Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000006g0660 Nicotiana tabacum HOM05D005849 ORTHO05D004704 8.2e-132 473.8 247 100.0
Solyc07g045450.1 Solanum lycopersicum HOM05D005849 ORTHO05D004704 4.0e-38 162.5 335 38.8
Sopen07g023990 Solanum pennellii HOM05D005849 ORTHO05D004704 1.7e-36 157.1 365 36.4
Dinv26604 Davidia involucrata HOM05D005849 ORTHO05D004704 2.2e-36 156.8 249 47.0
Peaxi162Scf00802g00130 Petunia axillaris HOM05D005849 ORTHO05D004704 2.1e-34 150.2 247 43.3
QL04p068477 Quercus lobata HOM05D005849 ORTHO05D004704 6.6e-33 145.2 248 41.1
Lj8P136T22 Lonicera japonica HOM05D005849 ORTHO05D004704 6.2e-31 138.7 255 44.3
CiPaw.04G197000 Carya illinoinensis HOM05D005849 ORTHO05D004704 1.8e-30 137.1 251 41.4
Prupe.3G197400 Prunus persica HOM05D005849 ORTHO05D004704 5.3e-30 135.6 257 37.7
COL.COLO4_19617 Corchorus olitorius HOM05D005849 ORTHO05D004704 2.9e-28 129.8 264 37.9
Duzib133G0645 Durio zibethinus HOM05D005849 ORTHO05D004704 4.9e-28 129.0 253 40.7
Thecc.01G196200 Theobroma cacao HOM05D005849 ORTHO05D004704 3.2e-27 126.3 250 39.2
Potri.014G167700 Populus trichocarpa HOM05D005849 ORTHO05D004704 9.3e-27 124.8 238 38.2
FAN09G2506 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.2e-26 124.4 248 37.9
Cc03_g07410 Coffea canephora HOM05D005849 ORTHO05D004704 1.6e-26 124.0 299 36.5
Nitab4.5_0001701g0180 Nicotiana tabacum HOM05D005849 ORTHO05D004704 1.6e-26 124.0 174 48.9
Nitab4.5_0004125g0020 Nicotiana tabacum HOM05D005849 ORTHO05D004704 2.7e-26 123.2 174 50.0
FAN05G2424 Fragaria x ananassa HOM05D005849 ORTHO05D004704 6.0e-26 122.1 247 37.2
Duzib138G1177 Durio zibethinus HOM05D005849 ORTHO05D004704 3.9e-25 119.4 250 38.0
TAR629G2787 Trochodendron aralioides HOM05D005849 ORTHO05D004704 3.9e-25 119.4 161 46.6
FvH4_6g40610 Fragaria vesca HOM05D005849 ORTHO05D004704 5.1e-25 119.0 247 36.4
FAN02G2959 Fragaria x ananassa HOM05D005849 ORTHO05D004704 5.1e-25 119.0 247 36.8
FAN14G3262 Fragaria x ananassa HOM05D005849 ORTHO05D004704 5.1e-25 119.0 247 36.4
RcHm_v2.0_Chr2g0155981 Rosa chinensis HOM05D005849 ORTHO05D004704 5.1e-25 119.0 247 35.6
CiPaw.03G281900 Carya illinoinensis HOM05D005849 ORTHO05D004704 1.5e-24 117.5 255 35.7
Haze_12628 Corylus avellana HOM05D005849 ORTHO05D004704 1.5e-24 117.5 242 40.9
Sabra14G0127500 Salix brachista HOM05D005849 ORTHO05D004704 3.3e-24 116.3 239 37.7
TAR629G2911 Trochodendron aralioides HOM05D005849 ORTHO05D004704 3.3e-24 116.3 249 36.9
MD09G1126800 Malus domestica HOM05D005849 ORTHO05D004704 5.6e-24 115.5 233 35.6
Cfa014225 Carpinus fangiana HOM05D005849 ORTHO05D004704 1.3e-23 114.4 242 39.7
Dinv21298 Davidia involucrata HOM05D005849 ORTHO05D004704 2.8e-23 113.2 241 36.9
Manes.13G061900 Manihot esculenta HOM05D005849 ORTHO05D004704 6.2e-23 112.1 258 34.5
Gohir.A07G169800 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.4e-22 110.9 243 37.9
Gorai.001G191400 Gossypium raimondii HOM05D005849 ORTHO05D004704 1.4e-22 110.9 242 38.4
Gorai.001G222200 Gossypium raimondii HOM05D005849 ORTHO05D004704 1.4e-22 110.9 249 35.7
Gohir.D07G198400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 4.0e-22 109.4 249 35.3
Gohir.A07G192100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 5.3e-22 109.0 247 35.6
Gohir.D07G171100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.2e-21 107.8 243 38.3
PGR083G2364 Punica granatum HOM05D005849 ORTHO05D004704 2.6e-21 106.7 237 36.7
Aqoxy4G02338 Aquilegia oxysepala HOM05D005849 ORTHO05D004704 4.5e-21 105.9 239 38.1
Nn1g03187 Nelumbo nucifera HOM05D005849 ORTHO05D004704 1.0e-20 104.8 235 34.9
Rhsim06G0176600 Rhododendron simsii HOM05D005849 ORTHO05D004704 4.9e-20 102.4 240 37.1
MSTRG.12249 Avicennia marina HOM05D005849 ORTHO05D004704 6.5e-20 102.1 247 37.2
MD17G1117100 Malus domestica HOM05D005849 ORTHO05D004704 6.5e-20 102.1 123 45.5
TWI36G1699 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 1.4e-19 100.9 258 36.0
TWI18G0644 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 3.2e-19 99.8 258 32.2
Actinidia18832 Actinidia chinensis HOM05D005849 ORTHO05D004704 1.2e-18 97.8 122 51.6
AUR62015005 Chenopodium quinoa HOM05D005849 ORTHO05D004704 1.6e-18 97.4 256 34.8
MELO3C025957.2 Cucumis melo HOM05D005849 ORTHO05D004704 4.6e-18 95.9 128 48.4
MBI19_g14891_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 7.9e-18 95.1 217 36.4
Cpa.g.sc136.30 Carica papaya HOM05D005849 ORTHO05D004704 1.3e-17 94.4 245 36.3
CsaV3_6G009640 Cucumis sativus L. HOM05D005849 ORTHO05D004704 1.8e-17 94.0 127 47.2
PSO541G2883 Papaver somniferum HOM05D005849 ORTHO05D004704 1.8e-17 94.0 266 33.1
Actinidia07866 Actinidia chinensis HOM05D005849 ORTHO05D004704 2.3e-17 93.6 119 49.6
PSO675G3647 Papaver somniferum HOM05D005849 ORTHO05D004704 2.3e-17 93.6 251 32.3
Ciclev10018021m.g Citrus clementina HOM05D005849 ORTHO05D004704 3.0e-17 93.2 242 35.1
Glyma.13G006500 Glycine max HOM05D005849 ORTHO05D004704 3.3e-16 89.7 245 34.7
Manes.12G064702 Manihot esculenta HOM05D005849 ORTHO05D004704 5.7e-16 89.0 250 31.2
Oeu064351.1 Olea europaea HOM05D005849 ORTHO05D004704 7.4e-16 88.6 132 45.5
AUR62029117 Chenopodium quinoa HOM05D005849 ORTHO05D004704 1.3e-15 87.8 155 41.9
Nn1g07503 Nelumbo nucifera HOM05D005849 ORTHO05D004704 1.3e-15 87.8 146 40.4
EL10Ac9g22679 Beta vulgaris HOM05D005849 ORTHO05D004704 6.3e-15 85.5 271 32.5
Medtr5g098480 Medicago truncatula HOM05D005849 ORTHO05D004704 6.3e-15 85.5 124 42.7
Sc20g0004000 Simmondsia chinensis HOM05D005849 ORTHO05D004704 1.1e-14 84.7 257 33.1
Ciclev10009298m.g Citrus clementina HOM05D005849 ORTHO05D004704 1.8e-14 84.0 241 29.9
Duzib213G0789 Durio zibethinus HOM05D005849 ORTHO05D004704 1.8e-14 84.0 251 33.5
Lsat_1_v5_gn_9_103781 Lactuca sativa HOM05D005849 ORTHO05D004704 1.8e-14 84.0 124 46.0
MBI16_g22138_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 3.1e-14 83.2 235 34.9
CiPaw.11G203200 Carya illinoinensis HOM05D005849 ORTHO05D004704 4.1e-14 82.8 247 34.8
Glyma.20G062100 Glycine max HOM05D005849 ORTHO05D004704 4.1e-14 82.8 110 44.5
Actinidia35203 Actinidia chinensis HOM05D005849 ORTHO05D004704 1.2e-13 81.3 242 33.5
Sed0012118 Sechium edule HOM05D005849 ORTHO05D004704 4.5e-13 79.3 240 31.7
PGSC0003DMG400017375 Solanum tuberosum HOM05D005849 ORTHO05D004704 5.9e-13 79.0 96 50.0
DCAR_019680 Daucus carota HOM05D005849 ORTHO05D004704 7.6e-13 78.6 144 38.9
Lj1P796T11 Lonicera japonica HOM05D005849 ORTHO05D004704 7.6e-13 78.6 130 43.8
Sed0027972 Sechium edule HOM05D005849 ORTHO05D004704 7.6e-13 78.6 228 32.5
Prupe.4G242400 Prunus persica HOM05D005849 ORTHO05D004704 3.8e-12 76.3 118 45.8
Thecc.07G014700 Theobroma cacao HOM05D005849 ORTHO05D004704 5.0e-12 75.9 250 32.0
DCAR_012893 Daucus carota HOM05D005849 ORTHO05D004704 1.4e-11 74.3 184 37.0
ECA240G3450 Erigeron canadensis HOM05D005849 ORTHO05D004704 1.4e-11 74.3 127 42.5
Ah.01g002540 Amaranthus hybridus HOM05D005849 ORTHO05D004704 2.5e-11 73.6 239 32.6
VMungo0540G2501 Vigna mungo HOM05D005849 ORTHO05D004704 2.5e-11 73.6 99 44.4
arahy.Tifrunner.gnm1.ann1.S46AGL Arachis hypogaea HOM05D005849 ORTHO05D004704 5.5e-11 72.4 93 51.6
Phvul.007G121090 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 5.5e-11 72.4 239 33.5
Sabra16G0240400 Salix brachista HOM05D005849 ORTHO05D004704 7.2e-11 72.0 243 32.1
Manes.15G060700 Manihot esculenta HOM05D005849 ORTHO05D004704 2.1e-10 70.5 250 29.2
Gohir.A01G091100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 3.5e-10 69.7 237 32.5
Lj8P178T38 Lonicera japonica HOM05D005849 ORTHO05D004704 3.5e-10 69.7 108 48.1
Medtr3g082780 Medicago truncatula HOM05D005849 ORTHO05D004704 6.1e-10 68.9 88 47.7
CANSAT11G2057 Cannabis sativa HOM05D005849 ORTHO05D004704 1.0e-09 68.2 251 30.7
Lalb_Chr10g0107651 Lupinus albus HOM05D005849 ORTHO05D004704 1.8e-09 67.4 246 32.1
THA.LOC104808845 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 1.8e-09 67.4 96 45.8
Psat2g002880 Pisum sativum HOM05D005849 ORTHO05D004704 2.3e-09 67.0 124 41.9
Gohir.D01G076400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 3.0e-09 66.6 160 36.9
Lj6g0007370 Lotus japonicus HOM05D005849 ORTHO05D004704 3.0e-09 66.6 81 49.4
TPR.G11064 Trifolium pratense HOM05D005849 ORTHO05D004704 3.0e-09 66.6 88 50.0
QL08p004345 Quercus lobata HOM05D005849 ORTHO05D004704 5.1e-09 65.9 233 30.0
QL11p054311 Quercus lobata HOM05D005849 ORTHO05D004704 5.1e-09 65.9 233 30.0
arahy.Tifrunner.gnm1.ann1.8Y07GA Arachis hypogaea HOM05D005849 ORTHO05D004704 8.7e-09 65.1 93 49.5
ClCG02G009210 Citrullus lanatus HOM05D005849 ORTHO05D004704 8.7e-09 65.1 127 36.2
LjContig00081g0015024 Lotus japonicus HOM05D005849 ORTHO05D004704 8.7e-09 65.1 255 28.2
Nn1g04368 Nelumbo nucifera HOM05D005849 ORTHO05D004704 1.1e-08 64.7 129 34.9
Potri.001G367100 Populus trichocarpa HOM05D005849 ORTHO05D004704 1.5e-08 64.3 245 29.8
AT2G04480 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 1.9e-08 63.9 88 45.5
TPR.G35904 Trifolium pratense HOM05D005849 ORTHO05D004704 1.9e-08 63.9 238 32.4
AT5G35870 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 2.5e-08 63.5 88 44.3
Carub.0007s3167 Capsella rubella HOM05D009495 ORTHO05D004704 2.5e-08 63.5 88 43.2
Manes.03G140700 Manihot esculenta HOM05D005849 ORTHO05D004704 2.5e-08 63.5 246 27.2
Psat5g104280 Pisum sativum HOM05D005849 ORTHO05D004704 2.5e-08 63.5 246 30.1
Glyma.08G329000 Glycine max HOM05D005849 ORTHO05D004704 4.3e-08 62.8 79 46.8
Actinidia09789 Actinidia chinensis HOM05D005849 ORTHO05D004704 5.7e-08 62.4 100 40.0
Ca_06483_v3 Cicer arietinum L. HOM05D005849 ORTHO05D004704 5.7e-08 62.4 220 32.3
Gorai.002G099600 Gossypium raimondii HOM05D005849 ORTHO05D004704 5.7e-08 62.4 238 31.5
Manes.03G140566 Manihot esculenta HOM05D005849 ORTHO05D004704 5.7e-08 62.4 244 27.0
VMungo0540G1302 Vigna mungo HOM05D005849 ORTHO05D004704 5.7e-08 62.4 71 49.3
TWI38G0138 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 7.4e-08 62.0 251 26.3
AL7G44750 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 9.7e-08 61.6 88 43.2
Glyma.18G077800 Glycine max HOM05D014115 ORTHO05D004704 9.7e-08 61.6 81 46.9
Phvul.006G056700 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 9.7e-08 61.6 81 43.2
CARHR102390 Cardamine hirsuta HOM05D009495 ORTHO05D004704 1.6e-07 60.8 88 46.6
THA.LOC104815364 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 1.6e-07 60.8 94 44.7
Aa31sc203G20 Aethionema arabicum HOM05D009495 ORTHO05D004704 2.8e-07 60.1 88 42.0
AL3G42130 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 6.3e-07 58.9 88 44.3
BraA07t28463Z Brassica rapa HOM05D009495 ORTHO05D004704 1.1e-06 58.2 88 42.0
Haze_09816 Corylus avellana HOM05D005849 ORTHO05D004704 1.4e-06 57.8 130 37.7
Sp3g23270 Schrenkiella parvula HOM05D009495 ORTHO05D004704 1.4e-06 57.8 88 43.2
Os12g0498900 Oryza sativa ssp. japonica HOM05D005849 ORTHO05D004704 1.8e-06 57.4 178 30.9
arahy.Tifrunner.gnm1.ann1.UTL0P7 Arachis hypogaea HOM05D005849 ORTHO05D004704 3.1e-06 56.6 79 43.0
arahy.Tifrunner.gnm1.ann1.715EVP Arachis hypogaea HOM05D005849 ORTHO05D004704 4.1e-06 56.2 79 43.0
A07p06700 Brassica napus HOM05D009495 ORTHO05D004704 4.1e-06 56.2 88 43.2
BcaC06g35871 Brassica carinata HOM05D009495 ORTHO05D004704 5.3e-06 55.8 88 40.9
C07p10220 Brassica napus HOM05D009495 ORTHO05D004704 5.3e-06 55.8 88 40.9
BolC7t41473H Brassica oleracea HOM05D009495 ORTHO05D004704 5.3e-06 55.8 88 40.9
BcaB06g26787 Brassica carinata HOM05D009495 ORTHO05D004704 6.9e-06 55.5 86 40.7
BcaB02g08048 Brassica carinata HOM05D009495 ORTHO05D004704 9.0e-06 55.1 86 41.9


User provided reference genes

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