arabicum HOM05D002383 ORTHO05D002515 2.6e-06 55.5 87 43.7
CAN.G473.10 Capsicum annuum HOM05D002383 ORTHO05D002515 2.6e-06 55.5 87 43.7
TWI75G1208 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 2.6e-06 55.5 67 53.7
Lsat_1_v5_gn_4_4281 Lactuca sativa HOM05D002383 ORTHO05D002515 3.4e-06 55.1 68 47.1
BolC5t29651H Brassica oleracea HOM05D002383 ORTHO05D002515 4.5e-06 54.7 86 41.9
PSO478G4643 Papaver somniferum HOM05D002383 ORTHO05D002515 4.5e-06 54.7 72 47.2
SGA_v2.0_scaffold135G34905 Striga asiatica HOM05D002383 ORTHO05D002515 4.5e-06 54.7 86 41.9
ECA234G0249 Erigeron canadensis HOM05D002383 ORTHO05D002515 5.9e-06 54.3 83 43.4
MBI10_g00742_MAGBIO Magnolia biondii HOM05D002383 ORTHO05D000022 5.9e-06 54.3 82 43.9
Peaxi162Scf00080g00104 Petunia axillaris HOM05D002383 ORTHO05D002515 5.9e-06 54.3 86 45.3
Lalb_Chr05g0228391 Lupinus albus HOM05D002383 ORTHO05D002515 7.7e-06 53.9 83 38.6
PSO675G5790 Papaver somniferum HOM05D002383 ORTHO05D002515 7.7e-06 53.9 75 46.7
TPR.G38826 Trifolium pratense HOM05D002383 ORTHO05D002515 7.7e-06 53.9 75 49.3


User provided reference genes

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